View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_high_19 (Length: 253)

Name: NF8319_high_19
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_high_19
NF8319_high_19
[»] chr5 (7 HSPs)
chr5 (14-253)||(1159135-1159374)
chr5 (14-157)||(10428779-10428922)
chr5 (14-175)||(27409815-27409976)
chr5 (14-157)||(18023244-18023387)
chr5 (14-157)||(19111590-19111733)
chr5 (36-157)||(29300058-29300179)
chr5 (14-157)||(31914497-31914640)
[»] chr1 (11 HSPs)
chr1 (14-253)||(21970692-21970930)
chr1 (18-253)||(12170771-12171006)
chr1 (14-160)||(6493771-6493917)
chr1 (14-157)||(43458543-43458680)
chr1 (39-155)||(9875089-9875206)
chr1 (14-131)||(42750452-42750569)
chr1 (14-113)||(23294835-23294934)
chr1 (24-86)||(7953293-7953355)
chr1 (14-112)||(14882440-14882537)
chr1 (14-157)||(28061945-28062089)
chr1 (45-154)||(10237861-10237970)
[»] chr6 (9 HSPs)
chr6 (14-253)||(14457529-14457768)
chr6 (30-157)||(20987287-20987414)
chr6 (14-160)||(20792840-20792986)
chr6 (25-110)||(8246740-8246826)
chr6 (15-157)||(17776918-17777060)
chr6 (30-113)||(10574425-10574508)
chr6 (14-82)||(24568828-24568896)
chr6 (40-97)||(11335368-11335425)
chr6 (14-91)||(15841852-15841929)
[»] chr3 (6 HSPs)
chr3 (14-175)||(28518690-28518851)
chr3 (18-157)||(42775370-42775509)
chr3 (14-113)||(20695978-20696077)
chr3 (15-112)||(28570088-28570185)
chr3 (14-61)||(49455082-49455129)
chr3 (24-106)||(42449543-42449625)
[»] chr8 (5 HSPs)
chr8 (14-157)||(13960479-13960622)
chr8 (14-160)||(4902124-4902270)
chr8 (14-95)||(29576633-29576714)
chr8 (115-164)||(44682801-44682850)
chr8 (14-160)||(17991932-17992078)
[»] chr4 (9 HSPs)
chr4 (14-157)||(26149641-26149786)
chr4 (14-160)||(43443045-43443191)
chr4 (14-157)||(46661551-46661694)
chr4 (14-157)||(46615606-46615749)
chr4 (14-91)||(29081379-29081456)
chr4 (42-175)||(50435109-50435242)
chr4 (14-160)||(22906287-22906433)
chr4 (14-160)||(22957955-22958101)
chr4 (14-94)||(13852689-13852769)
[»] chr7 (4 HSPs)
chr7 (14-113)||(44162927-44163026)
chr7 (14-91)||(41448443-41448520)
chr7 (102-164)||(6230502-6230564)
chr7 (24-136)||(12828838-12828950)
[»] chr2 (3 HSPs)
chr2 (14-157)||(40919467-40919610)
chr2 (14-157)||(44691384-44691526)
chr2 (14-91)||(33483520-33483598)
[»] scaffold0008 (1 HSPs)
scaffold0008 (14-94)||(57142-57222)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 1159135 - 1159374
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1159135 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaggagattaatattcaaagagggttgaaacaaggagatcct 1159234  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggtacacctcaatctctttcaaggtttcaaatttaaagagg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1159235 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggtacgcctcaatctctttcaaggtttcaaatttaaagagg 1159334  T
Q  214 atgggaaggtttattctcatctacaatatgccgatgatac 253  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1159335 atgggaaggtttattctcatctacaatatgtcgatgatac 1159374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 10428779 - 10428922
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| || || ||||| ||||||    
T  10428779 gatgaaggcgtgtgtttgtgggggaactatgtctattcttgtgaatgggagcccaacggaagaaattaatattcatacaggtttaaagcaaggtgatcct 10428878  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
    || |||||||| || ||||| ||||| || ||||| ||||||||    
T  10428879 ctagcaccttttctctttctcttggttgcagaaggttttagtgg 10428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 27409976 - 27409815
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||| | |||||||| |||||| || || || ||||| || |||||||| || |||||| || || | || |||||||||||||| |||    
T  27409976 gatgaaagcttgtgtctttgggggaaatatgtcaatactagttaatgggagcccaacggaggaaattaatgttaaacggggattgaaacaaggagaccct 27409877  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggt 175  Q
    |||||||||||| | |||||||| ||||| ||||||||| ||||||| ||| | ||||||||    
T  27409876 cttgcacctttcttgtttcttttagtggcggaaggctttggtggcttgatggcaaatgcggt 27409815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 18023387 - 18023244
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||||||||| | ||| || || |||||||||||||| ||||| ||||||||||| || ||| |||||||||| || || || ||| |||||||     
T  18023387 gatgaaggcttgtgtttttggtggtaggatgtctatccttgtaaatgggagtccaacggaggaaattgatattcaaaggggtttaaagcaatgagatcca 18023288  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | || ||||||||||| ||||| ||||| ||||| ||||||||    
T  18023287 ttagcccctttccttttccttttagtggcggaaggttttagtgg 18023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 19111733 - 19111590
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||| ||||| ||||| ||||||||||| || ||||| || |||||||| || || ||||||||||||||  | ||||||||||| ||     
T  19111733 gatgaatgcttgtgtttgtggtggaagcatgtctatcctagtaaatggtagcccaacggaggaaataaatattcaaagaggtcttaaacaaggagaccca 19111634  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | || || ||| | |||||||||||||||||||| ||||||||    
T  19111633 ttagctccattcttatttcttttggtggccgaaggttttagtgg 19111590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 29300058 - 29300179
Alignment:
Q  36 ggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttgcacctttcctttttcttt 135  Q
    |||||||| || || ||||| ||||| || ||||| || || || |||||| ||||||| || |||||||| ||||  ||||| |||||||||||| | |    
T  29300058 ggaagtatatcaatgcttgttaatgggagcccaacagaggaaatcaatattgaaagaggtttaaaacaaggggatctgcttgctcctttcctttttttgt 29300157  T
Q  136 tggtggccgaaggctttagtgg 157  Q
    ||||||||||||| ||||||||    
T  29300158 tggtggccgaaggttttagtgg 29300179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 31914497 - 31914640
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||||||||   | ||| || |||||||| || ||||| || |||||||| ||| ||||||||||||||||||| ||| | || ||||| |||| |    
T  31914497 gatgaaggcttgtacttttggaggtagtatgtccattcttgtcaacggaagtcctacgaaagagattaatattcaaagggggctaaagcaaggggatcgt 31914596  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
    ||  |||| ||  | || ||||||||||| || || ||||||||    
T  31914597 ctaacaccatttttgttccttttggtggctgaggggtttagtgg 31914640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 21970692 - 21970930
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||||||||||||||| || |||||||| ||||| || ||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||||    
T  21970692 gatgaaggcttgtgtgtgtggcgggagtatgtccatcctagtaaatggtagtccaacggaggaaatcaatatccaaagaggattgaaacaaggagatcct 21970791  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggtacacctcaatctctttcaaggtttcaaatttaaagagg 213  Q
    ||||||||||| ||||| || || ||||  ||||| |||||||| ||||||||||||||||| |  || ||| ||||||||||  ||||  |||||||||    
T  21970792 cttgcaccttt-cttttcctattagtggtggaaggttttagtggtttaatgtccaatgcggtgcgtcttaatttctttcaaggcgtcaagattaaagagg 21970890  T
Q  214 atgggaaggtttattctcatctacaatatgccgatgatac 253  Q
    | |||| ||| |||||||| || |||||||||||||||||    
T  21970891 aggggacggtctattctcaccttcaatatgccgatgatac 21970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 12170771 - 12171006
Alignment:
Q  18 aaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttg 117  Q
    ||||| ||||||||||| || |||||||| || ||||| || || || ||||| ||||| ||||||||||| |||||  | || |||||||||||| | |    
T  12170771 aaggcgtgtgtgtgtggagggagtatgtcgattcttgttaacgggagcccaacagaagaaattaatattcatagaggccttaagcaaggagatcctttag 12170870  T
Q  118 cacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggtacacctcaatctctttcaaggtttcaaatttaaagaggatgg 217  Q
    | || ||||| |||||||||||||| ||||| ||||| || ||||||   |||||  |   |   ||| | ||||||||||||||  | || || |||||    
T  12170871 ctccattcctctttcttttggtggcggaaggttttagcggtttaatgaggaatgctatctgcggtaatttttttcaaggtttcaagatgaaggaagatgg 12170970  T
Q  218 gaaggtttattctcatctacaatatgccgatgatac 253  Q
    |||||  || |||||||| |||||||||||||||||    
T  12170971 gaaggagtactctcatctccaatatgccgatgatac 12171006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 6493771 - 6493917
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||||||||| || ||||||||  | |||||||||||  | |||||||  |||||| ||||||| ||||| || |||||||| |||||     
T  6493771 gatgaaagcttgtgtgtgtggtggtagtatgtcggtacttgtgaatggttgcccaacggcggagattgatattcatagaggtttaaaacaaggggatccg 6493870  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
     | || |||||||| ||| | |||||||| ||||| |||||||||||    
T  6493871 ttagctcctttcctatttttgttggtggcggaaggttttagtggctt 6493917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 43458543 - 43458680
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||| ||||||||||| || ||||||||  | ||||||||||| | ||     ||||| ||| |||||||||||||||| |||||||| ||||||    
T  43458543 gatgaaggcatgtgtgtgtggtgggagtatgtcggttcttgtgaatggta-tc-----gaagaaattgatattcaaagagggttaaaacaaggggatcct 43458636  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | ||||||||||| ||| |||||||||| || || ||||||||    
T  43458637 ttggcacctttcctatttattttggtggcagagggttttagtgg 43458680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 9875206 - 9875089
Alignment:
Q  39 agtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaa-caaggagatcctcttgcacctttcctttttcttttg 137  Q
    |||||||| || ||||||||||||||||| ||  |||||||||| ||||||| ||| || ||| ||||| |||||| |  | | ||||||||| ||||||    
T  9875206 agtatgtcaattcttgtgaatggaagtcctacataagagattaacattcaaaaaggttttaaagcaaggggatcctttgtcgcatttccttttccttttg 9875107  T
Q  138 gtggccgaaggctttagt 155  Q
    |||||||||| |||||||    
T  9875106 gtggccgaagactttagt 9875089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 42750569 - 42750452
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| || |||||||||||||||   ||||| || ||||| |||||||  |||| ||| ||||| ||||||||||||||  | |||||||||||||||    
T  42750569 gatgaaagcgtgtgtgtgtgggggatccatgtcgatacttgttaatggaaccccaatggaggagataaatattcaaagaggccttaaacaaggagatcct 42750470  T
Q  114 cttgcacctttccttttt 131  Q
     | |||||||| ||||||    
T  42750469 ttagcaccttttcttttt 42750452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 23294934 - 23294835
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||| ||||||||| ||  || ||||||||||||||||| ||||| || | ||| ||||| || ||||||||||  || ||||||||||| ||||||    
T  23294934 gatgaagtcttgtgtgtttgaagggagtatgtctatccttgttaatgggagcctaacagaagaaatcaatattcaaaagggattgaaacaaggggatcct 23294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 7953293 - 7953355
Alignment:
Q  24 tgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatatt 86  Q
    ||||| ||||| || ||||||||||| ||||||||||||||||| ||||| || |||||||||    
T  7953293 tgtgtttgtggaggtagtatgtctattcttgtgaatggaagtcctacggaggaaattaatatt 7953355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 14882440 - 14882537
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcc 112  Q
    ||||||||||||||| ||| |||||||  ||| |||  |||| ||||| |||||| |||||| |||||| |||||||||||||  |||||||| |||||    
T  14882440 gatgaaggcttgtgtatgttggggaagcgtgtttattattgttaatggtagtccagcggaag-gattaacattcaaagagggtcaaaacaaggggatcc 14882537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 28062089 - 28061945
Alignment:
Q  14 gatgaaggctt-gtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcc 112  Q
    ||||||||||| |||||| |||||||| |||||| ||||| || |||||   ||| ||||| ||||||| | | ||||| || |||||||||||||||||    
T  28062089 gatgaaggctttgtgtgtttgggggaaatatgtcgatcctagttaatgggtctcccacggaggagattagtgtccaaaggggtttgaaacaaggagatcc 28061990  T
Q  113 tcttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
      | ||||||||  | |||||| | ||||| |||||  |||||||    
T  28061989 gttagcaccttttttgtttcttcttgtggcggaaggaattagtgg 28061945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10237861 - 10237970
Alignment:
Q  45 tctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttgcacctttcctttttcttttggtggccg 144  Q
    |||||||| || ||||| ||||||| ||| || |||||||||||||| ||| | || ||||| ||||| |||||||| ||  | || |||||||| || |    
T  10237861 tctatcctcgtcaatggtagtccaatggaggaaattaatattcaaagggggcttaagcaaggtgatccgcttgcaccatttttgttccttttggtagcgg 10237960  T
Q  145 aaggctttag 154  Q
    |||| |||||    
T  10237961 aaggttttag 10237970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 14457529 - 14457768
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||||||||||||||||||||||||||||||| || || |||||||| || | ||||||||| |||||| | ||||| || |||||||| ||| |     
T  14457529 gatgaaggcttgtgtgtgtgggggaagtatgtctattctcgttaatggaagccctaaggaagagataaatatttatagaggtttaaaacaaggtgattcc 14457628  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggtacacctcaatctctttcaaggtttcaaatttaaagagg 213  Q
    || |||||||| ||||| ||||||||||| || || |||||||| ||||||   |||||||| |   | ||| | ||| |||||||||   || | ||||    
T  14457629 ctagcaccttttcttttccttttggtggcggagggatttagtggtttaatgaggaatgcggtccggttgaatttgtttgaaggtttcatggtttaggagg 14457728  T
Q  214 atgggaaggtttattctcatctacaatatgccgatgatac 253  Q
    |||| ||||| ||||||||||| |||||||||||||||||    
T  14457729 atggtaaggtatattctcatcttcaatatgccgatgatac 14457768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 20987287 - 20987414
Alignment:
Q  30 tgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttgcacctttccttt 129  Q
    ||||| || |||||||| || |||||||||||  ||||||| ||||| ||| |||||||||||||||| |||||||| |||| | | |||||||||||||    
T  20987287 tgtggtgggagtatgtcgatacttgtgaatggttgtccaaccgaagaaattgatattcaaagagggttaaaacaaggggatcttttggcacctttccttt 20987386  T
Q  130 ttcttttggtggccgaaggctttagtgg 157  Q
    ||||||||||||| || || ||||||||    
T  20987387 ttcttttggtggcggagggttttagtgg 20987414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 20792840 - 20792986
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| || ||||| ||||| || |||||||| ||  | || ||||| |||||||||||||| ||||||||||||||||| || |||||||| |||||     
T  20792840 gatgaaagcgtgtgtatgtggtggtagtatgtccattttggttaatggtagtccaacggaagaaattaatattcaaagaggattaaaacaaggtgatccc 20792939  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
     | |||||||| || |||||||||||||| || || |||||||||||    
T  20792940 ttagcaccttttctctttcttttggtggcggagggttttagtggctt 20792986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 8246826 - 8246740
Alignment:
Q  25 gtgtgtgtg-ggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagat 110  Q
    ||||||||| ||||||||||||| |||||||  |||||||| |||||||| ||||||||||||||||||||  | ||||||||||||    
T  8246826 gtgtgtgtgtggggaagtatgtcgatccttgctaatggaagcccaacggaggagattaatattcaaagaggccttaaacaaggagat 8246740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 17776918 - 17777060
Alignment:
Q  15 atgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctc 114  Q
    |||||||| ||||||| | |||| ||||||||||||||||| ||||| || ||||| ||||| ||  ||||  |||| || || || |||||||||||      
T  17776918 atgaaggcgtgtgtgtttaggggtagtatgtctatccttgttaatggtagcccaaccgaagaaatagatatcaaaaggggtttaaagcaaggagatccat 17777017  T
Q  115 ttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
    | ||||| ||||||||||||||||| ||  |||| ||||||||    
T  17777018 tggcacccttcctttttcttttggtagcgaaaggttttagtgg 17777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 10574508 - 10574425
Alignment:
Q  30 tgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||| ||||||||||| || ||||| ||||||||||| || || ||||||| |||||| |||||  | |||||||||||||||    
T  10574508 tgtggtggaagtatgtcgattcttgttaatggaagtcctaccgaggagattagtattcatagaggccttaaacaaggagatcct 10574425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 24568828 - 24568896
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaa 82  Q
    |||||||| ||||||| |||| |||||||||| |||| | || ||||||||||||||||| || |||||    
T  24568828 gatgaaggtttgtgtgcgtggaggaagtatgtatatcatagttaatggaagtccaacggaggaaattaa 24568896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 11335425 - 11335368
Alignment:
Q  40 gtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggtt 97  Q
    ||||||| || ||||||||||| ||||| ||||||||| | ||||| |||||||||||    
T  11335425 gtatgtcgattcttgtgaatgggagtccgacggaagaggtcaatatccaaagagggtt 11335368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 15841852 - 15841929
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaag 91  Q
    ||||||||  ||||| | ||| || ||||| ||||| || |||||||| ||||||||||| ||||| |||||||||||    
T  15841852 gatgaagggatgtgtttttggtgggagtatatctattctagtgaatgggagtccaacggaggagatcaatattcaaag 15841929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 28518851 - 28518690
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||| ||||||||| ||||||||||||||| || ||||| |||||| |||||||  |||| |||||| ||||| | || ||||||||||| |||||     
T  28518851 gatgaagacttgtgtgtttgggggaagtatgtcgatgcttgtaaatggatgtccaaccaaagaaattaatgttcaacggggtttgaaacaaggtgatccg 28518752  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatgtccaatgcggt 175  Q
    ||||| |||||| | || ||| | ||||| ||||| ||||||||||| ||||| ||||||||    
T  28518751 cttgctcctttcttgttccttctagtggcagaaggttttagtggcttgatgtcgaatgcggt 28518690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 42775509 - 42775370
Alignment:
Q  18 aaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttg 117  Q
    ||||| ||||||||||||||||| ||||||||  | || |||||||||||||||||||| ||||||||||| ||||| |||||||| || || ||  | |    
T  42775509 aaggcgtgtgtgtgtgggggaaggatgtctattttggttaatggaagtccaacggaagaaattaatattcatagaggattgaaacagggcgaccccttag 42775410  T
Q  118 cacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
    ||||||| ||||| || |||||||  || |||||||||||    
T  42775409 caccttttcttttcctattggtggtggagggctttagtgg 42775370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 20695978 - 20696077
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||| ||||||||| ||| || ||||||||||| ||||| |||||||| |||||||| ||||||  ||||||||||||  | |||||||| ||||||    
T  20695978 gatgaagacttgtgtgtttggagggagtatgtctattcttgttaatggaagcccaacggaggagatttgtattcaaagaggccttaaacaaggtgatcct 20696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 28570088 - 28570185
Alignment:
Q  15 atgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcc 112  Q
    |||||||  |||||||| |||||||||||||| |||||||| ||||| || || ||  | |||||||||||| |||||||  | ||||||||||||||    
T  28570088 atgaaggtgtgtgtgtgggggggaagtatgtcgatccttgtcaatggtagccctacaaaggagattaatattaaaagaggccttaaacaaggagatcc 28570185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 49455082 - 49455129
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatgg 61  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||||    
T  49455082 gatgaaggcttatgtgtgtggaggaagtatgtctattcttgttaatgg 49455129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 42449625 - 42449543
Alignment:
Q  24 tgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaagg 106  Q
    ||||||||||| || |||||||| |   | || ||| |||||||||||||||||||||| || |||||||| ||||| |||||    
T  42449625 tgtgtgtgtggtggtagtatgtcgagtttggtaaattgaagtccaacggaagagattaacatacaaagaggattgaagcaagg 42449543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 13960622 - 13960479
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| ||| | |||||  | |||||||| ||||||    
T  13960622 gatgaaggcttgtgtgtgtggggggagcatgtcgattcttgtgaatggaagtcctacggaagaaattaacatttatagaggccttaaacaaggtgatcct 13960523  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | || || || || ||||||||||| || ||||| ||||||||    
T  13960522 ttagctccctttctctttcttttggttgctgaaggttttagtgg 13960479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 4902124 - 4902270
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||  |||||| |||||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||||  | || ||||| |||||     
T  4902124 gatgaagagttgtgtttgtggggggagtatgtctattcttgtcaatggtagcccgacggaagagattaatatccaaagaggtcttaagcaaggtgatccg 4902223  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
     | || |||||  | || |||||||| |||||||| ||| |||||||    
T  4902224 ttagctccttttttattccttttggtagccgaaggatttggtggctt 4902270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 29576714 - 29576633
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagaggg 95  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||   ||| || || ||||||||||||| ||||    
T  29576714 gatgaagggttgtgtgtttggggggagtatgtctatccttgtgaatggaagcttaacagaggaaattaatattcaaaaaggg 29576633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 44682801 - 44682850
Alignment:
Q  115 ttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatg 164  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  44682801 ttgcacctttcctatttcttttggtggcggaaggttttagtggcttaatg 44682850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 17992078 - 17991932
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||| | | | || |||||||| || ||||||||||| ||||||||||| ||||||   |||||  ||||  | |||||||| |||||     
T  17992078 gatgaaagcttgtgttttttgtgggagtatgtccattcttgtgaatggtagtccaacggaggagatttgcattcatcgaggccttaaacaaggggatccc 17991979  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
    ||||| |||||  | ||||| |||| ||| ||||| ||||| |||||    
T  17991978 cttgccccttttttgtttctcttggcggcggaaggatttagcggctt 17991932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 26149641 - 26149786
Alignment:
Q  14 gatgaaggcttgtgtgt-gtgggggaagtatgtctatccttgtgaatgga-agtccaacggaagagattaatattcaaagagggttgaaacaaggagatc 111  Q
    ||||||| ||||||||| |||| ||||||||||| || |||||||||||  |||||||||||||  || || |||||||||||  | |||||||| ||||    
T  26149641 gatgaagacttgtgtgttgtggtggaagtatgtcgattcttgtgaatggggagtccaacggaagcaatcaacattcaaagaggtcttaaacaaggtgatc 26149740  T
Q  112 ctcttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | | |||||||| || |||||||||||||| ||||| ||||||||    
T  26149741 atttagcaccttttctctttcttttggtggcggaaggttttagtgg 26149786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 43443191 - 43443045
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||||| ||| |||| |||||| ||| | || ||||| || |||||||| || |||||| || |||| || |||||||||||||| |||    
T  43443191 gatgaaagcttgtgtgtttggcggaaatatgtcaatcttagttaatgggagcccaacggaggaaattaatgttaaaaggggattgaaacaaggagaccct 43443092  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
    ||||||| |||| | |||||| | ||||| ||||| ||| |||||||    
T  43443091 cttgcacttttcttgtttcttctagtggcggaaggttttggtggctt 43443045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 46661551 - 46661694
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||||||||||||||| ||  ||||||  || ||||| || ||||| ||||||||||| || || ||||| |||||  | |||||||| | ||||    
T  46661551 gatgaaggcttgtgtgtgtggtggtggtatgttgattcttgtaaacggaagcccaacggaagaaatcaacattcatagaggtcttaaacaaggtggtcct 46661650  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | |  ||||||||||||||||| ||||| ||||| ||||||||    
T  46661651 ttagtgcctttcctttttcttttagtggcggaaggttttagtgg 46661694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 46615749 - 46615606
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||||||||||||||| ||  ||||||| || ||  | || ||||| ||||||||||| || || ||||| |||||  | |||||||| ||||||    
T  46615749 gatgaaggcttgtgtgtgtggtggtggtatgtcgattctcttaaacggaagcccaacggaagaaatcaacattcatagaggtcttaaacaaggtgatcct 46615650  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | |   |||||||||||||||| ||||| ||||| ||||||||    
T  46615649 ttagtgtctttcctttttcttttagtggcggaaggttttagtgg 46615606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 29081379 - 29081456
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaag 91  Q
    ||||||||  |||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |||||||||||| ||||    
T  29081379 gatgaaggggtgtgtgtgtggggggagtatgtcaattcttgttaatggtagtccgacggaggagattaatattaaaag 29081456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 50435109 - 50435242
Alignment:
Q  42 atgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttgcacctttcctttttcttttggtgg 141  Q
    |||||||| ||||| ||||| || ||||| || ||||||  | | ||||||||  | || ||||| ||||| |||||||||||  | || ||||||||||    
T  50435109 atgtctattcttgttaatgggagcccaaccgaggagatttgtgtccaaagaggcctaaagcaaggggatccgcttgcaccttttttgttccttttggtgg 50435208  T
Q  142 ccgaaggctttagtggcttaatgtccaatgcggt 175  Q
    ||||||| |||||||| || ||||| ||||||||    
T  50435209 ccgaaggttttagtggtttgatgtcaaatgcggt 50435242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 22906433 - 22906287
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||||| ||| |||| |||||| ||| | || || || || ||||| ||  | |||||| || |||| || ||||| |||||||| |||    
T  22906433 gatgaaagcttgtgtgtttggtggaaatatgtcaatcttagttaacgggagcccaacagagaaaattaatgttaaaaggggattgaatcaaggagaccct 22906334  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
    |||||||||||| | |||||| | ||||| ||||| ||| |||||||    
T  22906333 cttgcacctttcttgtttcttctagtggcggaaggttttggtggctt 22906287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 22958101 - 22957955
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| |||||||||| ||| |||| |||||| ||| | || || || || ||||| ||  | |||||| || |||| || ||||| |||||||| |||    
T  22958101 gatgaaagcttgtgtgtttggtggaaatatgtcaatcttagttaacgggagcccaacagagaaaattaatgttaaaaggggattgaatcaaggagaccct 22958002  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtggctt 160  Q
    |||||||||||| | |||||| | ||||| ||||| ||| |||||||    
T  22958001 cttgcacctttcttgtttcttctagtggcggaaggttttggtggctt 22957955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 13852689 - 13852769
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagg 94  Q
    ||||||||| ||||| | ||| || | ||||||||| || || ||||||||||| ||| | |||||||||||||| |||||    
T  13852689 gatgaaggcgtgtgtatttggtgggactatgtctattctagttaatggaagtccgacgaaggagattaatattcatagagg 13852769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 44162927 - 44163026
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||  | |||||||| ||||||    
T  44162927 gatgaaagcttgcgtgtgtggagggagtatgtctattcttgtgaatggaagtccaatggaggagattaatatccaaaggggccttaaacaaggggatcct 44163026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 41448443 - 41448520
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaag 91  Q
    ||||||| |||||||||||||||| |||||||| || ||||| |||||||| || ||||| || ||||||||||||||    
T  41448443 gatgaagacttgtgtgtgtggggggagtatgtccattcttgttaatggaagccctacggaggaaattaatattcaaag 41448520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 6230502 - 6230564
Alignment:
Q  102 caaggagatcctcttgcacctttcctttttcttttggtggccgaaggctttagtggcttaatg 164  Q
    |||||||||||| | || ||||| || |||||||||||||| |||||||||||||| ||||||    
T  6230502 caaggagatcctttggcgccttttctatttcttttggtggcggaaggctttagtggtttaatg 6230564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 12828950 - 12828838
Alignment:
Q  24 tgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcctcttgcacctt 123  Q
    ||||| |||| ||| |||||||| || ||||| |||||||  |||||| |||| ||||| ||||| |||||  | || |||||||||||  | || ||||    
T  12828950 tgtgtttgtgagggtagtatgtcgattcttgttaatggaatcccaacgaaagaaattaacattcatagaggcctcaagcaaggagatccattggcccctt 12828851  T
Q  124 tcctttttctttt 136  Q
    |||||||| ||||    
T  12828850 tcctttttttttt 12828838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 40919467 - 40919610
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    |||||||||||||||||||| |||||| ||||| |||||||| || || ||  | |||||| | ||  | |||||||||||| | |||||||| ||||||    
T  40919467 gatgaaggcttgtgtgtgtgcgggaagcatgtcgatccttgttaacggtagctcgacggaacaaatcgacattcaaagagggcttaaacaaggggatcct 40919566  T
Q  114 cttgcacctttcctttttcttttggtggccgaaggctttagtgg 157  Q
     | || || ||| | ||| | ||||||||||| |||||||||||    
T  40919567 ttggctccgttcttgtttttattggtggccgagggctttagtgg 40919610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 44691384 - 44691526
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagggttgaaacaaggagatcct 113  Q
    ||||||||| ||||||||||| || ||||||||  | ||||| ||||| ||||||||||| |||||  | ||||||||| |  | |||||||| ||||||    
T  44691384 gatgaaggcgtgtgtgtgtggagggagtatgtccgtgcttgtcaatggtagtccaacggaggagatacacattcaaagatgcctaaaacaaggtgatcct 44691483  T
Q  114 cttgcacctttcctttttctt-ttggtggccgaaggctttagtgg 157  Q
     | || |||||  || ||||| |||||||||||||| ||||||||    
T  44691484 ttagctccttt--ttattcttgttggtggccgaaggttttagtgg 44691526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 33483520 - 33483598
Alignment:
Q  14 gatgaaggcttgtgtgtgt-gggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaag 91  Q
    ||||||||||||||||||| ||||| |||||||| |||||| | ||||| ||||| | ||| || ||||||||||||||    
T  33483520 gatgaaggcttgtgtgtgtgggggggagtatgtcaatccttattaatgggagtcctatggaggaaattaatattcaaag 33483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 57142 - 57222
Alignment:
Q  14 gatgaaggcttgtgtgtgtgggggaagtatgtctatccttgtgaatggaagtccaacggaagagattaatattcaaagagg 94  Q
    ||||||| | |||| || ||| |||||||||||||| |||||||| ||||| ||||| || ||||||| ||| ||| ||||    
T  57142 gatgaagacgtgtgcgtttggtggaagtatgtctattcttgtgaacggaagcccaacagaggagattagtatccaacgagg 57222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University