View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319_low_26 (Length: 236)
Name: NF8319_low_26
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_26 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4784131 - 4783912
Alignment:
| Q |
16 |
ataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatcaaagtttgattaaaaccaactgatttgtagtagnnnnnnnn |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4784131 |
ataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatcaaagtttgattaaaaccaactgatttggagtagtttttttt |
4784032 |
T |
|
| Q |
116 |
nnngtaaaagatttggagtggttaacaaaacgtagtatagaaaa-tgtgttttcctggtattaccatgtatttatagtgaatgaattggcaaaacaattg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4784031 |
t--gtaaaagatttggagtggttaacaaaacgtagtatagaaaaatgtgttttcctggtattaccatgtatttatagtgaatgaattggcaaaacaattg |
4783934 |
T |
|
| Q |
215 |
gtggtcaaattcaataataatc |
236 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
4783933 |
gtggtcaaatttaataataatc |
4783912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University