View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_15 (Length: 357)
Name: NF8319_low_15
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 7711440 - 7711767
Alignment:
| Q |
17 |
atgaaactctttattgtgcaatcaatgactgtatgtaatttgtatcgtaatatttaaacacaacttgcactcgttaatccaaagtattgcataatagaat |
116 |
Q |
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| T |
7711440 |
atgaaactctttattgtgcaatcaatgactataagtaatttgtatcgtaatatttaaacacaacttgcactcgttaatccaaagtattgcataatagaat |
7711539 |
T |
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| Q |
117 |
actacgacatccacttcattgtcagagatgtaggcacaattgatcgagttctatgatcacttgttcaattgttgtgttcttgcgcgtttatttatctgtt |
216 |
Q |
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| T |
7711540 |
actacaacatccacttcattgtcagagatgtaggcacaattgatcgagttctatgatcactcgttcaattgttgtgttcttgtgcgtttatttatctgtt |
7711639 |
T |
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| Q |
217 |
tactttatagccgattttagagtatgactgtcaaacttactctctctcaaactgttttcaggtatcattttctgtccagtaatatgtttaatcatgacaa |
316 |
Q |
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| T |
7711640 |
tattttatagccgattttagagtatgactgtcaaacttactctctctcaaactgttttcaggtatcattttctgtccagtaatatgtttaatcatgacaa |
7711739 |
T |
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| Q |
317 |
tcggaaactcagccatcatacttggtct |
344 |
Q |
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| T |
7711740 |
tcggaaactcagccatcatacttggtct |
7711767 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 22622603 - 22622561
Alignment:
| Q |
181 |
tcaattgttgtgttcttgcgcgtttatttatctgtttacttta |
223 |
Q |
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| T |
22622603 |
tcaattgttgtgtttttgtgcgtttatttatatgtttacttta |
22622561 |
T |
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