View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_high_5 (Length: 480)
Name: NF8319_high_5
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 32530073 - 32530539
Alignment:
| Q |
1 |
agaatatcctatcataaatcatgtctaatgacaaactatttatatctaagaccttctaacagtttggcataaccc-acaatttggagttcattgacaatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32530073 |
agaatatcctatcataaatcatgtctaatgacaaactatttatatctaagaccttctaacagtttggcataaccccacaatttggagttcattgacaatt |
32530172 |
T |
|
| Q |
100 |
gacctttgtataatgaaactttacgcatgaaaatagtgattaagctaactgacgcaactaatataagcttaaatatatcaggaccaagacagattatgat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32530173 |
gacctttgtataatgaaactttacgcatgaaaatagtgattaagctaactgacgcaactaatataagcttagatatatcaggaccaagacagattatgat |
32530272 |
T |
|
| Q |
200 |
ctagtaattccagcccaggtatccattagccacataaaagcagcaaccataaggatcatgattatggatgtgtcattttgctctaccaatatggagtaat |
299 |
Q |
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| T |
32530273 |
ctagtaattccagcccaggtatccattagccacataaaagcagcaaccataaggatcatgattatggatgtgtcattttgctctaccaatatggagtaat |
32530372 |
T |
|
| Q |
300 |
gatgtataggaaaaagaactcaatgtcattcaagtaaccaaaaaggccaatcaccaaactatcatttatgaaatgtaaatagtccagtacgagtgaaatt |
399 |
Q |
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| T |
32530373 |
gatgtataggaacaagaactcaatgtcattcaagtaaccaaaaaggccaatcaccaaactatcatttatgaaatgtaaatagtccagtacgagtgaaatt |
32530472 |
T |
|
| Q |
400 |
tcagaagtaaatagatccaaggtccaataacataccaagatttgatcaggtttttgatgttgtattt |
466 |
Q |
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| T |
32530473 |
tcagaagtaaatagatccaaggtccaataacataccaagatttgatcaggtttttgatgttgtattt |
32530539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 465
Target Start/End: Original strand, 32519255 - 32519390
Alignment:
| Q |
330 |
caagtaaccaaaaaggccaatcaccaaactatcatttatgaaatgtaaatagtccagtacgagtgaaatttcagaagtaaatagatccaaggtccaataa |
429 |
Q |
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||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
32519255 |
caagttaccaaaaaggtcaatcaccaaacaatcatttatgagatgtaaatagtccaggacaagtgaaatttcagagttaaatagatccaaggtccaataa |
32519354 |
T |
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| Q |
430 |
cataccaagatttgatcaggtttttgatgttgtatt |
465 |
Q |
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| T |
32519355 |
cgtaccaagattttatcagggttttgatgttttatt |
32519390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 32544911 - 32545030
Alignment:
| Q |
267 |
atgtgtcattttgctctaccaatatggagtaatgatgtataggaaaaagaactcaatgtcattcaagtaaccaaaaaggccaatcaccaaactatcattt |
366 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||| |||| |||| ||| | || || |||||||||||||||||||||||||| ||||||| |
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| T |
32544911 |
atgtgtcactttgctctaccaatctggagcaatgatgtatgggaacaaga-ctcg--gctatacaggtaaccaaaaaggccaatcaccaaacaatcattt |
32545007 |
T |
|
| Q |
367 |
atgaaatgtaaatagtccagtac |
389 |
Q |
| |
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| || |||||||| ||||||||| |
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|
| T |
32545008 |
aagatatgtaaattgtccagtac |
32545030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32544572 - 32544620
Alignment:
| Q |
1 |
agaatatcctatcataaatcatgtctaatgacaaactatttatatctaa |
49 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32544572 |
agaatatcctatcataaatcatgtataatgacaaactatttaaatctaa |
32544620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 32544779 - 32544845
Alignment:
| Q |
138 |
attaagctaactgacgcaactaatataagcttaaatatatcaggaccaagacagattatgatctagt |
204 |
Q |
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|||||||||||| | ||| ||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
32544779 |
attaagctaactaatgcagctaatatctgcttaaatatatcacgaccaagacagcttatgatctagt |
32544845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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