View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319_low_29 (Length: 228)
Name: NF8319_low_29
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_29 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4783700 - 4783934
Alignment:
| Q |
1 |
tggtaacatctaaatcacaaatatataaattgaagaaacactaaaacnnnnnnnnn-----------ctgtctctagaagctgagcaataaaactaatta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4783700 |
tggtaacatctaaatcacaaatatataaattgaagaaacactaaaacaaaacaaaaaaacaaaaaaactgtctctagaagctgagcaataaaactaa--- |
4783796 |
T |
|
| Q |
90 |
aacttaaaatatggtctagtctcccataataaaactctaccttatatagaatattgaaagtagatatatatttgaccnnnnnnnngtatatattatgtat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
4783797 |
-acttaaaatatggtctagtctcccataataaaactctaccttatatagaatattgaaagtagatatatatttgaccaaaaaaaagaatatattatgtat |
4783895 |
T |
|
| Q |
190 |
atattgttgttttaatgattattattgaatttgaccacc |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4783896 |
atattgttgttttaatgattattattaaatttgaccacc |
4783934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University