View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_20 (Length: 283)
Name: NF8319_low_20
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 30892987 - 30892720
Alignment:
| Q |
1 |
gaaacataaatgtatattgtcaattatacgttcttctctcaagnnnnnnn-tattatacgtttacgatgaaaatatccaaacgtaaaacatttgtaaaaa |
99 |
Q |
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| T |
30892987 |
gaaacataaatgtatattgtcaattatacattcttccctcaaggaaaaaaatattatacgtttacaatgaaagtatccaaacataaaacacttgtaaaaa |
30892888 |
T |
|
| Q |
100 |
atgtatatttacaattgaaaaataac-tttgattaaaaagcacatttacaatttttaatccaaacatacattaagtgtgggtaaaattcatctccaagga |
198 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30892887 |
atgtatatttacaattgaaaaataacatttaattaaaaagcacatttacaatttttaatccaaacatacattaagtgtgggaaaaattcatctccaagga |
30892788 |
T |
|
| Q |
199 |
acgaatagccttaaagtgtgtataattacatattgtccaactacattttatatcacacttcttttttc |
266 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30892787 |
acgaatagccttaaagtgtgtctaattacattgtgtccaactacattttatatcacacttcttttttc |
30892720 |
T |
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