View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_23 (Length: 240)

Name: NF8319_low_23
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_23
NF8319_low_23
[»] chr5 (3 HSPs)
chr5 (1-223)||(1159361-1159583)
chr5 (1-180)||(10429005-10429184)
chr5 (43-176)||(18305603-18305736)
[»] chr1 (4 HSPs)
chr1 (1-189)||(21970917-21971105)
chr1 (1-122)||(8719443-8719560)
chr1 (61-129)||(10238116-10238184)
chr1 (1-69)||(23294640-23294708)
[»] chr6 (3 HSPs)
chr6 (1-180)||(14457755-14457934)
chr6 (1-221)||(20793046-20793267)
chr6 (1-180)||(15842078-15842257)
[»] chr3 (4 HSPs)
chr3 (1-180)||(42775108-42775287)
chr3 (7-180)||(43075136-43075309)
chr3 (56-107)||(20696259-20696310)
chr3 (147-221)||(47475177-47475251)
[»] chr7 (1 HSPs)
chr7 (8-154)||(13767703-13767849)
[»] chr2 (2 HSPs)
chr2 (1-180)||(44691609-44691788)
chr2 (32-113)||(18145753-18145834)
[»] chr4 (2 HSPs)
chr4 (55-139)||(29081660-29081744)
chr4 (1-116)||(8505822-8505937)
[»] chr8 (2 HSPs)
chr8 (91-180)||(4902440-4902529)
chr8 (49-201)||(13960197-13960348)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1159361 - 1159583
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159361 tatgtcgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 1159460  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgtgcgcaaggtagtttgccgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159461 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgtgcgcaaggtagtttgccgtt 1159560  T
Q  201 catgtatttgggcttaccggtgg 223  Q
    |||||||||||||||||||||||    
T  1159561 catgtatttgggcttaccggtgg 1159583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 10429005 - 10429184
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    ||||||||||||||||||||| ||||||||||||||||  | ||| | ||||| |||||||| ||  | || || ||||| ||||| || ||||| |||     
T  10429005 tatgccgatgatactatttgtatggggaaagcaacggtgaacaatctttggactttgaaggcgttacttagaggctttgagttggcttctgggttaaagg 10429104  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    | | ||| | ||| ||| | |||||||| || |||||    ||||  |||||| |||||||||| |||||||||||||||    
T  10429105 tgagtttttataagagttgcttgatgggaataaatgtcaatccggattttatgaatatggcgtgcaattttttgaattgt 10429184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 18305736 - 18305603
Alignment:
Q  43 aatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaagattaatttctttaaaagtagtttgatggggattaatgtggcgc 142  Q
    ||||||||||| |||||||| ||  | || ||||||||  |||| ||||| |||||  | |||||||  |||||| | |||||||  || |||||||||     
T  18305736 aatttgtggactttgaaggcctttcttagaggttttgagatggcttccggattgaaagtcaatttctacaaaagttgcttgatggaaataaatgtggcgg 18305637  T
Q  143 cggtgtttatggatatggcgtgtaattttttgaa 176  Q
     ||  |||||||||||||||||||||||||||||    
T  18305636 aggaatttatggatatggcgtgtaattttttgaa 18305603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 21970917 - 21971105
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    ||||||||||||||||| ||| ||||||||||||| ||| | ||||||||||| ||||||| |||| | |||||||||||| |||| |||| |||||||     
T  21970917 tatgccgatgatactatatgtctggggaaagcaacagtatagaatttgtggactttgaaggttttgcttaggggttttgaaatggcttccgagttgaagg 21971016  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgtgcgcaaggt 189  Q
    ||||||| || |||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  21971017 ttaattttttcaaaagttgtttgatggggattaatgtggcaccggagtttatggatatggcttgtaattttttgaattgtgctcaaggt 21971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8719443 - 8719560
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    ||||| ||||||||| | ||||||||||| |||    | || ||||||||||| ||||||||  | |||||||| |||||| |||| ||||| ||||||     
T  8719443 tatgcggatgatactttgtgtgtggggaaggca----tggagaatttgtggactttgaaggcgattttgagggggtttgaaatggcgtccggtttgaagg 8719538  T
Q  101 ttaatttctttaaaagtagttt 122  Q
    | |||||||  |||||||||||    
T  8719539 taaatttctccaaaagtagttt 8719560  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 10238116 - 10238184
Alignment:
Q  61 gctttgttgaggggttttgaattggcctccgggttgaagattaatttctttaaaagtagtttgatgggg 129  Q
    ||||||||||| ||||||||  |||| ||||| |||||| |||||||   ||||||| |||||||||||    
T  10238116 gctttgttgagaggttttgagatggcatccggattgaaggttaattttcataaaagttgtttgatgggg 10238184  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23294708 - 23294640
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttg 69  Q
    ||||||||||||||| ||||  | ||  | |||||||| |||||||| ||||| |||||||||||||||    
T  23294708 tatgccgatgatactctttgcataggtgaggcaacggttgataatttatggactttgaaggctttgttg 23294640  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 14457755 - 14457934
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    |||||||||||||||||||| ||||||||||  | ||| || ||||||||||| ||||| |||||| | || || |||||  |||| ||||| ||||||     
T  14457755 tatgccgatgatactatttgcgtggggaaagtcatggtggagaatttgtggactttgaaagctttgctaagaggctttgagatggcatccggattgaagg 14457854  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    ||||||| | ||| ||| |||||||||| |||||||||||| |||  ||||||||||||||||| || ||||||||||||    
T  14457855 ttaatttttataagagttgtttgatgggaattaatgtggcgacggaatttatggatatggcgtgaaactttttgaattgt 14457934  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20793046 - 20793267
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttg-aag 99  Q
    ||||||||||||||||||||||||||  ||  |||||| || ||||||||||| |||||||||||| | ||||| |||||  |||| ||||||||| |||    
T  20793046 tatgccgatgatactatttgtgtgggacaaataacggtggagaatttgtggaccttgaaggctttgcttaggggctttgagatggcttccgggttgaaag 20793145  T
Q  100 attaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgtgcgcaaggtagtttgccgt 199  Q
     ||||||| | ||| ||| |||||| ||  |||||||||| |||||  |||||||| |||||||| ||||| |||||||||   ||||||   || ||||    
T  20793146 tttaatttttataagagttgtttgaaggatattaatgtggagccgggctttatggaaatggcgtgcaatttcttgaattgtagtcaaggtttctttccgt 20793245  T
Q  200 tcatgtatttgggcttaccggt 221  Q
    ||| ||||||||| ||||||||    
T  20793246 tcaagtatttggggttaccggt 20793267  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 15842078 - 15842257
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    |||||||| |||||| ||||| | || || ||  |||| || ||||||||||| ||||| |||||||||||||| |||||  |||| ||||| ||||||     
T  15842078 tatgccgacgatactctttgtattggaaaggcgtcggtggagaatttgtggactttgaaagctttgttgagggggtttgagatggcatccggattgaagg 15842177  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    |||||||  | |||||| | ||||| ||| | ||||| |||  || ||||||||| ||||| ||| ||||| ||||||||    
T  15842178 ttaattttctaaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttgtgattttctgaattgt 15842257  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 42775287 - 42775108
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||| | || ||||||||  |||| ||||| || || |    
T  42775287 tatgccgatgatactatttgtgtggggaaagcaacggtggaaaatttgtggactttgaaagcgttgcttagaggttttgagatggcttccggtttaaaaa 42775188  T
Q  101 ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    |||||||   ||| ||| | |||||||| ||||||||||  ||||  |||||||| |||||| |||| || |||||||||    
T  42775187 ttaattttcataagagttgcttgatgggtattaatgtggatccggcatttatggagatggcgagtaacttcttgaattgt 42775108  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 43075309 - 43075136
Alignment:
Q  7 gatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaagattaatt 106  Q
    ||||||||||||||| |||||||||||||| | || ||| | ||||| |||||||||||| | || || |||||  |||| |||||||| ||| | ||||    
T  43075309 gatgatactatttgtatggggaaagcaacgatggaaaatctttggactttgaaggctttgcttagaggctttgagatggcttccgggttaaaggtgaatt 43075210  T
Q  107 tctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    | | ||| ||| |||||||||| || |||||    ||||  |||||| |||||||||| ||||| |||||||||    
T  43075209 tttataagagttgtttgatgggaatcaatgtcaacccggattttatgaatatggcgtgcaatttcttgaattgt 43075136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20696259 - 20696310
Alignment:
Q  56 tgaaggctttgttgaggggttttgaattggcctccgggttgaagattaattt 107  Q
    |||||||| | ||||| ||||||||| |||| ||||||||||||||||||||    
T  20696259 tgaaggctcttttgagaggttttgaaatggcttccgggttgaagattaattt 20696310  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 47475177 - 47475251
Alignment:
Q  147 gtttatggatatggcgtgtaattttttgaattgtgcgcaaggtagtttgccgttcatgtatttgggcttaccggt 221  Q
    ||||||||||||||| |||| |||||||||||||   ||||| ||| | ||||| | ||||||||| ||||||||    
T  47475177 gtttatggatatggcttgtacttttttgaattgtagtcaagggagtctcccgtttaagtatttggggttaccggt 47475251  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13767849 - 13767703
Alignment:
Q  8 atgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaagattaattt 107  Q
    |||||||| |||||||||||||| |||| || || ||||||||||| ||||| |||||| | |||||||||||  || | |||||||||||  | |||||    
T  13767849 atgatactctttgtgtggggaaaacaacagtggagaatttgtggactttgaaagctttgcttaggggttttgagatgacatccgggttgaaagtcaattt 13767750  T
Q  108 ctttaaaagtagtttgatggggattaatgtggcgccggtgtttatgg 154  Q
     || || ||| |||||||||| |||||||| | |||||  |||||||    
T  13767749 tttcaagagttgtttgatgggtattaatgttgagccggaatttatgg 13767703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 44691609 - 44691788
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    ||||| |||||||| |||||| |||||||||| ||||| || ||||| |||   ||||| ||| | || |||||||||||  |||  ||||| || ||||    
T  44691609 tatgcggatgatacgatttgtatggggaaagctacggtggaaaatttatgggtgttgaaagctctcttaaggggttttgagatggtgtccggttt-aaga 44691707  T
Q  101 -ttaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
     ||||||||||||||||| ||||||||||| | ||||| |    || |||||||| |||||||||||| ||||||||||||    
T  44691708 gttaatttctttaaaagttgtttgatggggttgaatgttgaaagggagtttatggttatggcgtgtaactttttgaattgt 44691788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 18145753 - 18145834
Alignment:
Q  32 caacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaagattaatttctttaa 113  Q
    |||||||  ||||||||||||| ||||||||  ||| ||| ||||||||| |||  |||||||||||  |||||||||||||    
T  18145753 caacggtgaataatttgtggactttgaaggcggtgtcgagaggttttgaaatggtgtccgggttgaaagttaatttctttaa 18145834  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 29081660 - 29081744
Alignment:
Q  55 ttgaaggctttgttgaggggttttgaattggcctccgggttgaagattaatttctttaaaagtagtttgatggggattaatgtgg 139  Q
    ||||| ||||||||||||||||||||| |||| || || |||||| | |||||| |||| ||| | ||||||||||| |||||||    
T  29081660 ttgaaagctttgttgaggggttttgaaatggcgtctggattgaaggtgaatttccttaagagttgcttgatggggataaatgtgg 29081744  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8505937 - 8505822
Alignment:
Q  1 tatgccgatgatactatttgtgtggggaaagcaacggtagataatttgtggacattgaaggctttgttgaggggttttgaattggcctccgggttgaaga 100  Q
    ||||||||||||||  ||||| | |||||||| ||||| || ||| | | |||| |||||||  | ||||| ||||||||  |||| ||||| |||||||    
T  8505937 tatgccgatgataccctttgtatagggaaagctacggttgagaatcttttgacaatgaaggcgcttttgagaggttttgagatggcatccggcttgaaga 8505838  T
Q  101 ttaatttctttaaaag 116  Q
    ||||||||| ||||||    
T  8505837 ttaatttctctaaaag 8505822  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 4902440 - 4902529
Alignment:
Q  91 gggttgaagattaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatggcgtgtaattttttgaattgt 180  Q
    ||||||||  ||||||| || |||||| ||||| |||| ||||||||  || | | ||||||| ||||||||||| ||||| ||||||||    
T  4902440 gggttgaaagttaattttttcaaaagttgtttggtgggtattaatgtcacggccgagtttatgaatatggcgtgtgattttctgaattgt 4902529  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 13960348 - 13960197
Alignment:
Q  49 tggacattgaaggctttgttgaggggttttgaattggcctccgggttgaagattaatttctttaaaagtagtttgatggggattaatgtggcgccggtgt 148  Q
    ||||| || |||||||||||||| ||||| ||| |||| || || |||||| |||||||   ||||||| | ||| |||| ||||||||||  |||   |    
T  13960348 tggaccttaaaggctttgttgagaggtttcgaaatggcttcgggtttgaaggttaattttcataaaagttgcttggtgggtattaatgtggatccgacat 13960249  T
Q  149 ttatggatatggcgtgtaattttttgaattgtgcgcaaggtagtttgccgttc 201  Q
    |||| || |||||||| || ||||||||||||   ||||||||| | ||||||    
T  13960248 ttat-gagatggcgtgcaactttttgaattgtagtcaaggtagtcttccgttc 13960197  T

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