View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319_low_24 (Length: 239)
Name: NF8319_low_24
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13839239 - 13839021
Alignment:
| Q |
1 |
cacatgtgattacatatatttgaagtgatagctcagtggtagctggtaagaacttagtgttgtaaacctcaaggtacagagttcaaatctcatcggggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13839239 |
cacatgtgattacatatatttgaagtgatagctcagtggtagctggtaagagcttagtgttgtaaacctcaaggtacagagttcaaatctcatcggggat |
13839140 |
T |
|
| Q |
101 |
ggttgtataatggtactgatgtcactttaattaatgaaaatttcctcctttccccaattttnnnnnnnnnntaaataatcagttctattttttcaaatta |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13839139 |
ggttgtataatggtattgatgtcactttaattaatgaaaatttcctccttcccccaattt----aaaaaaaaaaataatcagttctattttttcaaatta |
13839044 |
T |
|
| Q |
201 |
ttattgatgcctatgggtatgtt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13839043 |
ttattgatgcctatgggtatgtt |
13839021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 36198966 - 36198899
Alignment:
| Q |
44 |
tggtaagaacttagtgttgtaaacctcaaggtacagagttcaaatctcatcggggatggttgtataatg |
112 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||| ||||||||||| | ||||||||||||||| |||| |
|
|
| T |
36198966 |
tggtaagagcttagccttgtaa-cctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg |
36198899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 21065937 - 21065900
Alignment:
| Q |
123 |
cactttaattaatgaaaatttcctcctttccccaatttt |
161 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21065937 |
cactttaattaatgaaaatttcctcc-ttccccaatttt |
21065900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 6399172 - 6399120
Alignment:
| Q |
46 |
gtaagaacttagtgttgtaaacctcaaggtacagagttcaaatctcatcgggga |
99 |
Q |
| |
|
|||||| |||||| |||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
6399172 |
gtaagagcttagtcttgtaa-cctcaatgtacagagttcaaatcttatcgggga |
6399120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 49443632 - 49443583
Alignment:
| Q |
65 |
aacctcaaggtacagagttcaaatctcatcggggatggttgtataatggt |
114 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||| ||||||| |||||| |
|
|
| T |
49443632 |
aacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggt |
49443583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University