View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_28 (Length: 230)

Name: NF8319_low_28
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_28
NF8319_low_28
[»] chr3 (19 HSPs)
chr3 (1-182)||(27661239-27661420)
chr3 (17-117)||(26537591-26537690)
chr3 (1-117)||(27662377-27662492)
chr3 (1-103)||(1677172-1677273)
chr3 (3-108)||(3149448-3149554)
chr3 (19-126)||(27329021-27329127)
chr3 (29-117)||(3149811-3149900)
chr3 (41-100)||(3026678-3026737)
chr3 (41-100)||(39871942-39872001)
chr3 (18-111)||(39870636-39870728)
chr3 (18-102)||(13645043-13645126)
chr3 (17-103)||(13645262-13645349)
chr3 (17-68)||(26538746-26538797)
chr3 (18-89)||(27361399-27361469)
chr3 (27-98)||(34594455-34594525)
chr3 (18-100)||(25529691-25529773)
chr3 (18-95)||(32615395-32615472)
chr3 (61-109)||(20340166-20340214)
chr3 (198-230)||(27661192-27661224)
[»] chr7 (10 HSPs)
chr7 (1-114)||(19639737-19639848)
chr7 (1-111)||(38758083-38758193)
chr7 (17-107)||(5974339-5974428)
chr7 (1-111)||(38756847-38756959)
chr7 (17-103)||(5975439-5975524)
chr7 (19-102)||(30045978-30046061)
chr7 (18-100)||(37556305-37556387)
chr7 (18-97)||(41592978-41593056)
chr7 (76-110)||(19638722-19638756)
chr7 (1-59)||(20207936-20207993)
[»] chr8 (4 HSPs)
chr8 (1-162)||(44690181-44690340)
chr8 (1-103)||(7274420-7274521)
chr8 (29-126)||(27411005-27411101)
chr8 (18-105)||(37964403-37964488)
[»] chr2 (7 HSPs)
chr2 (1-178)||(31559295-31559471)
chr2 (1-117)||(44904709-44904829)
chr2 (18-111)||(28167107-28167202)
chr2 (1-102)||(28165852-28165955)
chr2 (18-94)||(44905952-44906028)
chr2 (4-74)||(30547807-30547876)
chr2 (1-98)||(5696138-5696234)
[»] chr1 (10 HSPs)
chr1 (1-149)||(9419558-9419705)
chr1 (4-111)||(13223100-13223207)
chr1 (1-117)||(13229034-13229152)
chr1 (18-127)||(27524465-27524573)
chr1 (18-127)||(28253388-28253497)
chr1 (18-114)||(12097714-12097809)
chr1 (1-117)||(40767802-40767920)
chr1 (18-104)||(37401220-37401306)
chr1 (18-100)||(32849702-32849784)
chr1 (18-100)||(11429430-11429512)
[»] chr4 (5 HSPs)
chr4 (1-111)||(11148533-11148642)
chr4 (1-117)||(34538307-34538425)
chr4 (1-111)||(34539564-34539674)
chr4 (1-103)||(20946050-20946151)
chr4 (17-98)||(2671736-2671816)
[»] chr5 (2 HSPs)
chr5 (1-111)||(33489666-33489775)
chr5 (112-162)||(28592239-28592289)
[»] chr6 (2 HSPs)
chr6 (14-117)||(1134325-1134426)
chr6 (18-97)||(28050114-28050193)
[»] scaffold0517 (1 HSPs)
scaffold0517 (18-104)||(6770-6856)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 27661420 - 27661239
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27661420 aaggtggaaattttgagttttaaatttcaaaattttatgattacatttctttaatttcacccctatgtaaatatgtgttatttgttttagtccctctact 27661321  T
Q  101 aacaccagttgtcatctgtcaggccatataagcgtgtttttccatctcatcaattgtcacgtttgcgttcgttagccaacaa 182  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  27661320 aacaccagttgtcatctctcatgccacataagcgtgtttttccatctcatcaattgtcacgtctgcgttcgttagtcaacaa 27661239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 26537690 - 26537591
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatc 116  Q
    ||||||||||  ||||||| |||||||||||| |||||||||| || ||| |||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  26537690 gttttaaattgtaaaatttgatgattacgttt-tttaatttcatccttatttaaatatgtgtttttgattttagtccctctactaacaccaattgtcatc 26537592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 27662377 - 27662492
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    ||||||||||||  |  |||||||||||||||||| || |||| |||| |||||||||  || | |||||||||| |||||| |||||||||||||||||    
T  27662377 aaggtggaaataaaggattttaaatttcaaaatttgataattatgtttttttaatttcgtcc-tctgtaaatatgcgtttttagttttagtccctctact 27662475  T
Q  101 aacaccagttgtcatct 117  Q
    || |||| ||| |||||    
T  27662476 aagaccaattgccatct 27662492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1677273 - 1677172
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| |  |||||||| |||||| ||| |||||||||||| |||| ||||  |||||||||||| || |||||| ||||||||||||||| |    
T  1677273 aaggtggaaataatatgttttaaaattcaaattttgatgattacgttt-tttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaat 1677175  T
Q  101 aac 103  Q
    |||    
T  1677174 aac 1677172  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 3149554 - 3149448
Alignment:
Q  3 ggtggaaatactgagttttaaatttcaaaattttatgattacgtttcttt-aatttcacccctatgtaaatatgtgttttttgttttagtccctctacta 101  Q
    |||||||| | ||| ||||||||| |||||||| ||||||| |||| ||| ||||||  ||||||||||| ||| || ||| ||||||||||||||||||    
T  3149554 ggtggaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctctacta 3149455  T
Q  102 acaccag 108  Q
    | |||||    
T  3149454 agaccag 3149448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 27329127 - 27329021
Alignment:
Q  19 tttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatctg 118  Q
    |||||| |||||||||| ||| ||| |||| |||||||||| |||||||||||| ||||||||| |||||||||| | || |||||| | || ||||||     
T  27329127 tttaaaattcaaaatttgatgtttaggttt-tttaatttcatccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctc 27329029  T
Q  119 tcaggcca 126  Q
    ||| ||||    
T  27329028 tcatgcca 27329021  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 3149811 - 3149900
Alignment:
Q  29 aaaattttatgattacgtttctttaatttcac-ccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatct 117  Q
    ||||||| |||||||||||| ||||||||||  ||||||||||| ||| |||||| ||||| |||||||||| || | ||| ||||||||    
T  3149811 aaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgtttttgtccctctaccaagagcagctgtcatct 3149900  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 3026678 - 3026737
Alignment:
Q  41 ttacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||| ||||||| || ||||||||||| || ||||||| |||||||||||||||||    
T  3026678 ttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 3026737  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 39871942 - 39872001
Alignment:
Q  41 ttacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||| ||||||| || ||||||||||| || ||||||| |||||||||||||||||    
T  39871942 ttacgtttttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 39872001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 39870728 - 39870636
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttg 111  Q
    ||||||| ||||||| || |||||||||||| ||||||| || ||||||||||| ||  ||||||  |||||||||||||| | | ||||||||    
T  39870728 ttttaaaattcaaaaattgatgattacgttt-tttaattacatccctatgtaaaaatacgtttttgattttagtccctctaattaaaccagttg 39870636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 13645126 - 13645043
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaa 102  Q
    ||||| |||||||| ||| || |||| |||| |||| ||||  |||||||||||| || |||||| |||||||||||||||||||    
T  13645126 ttttacatttcaaattttgattattatgttt-tttattttcgtccctatgtaaatttgcgtttttggttttagtccctctactaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 13645262 - 13645349
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaat-ttcacccctatgtaaatatgtgttttttgttttagtccctctactaac 103  Q
    ||||||||||||||| ||| ||||||| |||| |||  | |||  |||||||||||| || |||||  ||||||||||||||||||||    
T  13645262 gttttaaatttcaaattttgatgattatgttttttttttcttcttccctatgtaaatttgcgttttaggttttagtccctctactaac 13645349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 26538746 - 26538797
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgt 68  Q
    ||||||||||||||| ||||||||||| |||| |||||||||  ||||||||    
T  26538746 gttttaaatttcaaatttttatgattaagtttttttaatttcgtccctatgt 26538797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 27361469 - 27361399
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgtttta 89  Q
    ||||||| |||||||||| ||  ||| |||| |||||||||| |||||||||||| ||||||||| ||||||    
T  27361469 ttttaaaattcaaaatttgatatttaggttt-tttaatttcatccctatgtaaatttgtgtttttggtttta 27361399  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 34594525 - 34594455
Alignment:
Q  27 tcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    ||||||||  ||||||| |||| |||||||||| |||||||||||| |  |||||| |||||||||||||||    
T  34594525 tcaaaattcaatgattatgttt-tttaatttcatccctatgtaaatttccgtttttggttttagtccctcta 34594455  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 25529691 - 25529773
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    ||||||| |||||||  | ||| |||| ||| ||||||| || |||| |||||| || ||||||| |||||||||||||||||    
T  25529691 ttttaaaattcaaaaactgatgtttacatttttttaattacatccctgtgtaaaaatatgtttttggttttagtccctctact 25529773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32615395 - 32615472
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccct 95  Q
    ||||||||||||||||||  || |||||||| || ||||||  ||||||| |||| || |||||| ||||| ||||||    
T  32615395 ttttaaatttcaaaatttggtgtttacgttttttcaatttcgtccctatgcaaatttgcgtttttggttttggtccct 32615472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 20340166 - 20340214
Alignment:
Q  61 ccctatgtaaatatgtgttttttgttttagtccctctactaacaccagt 109  Q
    ||||||||||| ||| |||||| ||||| |||||| |||||||||||||    
T  20340166 ccctatgtaaaaatgcgtttttggttttggtccctatactaacaccagt 20340214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 27661224 - 27661192
Alignment:
Q  198 acgaaaactgacggcagagatcaatttcaaaaa 230  Q
    |||||||||||||||||||| ||||||||||||    
T  27661224 acgaaaactgacggcagagaccaatttcaaaaa 27661192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 19639737 - 19639848
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  19639737 aaggtggaaaaa-tgagttttaaatttcaaaatttgatgattacgttt-tttaatttcatccctatgtaaacatgcgttttttgttttaatccctctact 19639834  T
Q  101 aacaccagttgtca 114  Q
    |||| | |||||||    
T  19639835 aacaacggttgtca 19639848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 38758083 - 38758193
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||| | ||| ||||||||| |||||||| ||||||| |||| |||||||||  ||||||||||| |||||||||| |||||||||||||||||    
T  38758083 aaggtggaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctact 38758182  T
Q  101 aacaccagttg 111  Q
    || ||||||||    
T  38758183 aagaccagttg 38758193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 5974428 - 5974339
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacacca 107  Q
    ||||||||||||||| ||| ||||||| |||| |||||||| | |||| ||||||| |||||||||| |||||||| ||||||||||||||    
T  5974428 gttttaaatttcaaactttgatgattatgttt-tttaattttatccctgtgtaaatttgtgttttttattttagtcgctctactaacacca 5974339  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38756959 - 38756847
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttctttaatttcac-ccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||| | ||  ||| ||||||||||| ||| |||||||||||| |||||||| |  ||||||||||| |||||||||| |||||||||||||||    
T  38756959 aaggtggaaagattggatttaaaatttcaaaaatttgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctcta 38756860  T
Q  99 ctaacaccagttg 111  Q
    |||| | ||||||    
T  38756859 ctaagagcagttg 38756847  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 5975439 - 5975524
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaac 103  Q
    ||||||||||| ||| ||| ||||||| |||| |||||||||  |||||||||||| ||  ||||||||||||||||||||||||||    
T  5975439 gttttaaattttaaattttgatgattatgttt-tttaatttcgtccctatgtaaatttgcattttttgttttagtccctctactaac 5975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 30046061 - 30045978
Alignment:
Q  19 tttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaa 102  Q
    |||||||| |||||||| || ||||  ||| |||||||||  ||||||||||| ||  |||||| |||||||||||||||||||    
T  30046061 tttaaattccaaaatttgattattatatttttttaatttcgtccctatgtaaaaatacgtttttggttttagtccctctactaa 30045978  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 37556305 - 37556387
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    ||||||| ||||||| || ||| |||||||| ||||||| || |||| |||||| ||  |||||| |||||||||||||||||    
T  37556305 ttttaaaattcaaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 37556387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 41592978 - 41593056
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctct 97  Q
    ||||||| |||||||||| ||| |||| ||| |||||||||| |||||||| ||| |  |||||| ||||||||||||||    
T  41592978 ttttaaaattcaaaatttgatgtttactttt-tttaatttcatccctatgtcaattttcgtttttggttttagtccctct 41593056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 19638756 - 19638722
Alignment:
Q  76 tgttttttgttttagtccctctactaacaccagtt 110  Q
    ||||||||||||||||||||||||||| |||||||    
T  19638756 tgttttttgttttagtccctctactaagaccagtt 19638722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20207993 - 20207936
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttca 59  Q
    |||||||||||| ||| |||||||||||||||||  |||||||| ||| ||||||||||    
T  20207993 aaggtggaaatattgatttttaaatttcaaaattagatgattacattt-tttaatttca 20207936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 44690340 - 44690181
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| ||  |||||||||||||||||  |||||||||||| |||||||||| || ||||||||||| ||||||| ||||||||||||| | |    
T  44690340 aaggtggaaatattggtttttaaatttcaaaattcgatgattacgttt-tttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 44690243  T
Q  101 aacaccagttgtcatctgtcaggccatataagcgtgtttttccatctcatcaattgtcacgt 162  Q
    |||| || || |||||| ||| |||| |||||| |||||| ||| |||| ||| || |||||    
T  44690242 aacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgt 44690181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7274420 - 7274521
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| | ||||||||| |||||| ||| ||||||| |||| |||| ||||| |||||||||||| ||  ||||| ||||||||| ||||| |    
T  7274420 aaggtggaaataataagttttaaaattcaaattttgatgattatgttt-tttattttcatccctatgtaaatttgcatttttggttttagtctctctaat 7274518  T
Q  101 aac 103  Q
    |||    
T  7274519 aac 7274521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 27411005 - 27411101
Alignment:
Q  29 aaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatctgtcaggcca 126  Q
    ||||||| ||| ||| |||| |||||||||| |||||||||||| ||||||||| |||||||||| | || |||||| | || |||||| ||| ||||    
T  27411005 aaaatttgatgtttaggttt-tttaatttcatccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctctcatgcca 27411101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 37964403 - 37964488
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacac 105  Q
    ||||||| |||||||||| |||  |||||||  ||| ||||| |||||||||||| |  |||||| |||||||||||| || ||||||    
T  37964403 ttttaaaattcaaaatttaatgtctacgttt--ttattttcatccctatgtaaattttcgtttttggttttagtccctgtattaacac 37964488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31559295 - 31559471
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| ||| |||||||||||||||||  |||||||||| | |||||||||| ||||||||||||||  |||||| |||||||||| | || |    
T  31559295 aaggtggaaatattgatttttaaatttcaaaattcgatgattacgtgt-tttaatttcatccctatgtaaatattcgtttttggttttagtccttgtaat 31559393  T
Q  101 aacaccagttgtcatctgtcaggccatataagcgtgtttttccatctcatcaattgtcacgtttgcgttcgttagcca 178  Q
     ||| || || |||||| ||| |||| |||| |||||||| ||| |||||||| || || || ||| | |||||||||    
T  31559394 cacaacacttatcatctctcatgccacataaacgtgttttgccaactcatcaagtgacatgtgtgcctccgttagcca 31559471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 44904829 - 44904709
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttcttt--aatttcac-ccctatgtaaatatgtgttttttgttttagtccctc 96  Q
    |||||||||| | || |||| ||||||||||| ||| |||||||||||| |||  |||||||  ||||||||||| ||||||||||  ||||||||||||    
T  44904829 aaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttttaatttcagtccctatgtaaaaatgtgtttttcattttagtccctc 44904730  T
Q  97 tactaacaccagttgtcatct 117  Q
    |||||| | ||||||||||||    
T  44904729 tactaagagcagttgtcatct 44904709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 28167107 - 28167202
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttcttt--aatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttg 111  Q
    ||||||||| |||||||| ||||||| |||| |||  ||||||  ||||||||||| ||| ||||||  |||||||||||||||||| ||||||||    
T  28167107 ttttaaattccaaaatttgatgattatgtttttttttaatttcgtccctatgtaaaaatgcgtttttgattttagtccctctactaagaccagttg 28167202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28165955 - 28165852
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttctttaatttcacccct-atgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||| | || |||| ||||||||||| ||| |||||||||||| ||||||||||  ||| ||||||| ||| | |||| |||||||||||||||    
T  28165955 aaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccttatgtaaaaatgcgcttttcgttttagtccctcta 28165856  T
Q  99 ctaa 102  Q
    ||||    
T  28165855 ctaa 28165852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 44905952 - 44906028
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccc 94  Q
    ||||||||| |||||||| ||||||| |||| |||||||||  ||||||||||| |||  ||||| |||||||||||    
T  44905952 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcatttttggttttagtccc 44906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 30547807 - 30547876
Alignment:
Q  4 gtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatat 74  Q
    ||||||| | |||||||||||||| ||||||| ||||||| |||| |||||||||  || |||||||||||    
T  30547807 gtggaaagaatgagttttaaattttaaaatttgatgattatgttt-tttaatttcgtccttatgtaaatat 30547876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5696138 - 5696234
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||||| |  |||||||| |||||| ||| ||||||| |||| |||| ||||  |||| ||||||| |  |||||| |||||||||||||||    
T  5696138 aaggtggaaataatatgttttaaaattcaaattttgatgattatgttt-tttattttcgtccctgtgtaaatttacgtttttggttttagtccctcta 5696234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 9419558 - 9419705
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||| | ||  |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||  |||||| |||||| |||||||| |    
T  9419558 aaggtggaaagattggtttttaaatttcaaaatttgatgattacgttt-tttaatttcatccctatgtaaatattcgtttttggttttattccctctaat 9419656  T
Q  101 aacaccagttgtcatctgtcaggccatataagcgtgtttttccatctca 149  Q
     ||| || || |||| | ||| |||| ||||||||||||| ||| ||||    
T  9419657 cacaacacttatcatatttcatgccacataagcgtgttttgccaactca 9419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 13223207 - 13223100
Alignment:
Q  4 gtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaac 103  Q
    ||||||| | ||| ||||||||| |||||||| ||||||| |||| |||||||||  ||||||||||| ||| |||||| ||||||||||||||||||||    
T  13223207 gtggaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctctactaac 13223108  T
Q  104 accagttg 111  Q
    || |||||    
T  13223107 actagttg 13223100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 13229034 - 13229152
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttctttaatttcac-ccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||| | || |||| |||||||||||  || |||||||||||| |||||||| |  ||||||||||| |||||||||| |||||||||||||||    
T  13229034 aaggtggaaagattgggtttaaaatttcaaaaaattgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctcta 13229133  T
Q  99 ctaacaccagttgtcatct 117  Q
    |||| | ||||||||||||    
T  13229134 ctaagagcagttgtcatct 13229152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 27524573 - 27524465
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatct 117  Q
    ||||||| |||||||||| ||| |||||||| || ||||||| |||||||||||| ||||||||| |||||||||||| ||||||||| | || ||||||    
T  27524573 ttttaaaattcaaaatttgatgtttacgttt-ttaaatttcatccctatgtaaatttgtgtttttggttttagtccctgtactaacactacttatcatct 27524475  T
Q  118 gtcaggccat 127  Q
     ||| |||||    
T  27524474 ctcatgccat 27524465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 28253388 - 28253497
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtcatct 117  Q
    ||||||| |||||||||| ||| |||| ||| |||||||||| |||||||||||| |  ||||||  ||||||||||||||||||||| | || ||||||    
T  28253388 ttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaacactacttatcatct 28253487  T
Q  118 gtcaggccat 127  Q
     ||| |||||    
T  28253488 ctcatgccat 28253497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 12097714 - 12097809
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtca 114  Q
    ||||||| ||||||| || || |||| |||| |||||||||| |||||  |||| ||| |||||| ||||||||||||||||||| |||||||||||    
T  12097714 ttttaaaattcaaaaattgataattaagttt-tttaatttcatccctacctaaaaatgcgtttttggttttagtccctctactaagaccagttgtca 12097809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 40767920 - 40767802
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttctttaatttcacccct-atgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||| | || |||| || |||||||| ||| |||||||||||| |||| |||||  ||| ||||||| ||| |||||| |||||||||||||||    
T  40767920 aaggtggaaaaattgggtttaaattttcaaaaatttgatgattacgtttttttagtttcagtccttatgtaaaaatgcgtttttcgttttagtccctcta 40767821  T
Q  99 ctaacaccagttgtcatct 117  Q
    |||| | |||||| |||||    
T  40767820 ctaagagcagttgccatct 40767802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 37401306 - 37401220
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgtttttt-gttttagtccctctactaaca 104  Q
    |||||||  ||||||||| ||| |||| ||| ||||| |||| |||||||||||| |||||||||| |||||||||||| ||||||||    
T  37401306 ttttaaaaatcaaaatttgatgtttaccttt-tttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaaca 37401220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 32849702 - 32849784
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    ||||||| ||||||| || ||| |||||||| ||||||| || |||| |||||| ||  |||||| |||||||||||||||||    
T  32849702 ttttaaaattcaaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 32849784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 11429512 - 11429430
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    ||||||| ||||||| || ||| |||| ||| ||||||| || |||| |||||| ||  |||||| |||||||||||||||||    
T  11429512 ttttaaaattcaaaaattgatgtttacatttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 11429430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11148642 - 11148533
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| ||| ||| ||||| |||||||| ||||||| |||| |||||||||  ||||||||||| |||||||||| |||||||||||||||||    
T  11148642 aaggtggaaataatgaattt-aaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctact 11148544  T
Q  101 aacaccagttg 111  Q
    || | ||||||    
T  11148543 aagatcagttg 11148533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 34538425 - 34538307
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaatttt-atgattacgtttctttaatttcac-ccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||||| | || |||| ||||||||||| ||| |||||||||||| ||||||||||  ||||||||||| ||| |||||| |||||||||||||||    
T  34538425 aaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgttttagtccctcta 34538326  T
Q  99 ctaacaccagttgtcatct 117  Q
    |||| | |||||| |||||    
T  34538325 ctaagagcagttgccatct 34538307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34539564 - 34539674
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttcttt-aatttcacccctatgtaaatatgtgttttttgttttagtccctctac 99  Q
    |||| ||||| | ||| ||||||||| |||||||| ||||||| |||| ||| ||||||  ||||||||||| |||  ||||||||||||||||||||||    
T  34539564 aagggggaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgc-ttttttgttttagtccctctac 34539662  T
Q  100 taacaccagttg 111  Q
    ||| ||||||||    
T  34539663 taagaccagttg 34539674  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20946151 - 20946050
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||||| |  |||||||| |||||| ||| |||||||  ||| |||| ||||  |||| ||||||| ||||||||| ||||||||||||||| |    
T  20946151 aaggtggaaataatatgttttaaaattcaaattttgatgattatattt-tttattttcgtccctgtgtaaatttgtgtttttggttttagtccctctaat 20946053  T
Q  101 aac 103  Q
    |||    
T  20946052 aac 20946050  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 2671816 - 2671736
Alignment:
Q  17 gttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctcta 98  Q
    |||||||| |||||| ||| ||||||| |||| |||| ||||  |||||||||||| || |||||| |||||||||||||||    
T  2671816 gttttaaaattcaaattttgatgattatgttt-tttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33489666 - 33489775
Alignment:
Q  1 aaggtggaaatactgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctact 100  Q
    |||||||||| | ||| |||||||||||||||||| ||||||| |||| ||||||| |  ||||||||||| ||| |||||| || ||||||||||||||    
T  33489666 aaggtggaaagaatgaattttaaatttcaaaatttgatgattatgttt-tttaattccgtccctatgtaaaaatgcgtttttggtattagtccctctact 33489764  T
Q  101 aacaccagttg 111  Q
    || ||||||||    
T  33489765 aagaccagttg 33489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 28592289 - 28592239
Alignment:
Q  112 tcatctgtcaggccatataagcgtgtttttccatctcatcaattgtcacgt 162  Q
    ||||||||||||||| ||||||||||||| |||| ||| |||||| |||||    
T  28592289 tcatctgtcaggccacataagcgtgttttgccatgtcagcaattgccacgt 28592239  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 1134426 - 1134325
Alignment:
Q  14 tgagttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctctactaacaccagttgtc 113  Q
    ||||||||||||||||||| || ||||||| |||| | ||||||   ||||||||||||||| |||||| | |||||||||||||||||  |||||||||    
T  1134426 tgagttttaaatttcaaaaattgatgattatgttt-tctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaagtccagttgtc 1134329  T
Q  114 atct 117  Q
    ||||    
T  1134328 atct 1134325  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 28050114 - 28050193
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgttttttgttttagtccctct 97  Q
    |||||||||| ||| ||| ||| |||| ||| |||||||||| ||||| ||||||||| ||||||| |||||||||||||    
T  28050114 ttttaaattttaaattttgatgtttacttttttttaatttcatccctacgtaaatatgcgttttttattttagtccctct 28050193  T

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Target: scaffold0517 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 6770 - 6856
Alignment:
Q  18 ttttaaatttcaaaattttatgattacgtttctttaatttcacccctatgtaaatatgtgtttttt-gttttagtccctctactaaca 104  Q
    |||||||  ||||||||| ||| |||| ||| ||||| |||| |||||||||||| |||||||||| |||||||||||| ||||||||    
T  6770 ttttaaaaatcaaaatttgatgtttaccttt-tttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaaca 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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