View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_16 (Length: 336)
Name: NF8319_low_16
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 100 - 319
Target Start/End: Complemental strand, 3401174 - 3400955
Alignment:
| Q |
100 |
tatttgattacttcaaatcacaagattaactgaaccctattcagcaagttattctacaagcaagttatattgaatcaaaagaacaataatttgtgttcca |
199 |
Q |
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| T |
3401174 |
tatttgattacttcaaatcacaagattaactgaaccctattcagccagttattctacaagcaagttatattgaatcaaaagaacaataatttgtgttcca |
3401075 |
T |
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| Q |
200 |
cttcacaccataagacagccacatcagtgtagatttacacgagataataactaaaacaacaatgagatgcataacatgaagttttgaacaaaaatattag |
299 |
Q |
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| T |
3401074 |
cttcacaccataagacagccacatcagcgtagatttacacgagataataactaaaacaacaatgagatgcataacatgaagttttgaacaaaaatattag |
3400975 |
T |
|
| Q |
300 |
cacccttcaggatttttcta |
319 |
Q |
| |
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||||||||||||||| |||| |
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| T |
3400974 |
cacccttcaggatttctcta |
3400955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3401317 - 3401175
Alignment:
| Q |
18 |
ttgttaacactttatgttgcaactctatcaactgaaatatcattaaactcaataagagtaaagtcaaatcagatttcttgtttatttgattacttcaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3401317 |
ttgttaacactttatgttgcaactctatcaactgaaatatcattaaacccaataagagtaaagtcaaatcagatttcttgtttatttgattacttcaaat |
3401218 |
T |
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| Q |
118 |
cacaagattaactgaaccctattcagcaagttattctacaagc |
160 |
Q |
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| T |
3401217 |
cacaagattaactgaaccctattcagacagttattctacaagc |
3401175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 20864638 - 20864492
Alignment:
| Q |
18 |
ttgttaacactttatgttgcaactctatc----aactgaaatatcattaaactcaataagagtaaagtcaaatcagatttcttgtttatttgattacttc |
113 |
Q |
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| T |
20864638 |
ttgttaacattttatgttgcaactctatctatcaactgaaatatcattaaacccaataagagtaaagtcaaatcatatttcttgtttatttgattacttc |
20864539 |
T |
|
| Q |
114 |
aaatcacaagattaactgaaccctattcagcaagttattctacaagc |
160 |
Q |
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| T |
20864538 |
aaatcacaagattaactgaaccctattcagccagttattttacaagc |
20864492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 107 - 301
Target Start/End: Original strand, 7131668 - 7131862
Alignment:
| Q |
107 |
ttacttcaaatcacaagattaactgaaccctattcagcaagttattctacaagcaagttatattgaatcaaaagaacaataatttgtgttccacttcaca |
206 |
Q |
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||||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
7131668 |
ttacttcaagtcacaagattaactgaaccctattcatccagttcttctacaagcaagttatatcaaatcaatagaacaataatttgtgttccacttcacc |
7131767 |
T |
|
| Q |
207 |
ccataagacagccacatcagtgtagatttacacgagataataactaaaacaacaatgagatgcataacatgaagttttgaacaaaaatattagca |
301 |
Q |
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| T |
7131768 |
ccataaaacagccacctcagcatagatttccatgagataataactaaaacaacaatgagatgcataacatgaagttttgaacaaaaatattagca |
7131862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 7131294 - 7131460
Alignment:
| Q |
18 |
ttgttaacactttat-gttgcaactctatcaactgaaatatcattaaactcaataagagtaaagtcaaatcagatttcttgtttatttgattacttcaaa |
116 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||| | ||| |||| ||||| ||| || |||||||||| |
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| T |
7131294 |
ttgtttacactttattgttgcaactctatcaactgaaagatcattaaacccaataaga--agagtaaaat-----ttcttatttcttatattacttcaag |
7131386 |
T |
|
| Q |
117 |
tcacaagattaactgaaccctattcagcaagttattctacaagcaagttatattgaatcaaaagaacaataatt |
190 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7131387 |
tcacaagattaactgaaccctattcatccagttcttctacaagcaagttatattgaatcaatagaacaataatt |
7131460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 7131591 - 7131647
Alignment:
| Q |
19 |
tgttaacactttat-gttgcaactctatcaactgaaatatcattaaactcaataaga |
74 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7131591 |
tgtttacactttattgttgcaactctatcaactgaaagatcattaaacccaataaga |
7131647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 314
Target Start/End: Original strand, 53044216 - 53044424
Alignment:
| Q |
112 |
tcaaatcacaagattaactgaaccctattcagcaagttattctacaagcaagttatattgaatcaaaagaac-aataatttgtgttccacttcacaccat |
210 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| | |||| || |||||||||||||||||||||||| |||| |||| | | ||||| |||||||||||| |
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| T |
53044216 |
tcaaatcaaaagaataactaaaccctattcaaccagttcttttacaagcaagttatattgaatcaatagaattaatattctctgttctacttcacaccat |
53044315 |
T |
|
| Q |
211 |
aagacagccacatcagtgtagatttacacgagataataactaaaacaacaatgagatg-----cataacatgaagttttgaacaaaaatattagcaccct |
305 |
Q |
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|| |||||| ||| |||| |||||||||||| ||||||||||| |||||||||||| |||||| ||||||||| |||| ||||||||||||||| |
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| T |
53044316 |
aaaacagccgtctcattgtaaatttacacgagagaataactaaaaaaacaatgagatgtataacataacttgaagttttaaacataaatattagcaccct |
53044415 |
T |
|
| Q |
306 |
tcaggattt |
314 |
Q |
| |
|
||||||||| |
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|
| T |
53044416 |
tcaggattt |
53044424 |
T |
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