View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_high_12 (Length: 371)
Name: NF8319_high_12
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 146 - 332
Target Start/End: Original strand, 36547767 - 36547953
Alignment:
| Q |
146 |
tagtttaaaatccccgtataagtgagtgaaaagtacaagttagataataatccataatatccaactaagcgatagcaaaatgcacctcatttgcatccct |
245 |
Q |
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| T |
36547767 |
tagtttaaaatccccgtataagtgagtgaaaagtacaagttagataatcatccataatatccaactaagcgatagcaaaatgcacctcatttgcatccct |
36547866 |
T |
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| Q |
246 |
gtcatgactgcaacgcgatatgggcaggatgaaattttgttattgtgatgtttgtttttgtggtgggtgggttttgcatgtagtgac |
332 |
Q |
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| T |
36547867 |
gtcatgactgcaacgcgatatgggcagtatgaaattttgttattgtgatgtttgtttttgtggtgggtgggttttgcatgtagtgac |
36547953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 36547486 - 36547583
Alignment:
| Q |
10 |
tgatagcctatgtttagtgaaaagtaaaacattatctgtttcatgttatatagaaaatttaaaaattaatttcacagtgcacaaattttaaaggttta |
107 |
Q |
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| T |
36547486 |
tgatagcctatgtttagtgaaaagtaaaacattatctgtttcatgttatatagaaaattttaaaattaatttcacagtgcacaaattttaaaggttta |
36547583 |
T |
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