View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_11 (Length: 392)
Name: NF8319_low_11
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 41075631 - 41075269
Alignment:
| Q |
18 |
gaaacacaggaatttgaggatttgggagaataggactgagtcatgtgcaattgtagtagacagagcacgtgttctgctagaagattggctttctgccaac |
117 |
Q |
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| T |
41075631 |
gaaacacgggaattttaggatttgggagaacaggactgagtcatgtgcaattttagtagacagagcacgtgttctgctagaagattggctttctgccaac |
41075532 |
T |
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| Q |
118 |
ataacaggaacgcaccagcaagctttttcctcatgatgaacagcccatgttgagtacagttcaacattcagctgctcatgctcatggtgcgcacacaact |
217 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
41075531 |
ataacaggaatgcaccagcaagctttttc-tcatgatgaacagcccatgttgagtataattcaacattcagctgctcatgctcatg-tgcgcacgcaact |
41075434 |
T |
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| Q |
218 |
gctcctgttccggtgaagtggcagcggccttctcgcggtcgactcaaatgtaatattgatgcaagtttttccatctcccaaaacagaactgtaatcggtt |
317 |
Q |
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|||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41075433 |
gctcctgttccgatgaagtggcagaggccttctcgtggctgactcaaatgtaatattgatgcaagtttttccatctcccaaaacagaactggaatcggtt |
41075334 |
T |
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| Q |
318 |
tctatattagagacgacgaaagaaatttcgtgctagctaataccatgaattttgcagctgttcat |
382 |
Q |
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||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41075333 |
tctgcattagagacgatgaaggaaatttcgtgctagctaaaaccatgaattttgcagctgttcat |
41075269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 382
Target Start/End: Complemental strand, 18985143 - 18984982
Alignment:
| Q |
221 |
cctgttccggtgaagtggcagcggccttctcgcggtcgactcaaatgtaatattgatgcaagtttttc-catctcccaaaacagaactgtaatcggtttc |
319 |
Q |
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| T |
18985143 |
cctgttccggtgaagtggcagtgtccctcttgcgggagactcaaatgcaatattgatgcaagtttctctcat-tccctaaacagaacaggaattggcatg |
18985045 |
T |
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| Q |
320 |
tatattagagacgacgaaagaaatttcgtgctagctaataccatgaattttgcagctgttcat |
382 |
Q |
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| | | |||||||| || ||| ||| ||||| || || |||||||||||||||||||||||| |
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| T |
18985044 |
tgtgtcagagacgaagagggaacttttgtgctcgccaaaaccatgaattttgcagctgttcat |
18984982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 2175457 - 2175345
Alignment:
| Q |
259 |
actcaaatgtaatattgatgcaagtttttccatctcccaaaacagaactgtaatcggtttctatattagagacgacgaaagaaatttcgtgctagctaat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||||| ||||||||||| |
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| T |
2175457 |
actcaaatgtaatattgatgcaagtttttccatctcccaaaacagaactggaattggtttgt---gtagagacggcgaaggaaattttgtgctagctaaa |
2175361 |
T |
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| Q |
359 |
accatgaattttgcag |
374 |
Q |
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| T |
2175360 |
accatgaattttgcag |
2175345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 2175665 - 2175474
Alignment:
| Q |
18 |
gaaacacaggaatttgaggatttgggagaataggactgagtcatgtgcaattgtagtagacagagcacgtgttctgct----agaagattggctttctgc |
113 |
Q |
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||||| |||||||||| |||||||||||| | || |||||||||||||| |||||||| ||||||||||| ||| | ||||||||||| || ||| |
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| T |
2175665 |
gaaacgcaggaatttgctgatttgggagaacaagaacgagtcatgtgcaatggtagtagatagagcacgtgtgctgttagaaagaagattggcattttgc |
2175566 |
T |
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| Q |
114 |
caacataacaggaacgcaccagcaagctttttcctcatgatgaacagcccatgttgagtacagttcaacattcagctgctcatgctcatggtg |
206 |
Q |
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| T |
2175565 |
caacataacaggtatgcagtagcaagcatttt-cacataatgaacagcccatgctgagaataattcaaccttcagatgatcatattcatggtg |
2175474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 2112438 - 2112366
Alignment:
| Q |
310 |
aatcggtttctatattagagacgacgaaagaaatttcgtgctagctaataccatgaattttgcagctgttcat |
382 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2112438 |
aatcggtttgtgtattagagacgacgaaggaaatttcgtgctagctaaaaccatgaattttgcagctgttcat |
2112366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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