View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_14 (Length: 362)
Name: NF8319_low_14
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 4253403 - 4253729
Alignment:
| Q |
16 |
agagaacaaaggaggagacttaggaacaaggttgagttcctttacttgaatattcaaggttggatgcttcattctactttttatcatctatgtttgaagc |
115 |
Q |
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| T |
4253403 |
agagaacaaaggaggagacttaggaacaaggttgagttcctttacttgaatattcaaggttggatgcttcattctactttttatcatctatgtttgaagc |
4253502 |
T |
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| Q |
116 |
tattttaccatgggtagataaatcttccctttgtgtcgagagtgggtgccgttagatttgattctaatgcaaatcattcatctggctagttatatataag |
215 |
Q |
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| T |
4253503 |
tattttaccatgggtagataaatcttccctttgtgtcgagagtgggtgccgttagatttgattctaatgcaaatcattcatctggctagttatatataag |
4253602 |
T |
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| Q |
216 |
ttttggttcacagtgtcgattactttattcatacacttaattctttttcggtcttaaagattaaaattgatcttttgatttacaaagaccatatataaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4253603 |
ttttggttcacagtgtcgattactttattcatacacttaattctttttcggtcttaaagattaaaattgatcttttgatttacaaagaccatatataaac |
4253702 |
T |
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| Q |
316 |
ttttacctaagggatatataataggtt |
342 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4253703 |
ttttacctaagggatatataataggtt |
4253729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 342
Target Start/End: Original strand, 4244597 - 4244798
Alignment:
| Q |
147 |
tgtgtcgagagtgggtgccgttagatttgattctaatgcaaatcattcatctggctagttatatataagttttggttcacagtgtcgattactttattca |
246 |
Q |
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| T |
4244597 |
tgtgttgagagtgggtgcagttagatttgattctagtgcaaatcatttacctggctagttatatataagttttgtttcactgtgtcgattactttattca |
4244696 |
T |
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| Q |
247 |
tac---acttaattctttttcggtctt-aaagattaaaattgatcttttgatttacaaa-gaccatatataaactttt-acctaagggatatataatagg |
340 |
Q |
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| T |
4244697 |
tacactacttaatcctttttcggtcttaaaacattaaaattgatcttttgatttacaaaggacaatatagaaacttttaacctaagggatatataatagg |
4244796 |
T |
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| Q |
341 |
tt |
342 |
Q |
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|| |
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| T |
4244797 |
tt |
4244798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 4244510 - 4244599
Alignment:
| Q |
19 |
gaacaaaggaggagacttaggaacaaggttgagttcctttacttgaatattcaaggttggatgcttcattctactttttatcatctatgt |
108 |
Q |
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||||||||| |||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
4244510 |
gaacaaagggggaggcttaagaacaagctggagttcctttacttgaatattcaaggttggatgcttcattctactctttctcatctatgt |
4244599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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