View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_3 (Length: 637)

Name: NF8319_low_3
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_3
NF8319_low_3
[»] chr8 (15 HSPs)
chr8 (7-620)||(11059353-11059966)
chr8 (22-223)||(41336096-41336297)
chr8 (320-383)||(24326101-24326164)
chr8 (314-383)||(30191072-30191141)
chr8 (303-346)||(4560609-4560652)
chr8 (299-346)||(7008705-7008752)
chr8 (298-405)||(7918697-7918802)
chr8 (298-341)||(38602439-38602482)
chr8 (446-492)||(3645920-3645966)
chr8 (399-448)||(34770862-34770912)
chr8 (302-383)||(2487927-2488008)
chr8 (302-346)||(3112230-3112274)
chr8 (447-487)||(5290566-5290606)
chr8 (399-431)||(9834839-9834871)
chr8 (399-431)||(35869825-35869857)
[»] chr7 (16 HSPs)
chr7 (7-222)||(29766836-29767051)
chr7 (302-377)||(1418495-1418570)
chr7 (446-537)||(7100723-7100811)
chr7 (294-342)||(30748945-30748993)
chr7 (401-470)||(24909611-24909682)
chr7 (300-341)||(19302480-19302521)
chr7 (302-383)||(30751589-30751670)
chr7 (314-379)||(33894701-33894766)
chr7 (303-346)||(7513666-7513709)
chr7 (399-448)||(1417234-1417284)
chr7 (297-383)||(4970706-4970791)
chr7 (503-537)||(30133927-30133961)
chr7 (301-339)||(34036031-34036069)
chr7 (297-382)||(8427084-8427169)
chr7 (405-468)||(24895306-24895370)
chr7 (442-490)||(45078215-45078263)
[»] chr5 (19 HSPs)
chr5 (22-200)||(2608205-2608383)
chr5 (292-355)||(36796616-36796679)
chr5 (301-382)||(11297114-11297195)
chr5 (300-370)||(25720334-25720404)
chr5 (389-431)||(39823161-39823203)
chr5 (302-383)||(499650-499731)
chr5 (299-356)||(33961780-33961837)
chr5 (309-356)||(5377123-5377170)
chr5 (309-356)||(16016352-16016399)
chr5 (447-534)||(20982240-20982326)
chr5 (302-377)||(34975440-34975514)
chr5 (295-348)||(42034165-42034218)
chr5 (446-486)||(7096231-7096271)
chr5 (301-369)||(10638453-10638521)
chr5 (301-345)||(14331474-14331518)
chr5 (298-338)||(35299880-35299920)
chr5 (301-369)||(36639606-36639674)
chr5 (400-439)||(40120099-40120139)
chr5 (298-346)||(41535019-41535067)
[»] chr2 (23 HSPs)
chr2 (298-383)||(18884937-18885022)
chr2 (300-383)||(3973612-3973695)
chr2 (302-377)||(22878174-22878249)
chr2 (399-448)||(6993774-6993824)
chr2 (298-383)||(19243603-19243688)
chr2 (302-354)||(40077430-40077482)
chr2 (443-489)||(11488199-11488245)
chr2 (399-448)||(11513868-11513918)
chr2 (301-383)||(43529776-43529858)
chr2 (297-362)||(15370237-15370302)
chr2 (302-382)||(5759494-5759574)
chr2 (298-346)||(40759267-40759315)
chr2 (301-383)||(8017504-8017586)
chr2 (320-354)||(12037910-12037944)
chr2 (320-370)||(34927046-34927096)
chr2 (298-383)||(1318306-1318390)
chr2 (302-383)||(4350760-4350841)
chr2 (298-383)||(9996808-9996893)
chr2 (297-346)||(31096409-31096458)
chr2 (298-346)||(1830146-1830194)
chr2 (401-448)||(35755554-35755602)
chr2 (399-431)||(39983330-39983362)
chr2 (298-346)||(44438756-44438804)
[»] chr1 (28 HSPs)
chr1 (298-383)||(23373228-23373313)
chr1 (301-369)||(12564417-12564485)
chr1 (333-404)||(50581697-50581768)
chr1 (302-364)||(6292581-6292643)
chr1 (399-448)||(25006084-25006134)
chr1 (298-379)||(32515356-32515437)
chr1 (302-370)||(27807198-27807266)
chr1 (304-383)||(4549462-4549541)
chr1 (301-356)||(4622190-4622245)
chr1 (304-383)||(5157142-5157221)
chr1 (402-448)||(7218127-7218174)
chr1 (302-364)||(601129-601191)
chr1 (297-383)||(2295167-2295252)
chr1 (399-448)||(5592735-5592785)
chr1 (399-448)||(17269220-17269270)
chr1 (399-448)||(25479551-25479601)
chr1 (399-448)||(27738230-27738280)
chr1 (300-365)||(3597198-3597263)
chr1 (304-377)||(17009503-17009576)
chr1 (398-438)||(29045961-29046002)
chr1 (309-370)||(47917332-47917393)
chr1 (298-346)||(10199323-10199371)
chr1 (399-431)||(12564924-12564956)
chr1 (399-431)||(25005847-25005879)
chr1 (401-448)||(30371118-30371166)
chr1 (304-356)||(34303178-34303230)
chr1 (322-370)||(44217454-44217502)
chr1 (302-346)||(48748514-48748558)
[»] chr4 (24 HSPs)
chr4 (314-383)||(21157838-21157907)
chr4 (14-143)||(22664348-22664477)
chr4 (14-143)||(22668827-22668956)
chr4 (309-384)||(54277249-54277324)
chr4 (309-383)||(18628479-18628553)
chr4 (308-369)||(28615608-28615669)
chr4 (302-370)||(2811554-2811622)
chr4 (298-370)||(8328034-8328106)
chr4 (445-492)||(2980574-2980621)
chr4 (312-375)||(27725292-27725355)
chr4 (304-383)||(37636107-37636186)
chr4 (301-384)||(51560207-51560290)
chr4 (298-355)||(22662166-22662223)
chr4 (298-355)||(22666645-22666702)
chr4 (298-331)||(39691064-39691097)
chr4 (446-487)||(41241648-41241689)
chr4 (302-342)||(1133039-1133079)
chr4 (446-490)||(4191661-4191705)
chr4 (297-341)||(17822779-17822823)
chr4 (399-431)||(24444026-24444058)
chr4 (301-341)||(27043748-27043788)
chr4 (503-535)||(30090135-30090167)
chr4 (399-431)||(30207621-30207653)
chr4 (452-488)||(46053624-46053660)
[»] chr3 (17 HSPs)
chr3 (297-383)||(20192520-20192606)
chr3 (309-379)||(22667477-22667547)
chr3 (309-379)||(22724116-22724186)
chr3 (300-341)||(16072958-16072999)
chr3 (299-383)||(45541641-45541725)
chr3 (302-370)||(45590734-45590802)
chr3 (402-475)||(20669561-20669636)
chr3 (301-368)||(30657371-30657438)
chr3 (291-369)||(1395723-1395801)
chr3 (399-448)||(21872321-21872371)
chr3 (446-492)||(52450156-52450202)
chr3 (309-382)||(2923549-2923622)
chr3 (298-331)||(15304283-15304316)
chr3 (402-431)||(19679813-19679842)
chr3 (302-383)||(50211805-50211886)
chr3 (399-431)||(41057026-41057058)
chr3 (448-488)||(48528502-48528542)
[»] chr6 (13 HSPs)
chr6 (309-370)||(33067241-33067302)
chr6 (301-377)||(8010433-8010509)
chr6 (402-448)||(2112171-2112217)
chr6 (298-356)||(2457038-2457096)
chr6 (399-448)||(4006684-4006734)
chr6 (302-383)||(8420115-8420197)
chr6 (297-383)||(32171297-32171383)
chr6 (301-346)||(7351589-7351634)
chr6 (446-487)||(28130029-28130070)
chr6 (404-448)||(32386618-32386663)
chr6 (399-431)||(7485118-7485150)
chr6 (302-346)||(13908347-13908391)
chr6 (295-351)||(32205925-32205981)
[»] scaffold0455 (1 HSPs)
scaffold0455 (446-487)||(8616-8657)


Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 7 - 620
Target Start/End: Original strand, 11059353 - 11059966
Alignment:
Q  7 tttggtgttgctagaacaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaat 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059353 tttggtcttgctagaacaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaat 11059452  T
Q  107 atacagcagccattgatatatggtctgttggttgcatacttggtgaaatcgtaacaagacaacccctctttcctggaagagattatgttcatcagctgag 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059453 atacagcagctattgatatatggtctgttggttgcatacttggtgaaatcgtaacaagacaacccctctttcctggaagagattatgttcatcagctgag 11059552  T
Q  207 actggtcacagaggtattcactattcacttgataacttaaatggaattttctgctagactctttaattgctaaatgtgtacttagacttgaggcctgttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059553 actggtcacagaggtattcactattcacttgataacttaaatgaaattttctgctagactctttaattgctaaatgtgtacttagacttgaggcctgttt 11059652  T
Q  307 gaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttatccataagctgttttcagcttatg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11059653 gaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttctcgaaacagcttatccataagctgttttcagcttatg 11059752  T
Q  407 aaaacaacctatagcttatatgaaacaatttgaccttatttttgttatagagatagcttatacacaagtacttgtatgataaacacatacacaataaagc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059753 aaaacaacctatagcttatatgaaacaatttgaccttatttttgttatagagatagcttatacacaagtacttgtatgataaacacatacacaataaagc 11059852  T
Q  507 atttaattgagttgtttatccaaacagggtcagattatattttcatttgtttgtatttattttgccccttttaggtcttgatgttgtatctacttttaaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11059853 atttaattgagttgtttatccaaacagggtcagattatattttcatttgtttgtatttattttgccccttttaggtcttgatgttgtatctacttttaaa 11059952  T
Q  607 ttagagtgctagct 620  Q
    ||||||| ||||||    
T  11059953 ttagagttctagct 11059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 41336297 - 41336096
Alignment:
Q  22 acaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaatatacagcagccattg 121  Q
    |||||||| ||||||||||||||||| ||||| || || || || ||||||||||| || ||| |||| || |||||||| || || ||  | || || |    
T  41336297 acaacatctgaaacagatttcatgactgagtatgttgtcacaagatggtacagagccccagaattgctcctcaattgttctgagtacacttctgcaatcg 41336198  T
Q  122 atatatggtctgttggttgcatacttggtgaaatcgtaacaagacaacccctctttcctggaagagattatgttcatcagctgagactggtcacagaggt 221  Q
    || | |||||||||||||||||| ||||||||||  | || ||| | ||| | |||||||| | ||| ||||||||||| || || ||  ||||||||||    
T  41336197 atgtttggtctgttggttgcatatttggtgaaattatgaccagagagcccttgtttcctggcaaagactatgttcatcaactaaggcttatcacagaggt 41336098  T
Q  222 at 223  Q
    ||    
T  41336097 at 41336096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 24326164 - 24326101
Alignment:
Q  320 tgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||||||| || ||||||||||| | ||||||| ||||||||||||| ||||||| ||||    
T  24326164 tgagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaacagtttat 24326101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 30191072 - 30191141
Alignment:
Q  314 cttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||| |||| ||||||| || ||||||||||| | ||||||| ||||||||||||| |||||| |||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttat 30191141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 4560652 - 4560609
Alignment:
Q  303 gtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcactt 4560609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 7008752 - 7008705
Alignment:
Q  299 gcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||||||||||||| |||| ||||||| || |||||||||||    
T  7008752 gcctgtttgaattgacttatttgagtttatctactggcataagcactt 7008705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 7918697 - 7918802
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttatccataagctgtttt 397  Q
    |||||||||||||||| |||| | | |||||||| |  ||||| ||||| | ||||||| |||||||||||||  ||||| |||||  |||| |||||||    
T  7918697 ggcctgtttgaattga-ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat-tataatctgtttt 7918794  T
Q  398 cagcttat 405  Q
    ||||||||    
T  7918795 cagcttat 7918802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 38602482 - 38602439
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataag 341  Q
    |||||||||| |||||||||| |||||||||||| |||||||||    
T  38602482 ggcctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 3645920 - 3645966
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgataaacac 492  Q
    |||| ||||||| |||||||||||||||| |||| ||||||||||||    
T  3645920 ttttcttatagaaatagcttatacacaagcacttatatgataaacac 3645966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 34770912 - 34770862
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||||||||| ||| |||||||||||| |||||||    
T  34770912 agcttatgaaaacaacttatagcttaaatgaaaacaatttgactttatttt 34770862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 2487927 - 2488008
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| |||| ||||| |||| | ||||| |||||||||||||| | ||||||| ||||||| |||||  ||||| |||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttat 2488008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 3112274 - 3112230
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||    
T  3112274 tgtttggattgacttatgtaagcttatttattgacataagcactt 3112230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 5290606 - 5290566
Alignment:
Q  447 tttgttatagagatagcttatacacaagtacttgtatgata 487  Q
    ||||||||||| |||||||||||| ||| ||||||||||||    
T  5290606 tttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 9834839 - 9834871
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  9834839 agcttatgaaaacaacttatagcttatatgaaa 9834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 35869857 - 35869825
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  35869857 agcttatgaaaacaacttatagcttatatgaaa 35869825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 29767051 - 29766836
Alignment:
Q  7 tttggtgttgctagaacaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaat 106  Q
    |||||| | |||||||| || || ||||| ||||||||||| ||||| ||||||||| | |||||| ||||||| ||| ||||||| |||||||||||||    
T  29767051 tttggtctagctagaactacgtctgaaactgatttcatgactgagtatgtggttactcgatggtaccgagctccagaattgcttctaaattgttcagaat 29766952  T
Q  107 atacagcagccattgatatatggtctgttggttgcatacttggtgaaatcgtaacaagacaacccctctttcctggaagagattatgttcatcagctgag 206  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||| |||| || |||||||| | ||||||||| |||||||| |     
T  29766951 atactgcagccattgatatatggtctgttggttgcatccttggtgaaatcatgacaagaaaacctctatttcctgggaaagattatgtccatcagctcaa 29766852  T
Q  207 actggtcacagaggta 222  Q
    | || |||||||||||    
T  29766851 attgatcacagaggta 29766836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 1418570 - 1418495
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaaca 377  Q
    |||||| |||||||||| |||||||||||| || ||||||||||||| || |||| || |||||||||| ||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttatagaaaca 1418495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 7100723 - 7100811
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgataaacacatacacaataaagcatttaattgagttgtttatccaaacagggtc 537  Q
    |||||||||| | ||||||||  ||||||||||| |||||||||| | || || |||| |||||||||| ||| ||||||||||||||||||    
T  7100723 ttttgttataaaaatagctta--cacaagtacttatatgataaacgcttatactataa-gcatttaattaagtagtttatccaaacagggtc 7100811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 30748945 - 30748993
Alignment:
Q  294 ttgaggcctgtttgaattgacttatgtgagcttatctaatgacataagc 342  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  30748945 ttgaggcctgtttgaattgagttatttgagcttatctactgacataagc 30748993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 24909682 - 24909611
Alignment:
Q  401 cttatgaaaacaacctatagcttatatg-aaacaatttgacctta-tttttgttatagagatagcttataca 470  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||| ||||||||| ||| ||||||||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttataca 24909611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 19302480 - 19302521
Alignment:
Q  300 cctgtttgaattgacttatgtgagcttatctaatgacataag 341  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  19302480 cctgtttgaattgacttatttgagcttatctactgacataag 19302521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 30751670 - 30751589
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| ||| |||||| | | |||||||| |||||||||||||| |  |||||| ||||||||||||| ||||||| ||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttat 30751589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 33894766 - 33894701
Alignment:
Q  314 cttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagc 379  Q
    ||||| |||||||||| |||||||||||||||| | ||||||| || ||||||||||  |||||||    
T  33894766 cttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagc 33894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 7513709 - 7513666
Alignment:
Q  303 gtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||||||||| |||||||||||| || |||||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcactt 7513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 1417284 - 1417234
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| |||||||    
T  1417284 agcttatgaaaacaacttattgcttatatgaaaacaatttgactttatttt 1417234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 4970706 - 4970791
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||||| |||||||||| |||||||||||  |||||||||  ||| | ||||||| ||||||| |||||  ||||| |||||    
T  4970706 aggcctgtttggattgacttatttgagcttatctcgtgacataag-tcttgtgagactgtttgggagaacttatgaaaacaacttat 4970791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 537
Target Start/End: Complemental strand, 30133961 - 30133927
Alignment:
Q  503 aagcatttaattgagttgtttatccaaacagggtc 537  Q
    |||||||||||||||||||||||||||||| ||||    
T  30133961 aagcatttaattgagttgtttatccaaacatggtc 30133927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 34036069 - 34036031
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacata 339  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  34036069 ctgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 8427169 - 8427084
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagctta 382  Q
    |||||| |||| ||||| |||| |||||||||||| | ||||||| |||| | ||||||| |||| |||| ||| |||||| ||||    
T  8427169 aggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttgggggagcctatggaaacaactta 8427084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 24895370 - 24895306
Alignment:
Q  405 tgaaaacaacctatagcttatatg-aaacaatttgaccttatttttgttatagagatagcttata 468  Q
    |||||||||| ||||||||||||| ||| |||||||| ||| ||||||||  || ||||||||||    
T  24895370 tgaaaacaacttatagcttatatgaaaataatttgactttacttttgttaacgaaatagcttata 24895306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 490
Target Start/End: Complemental strand, 45078263 - 45078215
Alignment:
Q  442 ttatttttgttatagagatagcttatacacaagtacttgtatgataaac 490  Q
    |||||||||||||| | |||||||||||| ||| |||| ||||||||||    
T  45078263 ttatttttgttataaaaatagcttatacataagcacttatatgataaac 45078215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 2608205 - 2608383
Alignment:
Q  22 acaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaatatacagcagccattg 121  Q
    |||||||| ||||||||||| ||||| ||||| || |||||||| ||||||||||| || ||| |||| |||||||||||||| || ||| | || ||||    
T  2608205 acaacatccgaaacagattttatgacggagtatgtcgttactagatggtacagagccccagaattgctccttaattgttcagagtacacatctgcaattg 2608304  T
Q  122 atatatggtctgttggttgcatacttggtgaaatcgtaacaagacaacccctctttcctggaagagattatgttcatca 200  Q
    || | |||||||||||||||||| ||| ||||||  | || ||| ||||| | |||||||| |  ||||||||||||||    
T  2608305 atgtctggtctgttggttgcatatttgctgaaattatgaccagagaacccttgtttcctgggaaggattatgttcatca 2608383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 36796616 - 36796679
Alignment:
Q  292 acttgaggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactg 355  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||| | ||||||    
T  36796616 acttgaggcttgtttggattgacttatttgagcttatctaatgacataaacacttgtgagactg 36796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 382
Target Start/End: Original strand, 11297114 - 11297195
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagctta 382  Q
    |||||||||||||||||| | |||||||||| || ||||| ||||| ||||||||| ||  ||||||||| |||||| ||||    
T  11297114 ctgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaactta 11297195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 25720334 - 25720404
Alignment:
Q  300 cctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||||||||||  ||||| |||| ||||||| || ||||||||||| | |||||||||| ||||||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttat 25720404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 39823161 - 39823203
Alignment:
Q  389 agctgttttcagcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  39823161 agctgttttcagcttatgaaaacaacttgtagcttatatgaaa 39823203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 499650 - 499731
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| |||||||||| |||||||| ||| |||||||||||| | | || |||| ||||||| |||||  |||||||||||    
T  499650 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttat 499731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 33961837 - 33961780
Alignment:
Q  299 gcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    |||| |||||||||| |||| ||||||||||||  ||||||||||||||| |||||||    
T  33961837 gcctatttgaattgaattatttgagcttatctacggacataagcacttatgagactgt 33961780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 5377123 - 5377170
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    |||| ||||| |||||||||||| |||||||||||||| |||||||||    
T  5377123 attggcttatttgagcttatctattgacataagcacttgtaagactgt 5377170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 16016352 - 16016399
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    |||||||||| |||||||||| |||||||||||||||| | |||||||    
T  16016352 attgacttatttgagcttatcaaatgacataagcacttgtcagactgt 16016399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 20982240 - 20982326
Alignment:
Q  447 tttgttatagagatagcttatacacaagtacttgtatgataaacacatacacaataaagcatttaattgagttgtttatccaaacagg 534  Q
    ||||||||||| |||||||||||| ||| |||| |||||||| ||| ||  | || ||||| |||||  |||||||||||||||||||    
T  20982240 tttgttatagaaatagcttatacataagcacttatatgataagcacttatgctat-aagcacttaatgaagttgtttatccaaacagg 20982326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 34975514 - 34975440
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaaca 377  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||||| ||||||| ||  |||||| ||| |||||    
T  34975514 tgtttgaattgacttat-tgagcttatctactaacataatcacttatgagactgtttgaaagagctcatccaaaca 34975440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 42034218 - 42034165
Alignment:
Q  295 tgaggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttat 348  Q
    ||||||||||||| |||  ||||| |||||||| ||| ||||||||||||||||    
T  42034218 tgaggcctgtttggattagcttatttgagcttacctactgacataagcacttat 42034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 7096231 - 7096271
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgat 486  Q
    |||||||||||| |||||||||||| ||| |||||||||||    
T  7096231 ttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 10638453 - 10638521
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctta 369  Q
    ||||||| |||||||||| | || |||||||   |||||||||||| ||||||| | ||||||||||||    
T  10638453 ctgtttggattgacttatttaagattatctaccaacataagcacttgtaagactatttgggagagctta 10638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 14331518 - 14331474
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcact 345  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||    
T  14331518 ctgtttggattgacttatttgagcttatctactgtcataagcact 14331474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 35299920 - 35299880
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacat 338  Q
    |||||||||| |||||||||| |||||||||||| ||||||    
T  35299920 ggcctgtttggattgacttatttgagcttatctattgacat 35299880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 36639674 - 36639606
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctta 369  Q
    ||||||| |||| ||||| ||| |||| ||| | |||||||||||||||||||||| || |||| ||||    
T  36639674 ctgtttggattgtcttatttgaacttacctatttacataagcacttataagactgtttgagagaactta 36639606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 40120139 - 40120099
Alignment:
Q  400 gcttatgaaaacaacctatagcttatatg-aaacaatttga 439  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  40120139 gcttgtgaaaacaacctatagcttatatgaaaacaatttga 40120099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 41535019 - 41535067
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    ||||||||||||||| ||||| |||||| ||||| || |||||||||||    
T  41535019 ggcctgtttgaattggcttatttgagctcatctactgccataagcactt 41535067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 18885022 - 18884937
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||||| || |||||||  |||| |||||| ||||||||| |||| |||| |||| ||||||||||||| ||||||||||||    
T  18885022 ggcctgtttggatcgacttattcgagcgtatctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagcttat 18884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 3973695 - 3973612
Alignment:
Q  300 cctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||| ||| |||||| |||||||||| | ||| |||||||||||||||||||| || |||||| ||| |||||| |||||    
T  3973695 cctgtttggattcacttatttgagcttatccactgatataagcacttataagactgtttgagagagcatatggaaacaacttat 3973612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 22878249 - 22878174
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaaca 377  Q
    |||||| |||||||||| |||||||||| | |||||||||||||| | ||||||| ||||||| ||||| ||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaaca 22878174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 6993774 - 6993824
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaa-acaatttgaccttatttt 448  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  6993774 agcttatgaaaacaacctatagcttatatgaatataatttgaccttatttt 6993824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 19243688 - 19243603
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||| || |||||| ||| ||| |||||||| ||||||||||| || | ||||||| |||| |||||||| ||||||||||||    
T  19243688 ggcctgtatggattgacatatttgaacttatctactgacataagcatttctgagactgtttgggcgagcttatagaaacagcttat 19243603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 40077430 - 40077482
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagact 354  Q
    ||||||||||||||||| ||||||||| || |||||||||||||| |||||||    
T  40077430 tgtttgaattgacttatctgagcttatgtactgacataagcacttctaagact 40077482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 11488245 - 11488199
Alignment:
Q  443 tatttttgttatagagatagcttatacacaagtacttgtatgataaa 489  Q
    ||||||||||||||| |||| || |||||||||||||||||||||||    
T  11488245 tatttttgttatagaaatagtttttacacaagtacttgtatgataaa 11488199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 11513918 - 11513868
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  11513918 agcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttt 11513868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 43529776 - 43529858
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||||||||||||| |||||||||||| ||  |||||||||| | | ||||| |||||||  ||||  |||||||||||    
T  43529776 ctgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttat 43529858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 15370237 - 15370302
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctggga 362  Q
    ||||||||||| |||||||||| |||||||||||| || |||||||| || | ||||||| |||||    
T  15370237 aggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 5759494 - 5759574
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagctta 382  Q
    ||||||| || |||||| |||| ||||||| ||  ||||| |||| | ||||||| ||||||||||||| |||||||||||    
T  5759494 tgtttgagtttacttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatggaaacagctta 5759574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 40759315 - 40759267
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||| |||| ||||| |||||||||||| ||||||||||||||    
T  40759315 ggcctgtttggattgccttatttgagcttatctattgacataagcactt 40759267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 8017586 - 8017504
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||| |||||||||| |||| ||||||| |||||||||||||| |  || | | ||||||| |||||  |||||||||||    
T  8017586 ctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttat 8017504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 12037944 - 12037910
Alignment:
Q  320 tgagcttatctaatgacataagcacttataagact 354  Q
    ||||||||||||||||||||||||||| |||||||    
T  12037944 tgagcttatctaatgacataagcacttgtaagact 12037910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 34927096 - 34927046
Alignment:
Q  320 tgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||||||| || |||||||||||||||||||||||| ||| ||| |||||    
T  34927096 tgagcttatttactgacataagcacttataagactgtttggaagaacttat 34927046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 1318390 - 1318306
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||||||||||| | || |||| ||||||| || ||||||||||| | ||||||| || ||||||||||  ||||| |||||    
T  1318390 ggcctgtttgaattgagtaatttgagattatctactg-cataagcacttgtgagactgtttgtgagagcttatgaaaacatcttat 1318306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 4350841 - 4350760
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| |||| ||||| ||||||| |||| |||||||||||||||  ||| ||| || |||| |||||  |||||||||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttat 4350760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 383
Target Start/End: Complemental strand, 9996893 - 9996808
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||||  ||||||||| |||||||||| | |  |||||| |||| | ||||||  ||||||||||||| |||||| |||||    
T  9996893 ggcctgtttggcttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttatagaaacaacttat 9996808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 31096458 - 31096409
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||| ||||| ||||| ||| |||||||| ||||||||||||||    
T  31096458 aggcctgtttaaattggcttatttgaacttatctactgacataagcactt 31096409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 1830194 - 1830146
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||| |||||||||| |||| |||| || ||||||||||||||    
T  1830194 ggcctgtttggattgacttatttgagtttatttactgacataagcactt 1830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 35755554 - 35755602
Alignment:
Q  401 cttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||| ||||||||| ||| |||||||||||| |||||||    
T  35755554 cttatgaaaacaacttatagcttacatgaaaacaatttgactttatttt 35755602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 39983362 - 39983330
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  39983362 agcttatgaaaacaacttatagcttatatgaaa 39983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 44438756 - 44438804
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||||||||||||||| || ||||||||||||  ||||||| |||||    
T  44438756 ggcctgtttgaattgactgatttgagcttatctacagacataatcactt 44438804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 23373228 - 23373313
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||||||||||||||| ||| ||| |||| ||| |||||||||| | ||| ||| ||||||||||||| |||||| |||||    
T  23373228 ggcctgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttat 23373313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 12564417 - 12564485
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctta 369  Q
    |||||||||||||||||| ||||||||| || ||| |||||||||| |  |||||| ||||||||||||    
T  12564417 ctgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagctta 12564485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 50581697 - 50581768
Alignment:
Q  333 tgacataagcacttataagactgtctgggagagcttatcgaaacagcttatccataagctgttttcagctta 404  Q
    |||||||||||||  | ||||||||||| ||| |||||  ||||||||||| |||| |||||||||||||||    
T  50581697 tgacataagcactggtgagactgtctggaagaacttataaaaacagcttattcatatgctgttttcagctta 50581768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 6292643 - 6292581
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggaga 364  Q
    |||||| |||||||||| |||||||||||| |||||||||||||| | ||| ||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggaga 6292581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 25006084 - 25006134
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  25006084 agcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttt 25006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 32515356 - 32515437
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagc 379  Q
    |||||||||| |||  | ||| |||| ||||||| | |||||||||||| | ||||||| ||||||||||||| ||||||||    
T  32515356 ggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagc 32515437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 27807266 - 27807198
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||| ||||||||||| ||| ||| |||| ||||||||||| || ||||||||| || ||||||||||    
T  27807266 tgtttaaattgacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttat 27807198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 4549462 - 4549541
Alignment:
Q  304 tttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||| |||| ||||| |||| ||||||| || |||||||| || | ||||||| ||||||||||||| |||||| |||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttat 4549541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 4622245 - 4622190
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||| | |||||||    
T  4622245 ctgtttgaattgacttatttaagcttaactaatgacataagaacttgttagactgt 4622190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 5157221 - 5157142
Alignment:
Q  304 tttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||| |||||||||| ||| ||||||||  ||||||| ||||| | | ||||| ||||||||||||| |||||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 7218127 - 7218174
Alignment:
Q  402 ttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  7218127 ttatgaaaacaacttatagcttatatgaaaacaatttgactttatttt 7218174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 601191 - 601129
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggaga 364  Q
    |||||| |||||||||  ||||||||||| || |||||||||||| | ||||||| |||||||    
T  601191 tgtttggattgacttacttgagcttatctgataacataagcacttttgagactgtttgggaga 601129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 2295252 - 2295167
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||||||||||||| ||||| |||||||||||| || ||||||   || | ||||||| ||||||| |||||  |||||||||||    
T  2295252 aggcctgtttgaattggcttatttgagcttatctactggcataag-ttttgtgagactgtttgggagaacttatgaaaacagcttat 2295167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 5592735 - 5592785
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatga-aacaatttgaccttatttt 448  Q
    |||||||||||||||| |||||||||||||| ||||||| ||| |||||||    
T  5592735 agcttatgaaaacaacttatagcttatatgacaacaattcgactttatttt 5592785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 17269270 - 17269220
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| |||||||    
T  17269270 agcttatgaaaacaacttattgcttatatgaaaacaatttgactttatttt 17269220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 25479601 - 25479551
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaa-acaatttgaccttatttt 448  Q
    |||||||||||||||| |||||| |||||||| |||||||||| |||||||    
T  25479601 agcttatgaaaacaacttatagcctatatgaagacaatttgacgttatttt 25479551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 27738230 - 27738280
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  27738230 agcttatgaaaacaaattatagcttatatgaaaacaatttgactttatttt 27738280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 3597198 - 3597263
Alignment:
Q  300 cctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagag 365  Q
    |||||||| |||||||||| |||| ||||||||||| |||| ||||| | ||||||| ||| ||||    
T  3597198 cctgtttggattgacttatttgaggttatctaatgatataaccacttgtgagactgtttggaagag 3597263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 17009503 - 17009576
Alignment:
Q  304 tttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaaca 377  Q
    ||||||||||||||| |||| ||||||| ||||||||   ||| |  |||||| ||||||||||||| ||||||    
T  17009503 tttgaattgacttatttgagtttatctactgacataattccttgttggactgtttgggagagcttatggaaaca 17009576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 29045961 - 29046002
Alignment:
Q  398 cagcttatgaaaacaacctatagcttatatga-aacaatttg 438  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  29045961 cagcttatgaaaacaacttatagcttatatgagaacaatttg 29046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 47917393 - 47917332
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    |||||||||| |||||||||||| | | | |||||||||| ||||||| ||| |||||||||    
T  47917393 attgacttatttgagcttatctatttaaaaaagcacttatcagactgtatggaagagcttat 47917332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 10199323 - 10199371
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||| ||| |||||||||| |||||||||||| | ||||||||||||    
T  10199323 ggcctggttggattgacttatttgagcttatctactaacataagcactt 10199371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 12564924 - 12564956
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  12564924 agcttatgaaaacaacttatagcttatatgaaa 12564956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 25005847 - 25005879
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  25005847 agcttatgaaaacaacttatagcttatatgaaa 25005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 30371166 - 30371118
Alignment:
Q  401 cttatgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    |||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  30371166 cttatgaaaacaacttatagcttatatgaaaacaatttgagtttatttt 30371118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 34303178 - 34303230
Alignment:
Q  304 tttgaattgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    ||||||||||||| | ||||||||||||  ||||||||| ||| |||||||||    
T  34303178 tttgaattgacttgtttgagcttatctaccgacataagcccttgtaagactgt 34303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 44217502 - 44217454
Alignment:
Q  322 agcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    |||||||||| |||| ||||||||| ||||||| | |||||||||||||    
T  44217502 agcttatctactgacgtaagcacttgtaagactttttgggagagcttat 44217454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 48748514 - 48748558
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    ||||||||||||||||| |||||||||| | |||||||| |||||    
T  48748514 tgtttgaattgacttatttgagcttatccattgacataaacactt 48748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 21157907 - 21157838
Alignment:
Q  314 cttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||| |||||| ||||| |||||||||||||| ||||||||| ||| ||||||||  ||||||||||||    
T  21157907 cttatttgagctcatctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttat 21157838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 22664348 - 22664477
Alignment:
Q  14 ttgctagaacaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaatatacagc 113  Q
    |||| |||||||| || || ||||| |||||||| ||||| || || ||| | ||||| ||||| || ||| |||| || || |||||||||||||| ||    
T  22664348 ttgccagaacaacctctgagacagacttcatgacagagtatgttgtgactcgttggtatagagcccctgaattgctactgaactgttcagaatatactgc 22664447  T
Q  114 agccattgatatatggtctgttggttgcat 143  Q
     || |||||| ||||||| |||||||||||    
T  22664448 tgctattgatgtatggtcggttggttgcat 22664477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 22668827 - 22668956
Alignment:
Q  14 ttgctagaacaacatcagaaacagatttcatgaccgagtacgtggttactaggtggtacagagctcccgaactgcttcttaattgttcagaatatacagc 113  Q
    |||| |||||||| || || ||||| |||||||| ||||| || || ||| | ||||| ||||| || ||| |||| || || |||||||||||||| ||    
T  22668827 ttgccagaacaacctctgagacagacttcatgacagagtatgttgtgactcgttggtatagagcccctgaattgctactgaactgttcagaatatactgc 22668926  T
Q  114 agccattgatatatggtctgttggttgcat 143  Q
     || |||||| ||||||| |||||||||||    
T  22668927 tgctattgatgtatggtcggttggttgcat 22668956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 54277249 - 54277324
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttatc 384  Q
    |||||||||| ||| |||||||| |||||||| ||||||| |||||||  | |||||||||  |||||||||||||    
T  54277249 attgacttatttgaacttatctagtgacataaacacttatgagactgttagcgagagcttacagaaacagcttatc 54277324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 18628479 - 18628553
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| ||| |||||||||||| |||||||| ||||| | ||||||| |||||||||||||  ||||| |||||    
T  18628479 attgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 28615669 - 28615608
Alignment:
Q  308 aattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctta 369  Q
    ||||| ||||| |||||||||||||||||||||||| || ||||||||| | | ||||||||    
T  28615669 aattggcttatttgagcttatctaatgacataagcatttgtaagactgtttcgaagagctta 28615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 2811622 - 2811554
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||||||||||||||| |||| ||||||| || |||||||| |||| ||||||| || ||||| ||||    
T  2811622 tgtttgaattgacttatttgaggttatctactggcataagcatttatgagactgtttgagagagattat 2811554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 8328034 - 8328106
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||| ||||||||||  ||| |||||||||||| || ||||||||||||| ||||||| ||| | |||||||    
T  8328034 ggcctatttgaattgatgtatttgagcttatctattggcataagcacttatgagactgtttggaatagcttat 8328106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 492
Target Start/End: Original strand, 2980574 - 2980621
Alignment:
Q  445 tttttgttatagagatagcttatacacaagtacttgtatgataaacac 492  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||    
T  2980574 tttttgttatagaaatagcttatacataagcacttatatgataaacac 2980621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 27725355 - 27725292
Alignment:
Q  312 gacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaa 375  Q
    ||||||| |||||||||||| ||| |||||||| |||| |||||| || |||||||||| ||||    
T  27725355 gacttatttgagcttatctactgagataagcacatatacgactgtttgagagagcttatggaaa 27725292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 37636107 - 37636186
Alignment:
Q  304 tttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||| ||||| |||| |||| ||||||| | |||||||||| | ||| ||||| |||||||| |||| ||||||||||||    
T  37636107 tttggattgatttatttgagtttatctactaacataagcacctgtaaaactgtttgggagagtttatagaaacagcttat 37636186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 51560207 - 51560290
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttatc 384  Q
    |||||| |||||  |||| |||||||||||| || ||||||||||||| ||||| | ||||||| |||||  ||||| ||||||    
T  51560207 ctgtttcaattgctttatatgagcttatctactggcataagcacttatgagactctttgggagaccttatgaaaacaccttatc 51560290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 22662166 - 22662223
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactg 355  Q
    |||||||||| |||||||||| |||| ||||||| | ||||||||||| |||| ||||    
T  22662166 ggcctgtttggattgacttatttgagtttatctactaacataagcactcataacactg 22662223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 22666645 - 22666702
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactg 355  Q
    |||||||||| |||||||||| |||| ||||||| | ||||||||||| |||| ||||    
T  22666645 ggcctgtttggattgacttatttgagtttatctactaacataagcactcataacactg 22666702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 39691064 - 39691097
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatcta 331  Q
    ||||||||||||||||||||| ||||||||||||    
T  39691064 ggcctgtttgaattgacttatttgagcttatcta 39691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 41241648 - 41241689
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgata 487  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  41241648 ttttgttatagaaatagcttaaacacaagtacttatatgata 41241689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 1133079 - 1133039
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagc 342  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  1133079 tgtttgaattgacttatttgagcttatctactgacacaagc 1133039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 4191705 - 4191661
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgataaac 490  Q
    |||||||||||| |||||||||||| ||| |||| ||||||||||    
T  4191705 ttttgttatagaaatagcttatacataagcacttatatgataaac 4191661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 17822779 - 17822823
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataag 341  Q
    ||||||||||| ||| |||||| |||||||||||| |||||||||    
T  17822779 aggcctgtttggattaacttatttgagcttatctactgacataag 17822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 24444058 - 24444026
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  24444058 agcttatgaaaacaacttatagcttatatgaaa 24444026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 27043748 - 27043788
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataag 341  Q
    ||||||| |||||||||| |||||||||||| |||||||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 535
Target Start/End: Complemental strand, 30090167 - 30090135
Alignment:
Q  503 aagcatttaattgagttgtttatccaaacaggg 535  Q
    |||||||||||| ||||||||||||||||||||    
T  30090167 aagcatttaattaagttgtttatccaaacaggg 30090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 30207621 - 30207653
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  30207621 agcttatgaaaacaacttatagcttatatgaaa 30207653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 46053660 - 46053624
Alignment:
Q  452 tatagagatagcttatacacaagtacttgtatgataa 488  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  46053660 tatagagatagcttatacataagtacttatatgataa 46053624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 20192520 - 20192606
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||||| ||||||| || | |  ||||||| |||||||||||||| | | ||||| || |||||||||| ||||||||||||    
T  20192520 aggcctgtttggattgactaatttcaatttatctattgacataagcacttcttacactgtatgagagagcttatagaaacagcttat 20192606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 22667547 - 22667477
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagc 379  Q
    |||| ||||| |||||||||||| |||||||||||||| | ||||||| || ||||| |||| ||||||||    
T  22667547 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22667477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 22724186 - 22724116
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagc 379  Q
    |||| ||||| |||||||||||| |||||||||||||| | ||||||| || ||||| |||| ||||||||    
T  22724186 attggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22724116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 16072958 - 16072999
Alignment:
Q  300 cctgtttgaattgacttatgtgagcttatctaatgacataag 341  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  16072958 cctgtttggattgacttatttgagcttatctaatgacataag 16072999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 45541725 - 45541641
Alignment:
Q  299 gcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||| |||||||||| ||||||||| |||||  |||| ||||| ||||||||| | | ||| |||||  |||||||||||    
T  45541725 gcctgtttggattgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttat 45541641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 45590802 - 45590734
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    ||||||||||||||| | ||| |||||||| |  ||||||||||| | ||||||| |||||||||||||    
T  45590802 tgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 20669636 - 20669561
Alignment:
Q  402 ttatgaaaacaacctatagcttatatgaaa-caatttgacct-tatttttgttatagagatagcttatacacaagt 475  Q
    |||||||||| |  |||||||||||||||| |||||| || | ||||||||||||||| |||||||||||| ||||    
T  20669636 ttatgaaaacgaattatagcttatatgaaaacaatttaacttgtatttttgttatagaaatagcttatacataagt 20669561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 30657438 - 30657371
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctt 368  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||||| | ||| ||| ||| |||||||    
T  30657438 ctgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgtttggaagagctt 30657371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 1395801 - 1395723
Alignment:
Q  291 gacttgaggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctta 369  Q
    |||||| || || |||| |||||||||| ||||||||||| ||||| |||||||||   ||||||| || |||||||||    
T  1395801 gacttggggtctatttgtattgacttatttgagcttatcttatgacgtaagcacttgcgagactgtttgagagagctta 1395723  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 21872321 - 21872371
Alignment:
Q  399 agcttatgaaaacaacctatagcttatat-gaaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  21872321 agcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttatttt 21872371  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 52450156 - 52450202
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgataaacac 492  Q
    |||||||||||| || |||||| || |||||||||||||||||||||    
T  52450156 ttttgttatagaaattgcttatgcataagtacttgtatgataaacac 52450202  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 2923622 - 2923549
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagctta 382  Q
    ||||||||||  ||||||||||| ||||||||| ||||  |||||||| ||| ||| ||||| |||||| ||||    
T  2923622 attgacttattcgagcttatctattgacataagtacttgaaagactgtttggaagaacttatagaaacaactta 2923549  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 15304283 - 15304316
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatcta 331  Q
    ||||||||||||||||||||| ||||||||||||    
T  15304283 ggcctgtttgaattgacttatttgagcttatcta 15304316  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Original strand, 19679813 - 19679842
Alignment:
Q  402 ttatgaaaacaacctatagcttatatgaaa 431  Q
    ||||||||||||||||||||||||||||||    
T  19679813 ttatgaaaacaacctatagcttatatgaaa 19679842  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 50211886 - 50211805
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| ||| |||||| | |||||||||| | |||||||||||| ||||||||| || |||| |||||  ||||| |||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 41057058 - 41057026
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  41057058 agcttatgaaaacaacttatagcttatatgaaa 41057026  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 488
Target Start/End: Complemental strand, 48528542 - 48528502
Alignment:
Q  448 ttgttatagagatagcttatacacaagtacttgtatgataa 488  Q
    |||||||||| |||||||||||| |||||||| ||||||||    
T  48528542 ttgttatagaaatagcttatacataagtacttatatgataa 48528502  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 33067302 - 33067241
Alignment:
Q  309 attgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttat 370  Q
    |||||| |||||||  ||||||| |||||||||||||| ||||||||  |||||||||||||    
T  33067302 attgacctatgtgaatttatctactgacataagcacttgtaagactgattgggagagcttat 33067241  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 8010509 - 8010433
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaaca 377  Q
    ||||||| ||||||||||||||||||||||| || ||||| || || | |||| |||  ||||||||||| ||||||    
T  8010509 ctgtttggattgacttatgtgagcttatctattggcataaacatttgtgagacagtccaggagagcttatagaaaca 8010433  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 2112217 - 2112171
Alignment:
Q  402 ttatgaaaacaacctatagcttatatgaaacaatttgaccttatttt 448  Q
    ||||||||||||| ||||| |||||||||||||||| || |||||||    
T  2112217 ttatgaaaacaacttatagtttatatgaaacaatttaactttatttt 2112171  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 2457096 - 2457038
Alignment:
Q  298 ggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgt 356  Q
    |||||||||| |||| ||||| |||| |||||||  ||||||||||||| |||||||||    
T  2457096 ggcctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgt 2457038  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 4006734 - 4006684
Alignment:
Q  399 agcttatgaaaacaacctatagcttatat-gaaacaatttgaccttatttt 448  Q
    |||||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  4006734 agcttatgaaaacaacttatagcttatataaaaacaatttgactttatttt 4006684  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 8420115 - 8420197
Alignment:
Q  302 tgtttgaattgactt-atgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    |||||| |||||||| || |||||||||||| |||||||| ||||| | |||||||  | |||||||||| |||| |||||||    
T  8420115 tgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttat 8420197  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 32171297 - 32171383
Alignment:
Q  297 aggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagcttatcgaaacagcttat 383  Q
    ||||||||||| |||| ||||| | ||||||  || ||||||||||||||   ||||||| || ||||||||||  |||||||||||    
T  32171297 aggcctgtttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttat 32171383  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 7351589 - 7351634
Alignment:
Q  301 ctgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    |||||| ||||||||||| |||| ||||||| ||||||||||||||    
T  7351589 ctgtttaaattgacttatttgagtttatctactgacataagcactt 7351634  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 28130029 - 28130070
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgata 487  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  28130029 ttttgttatagaaatagcttaaacacaagtacttatatgata 28130070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 32386618 - 32386663
Alignment:
Q  404 atgaaaacaacctatagcttatatg-aaacaatttgaccttatttt 448  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||    
T  32386618 atgaaaacaacgtataccttatatgaaaacaatttgaccttatttt 32386663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 7485118 - 7485150
Alignment:
Q  399 agcttatgaaaacaacctatagcttatatgaaa 431  Q
    |||||||||||||||| ||||||||||||||||    
T  7485118 agcttatgaaaacaacttatagcttatatgaaa 7485150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 13908391 - 13908347
Alignment:
Q  302 tgtttgaattgacttatgtgagcttatctaatgacataagcactt 346  Q
    ||||||||||||||||| ||| |||||||| |||||||| |||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacactt 13908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 32205925 - 32205981
Alignment:
Q  295 tgaggcctgtttgaattgacttatgtgagcttatctaatgacataagcacttataag 351  Q
    ||||||||||||| |||||||||| ||| |||||||| |  |||||| |||||||||    
T  32205925 tgaggcctgtttggattgacttatttgaccttatctactagcataagtacttataag 32205981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 8616 - 8657
Alignment:
Q  446 ttttgttatagagatagcttatacacaagtacttgtatgata 487  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  8616 ttttgttatagaaatagcttaaacacaagtacttatatgata 8657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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