View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_30 (Length: 221)

Name: NF8319_low_30
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_30
NF8319_low_30
[»] scaffold1750 (1 HSPs)
scaffold1750 (19-135)||(836-953)
[»] chr4 (5 HSPs)
chr4 (20-81)||(35642328-35642389)
chr4 (20-86)||(35656580-35656646)
chr4 (20-84)||(35649902-35649966)
chr4 (20-84)||(35677982-35678046)
chr4 (129-158)||(11708332-11708361)
[»] chr1 (2 HSPs)
chr1 (129-192)||(40466-40529)
chr1 (133-202)||(45580761-45580830)
[»] chr5 (1 HSPs)
chr5 (131-193)||(36343159-36343221)
[»] chr8 (1 HSPs)
chr8 (129-189)||(31321382-31321443)


Alignment Details
Target: scaffold1750 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 953 - 836
Alignment:
Q  19 attctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatgtatgc-cgggggaaagcaaaatttaattatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  953 attctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatgtatgcaggggggaaagcaaaatttaattatat 854  T
Q  118 tagcttcttccaaagatt 135  Q
    ||||||||||||||||||    
T  853 tagcttcttccaaagatt 836  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 35642389 - 35642328
Alignment:
Q  20 ttctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcct 81  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  35642389 ttctgtcattgcccattctaagactgtgtaggtagtatcagtacctgcagcaaacatgtcct 35642328  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 35656646 - 35656580
Alignment:
Q  20 ttctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatg 86  Q
    ||||||||| ||||||||||||||||||||||| || || |||||||| ||||||||||||||||||    
T  35656646 ttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctacatg 35656580  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 35649966 - 35649902
Alignment:
Q  20 ttctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctaca 84  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||   ||||||||||||||    
T  35649966 ttctgtcattgtccattctaggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca 35649902  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 35678046 - 35677982
Alignment:
Q  20 ttctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctaca 84  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||   ||||||||||||||    
T  35678046 ttctgtcattgtccattctaggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca 35677982  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 11708332 - 11708361
Alignment:
Q  129 aaagattgattatttggaattgatagaatg 158  Q
    ||||||||||||||||||||||||||||||    
T  11708332 aaagattgattatttggaattgatagaatg 11708361  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 40529 - 40466
Alignment:
Q  129 aaagattgattatttggaattgatagaatggaaaaagttaattacaataagtataagatacact 192  Q
    |||||||||||||||||||| |||||||||  ||||||| |||||||| ||| |||||||||||    
T  40529 aaagattgattatttggaatagatagaatgagaaaagttgattacaatgagtgtaagatacact 40466  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 45580761 - 45580830
Alignment:
Q  133 attgattatttggaattgatagaatggaaaaagttaattacaataagtataagatacactacatatagtg 202  Q
    |||||||||||| ||| |||||||||  ||||||| |||||||  |||||| ||||||||  ||||||||    
T  45580761 attgattatttgaaatcgatagaatgagaaaagttgattacaacgagtataggatacactttatatagtg 45580830  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 36343221 - 36343159
Alignment:
Q  131 agattgattatttggaattgatagaatggaaaaagttaattacaataagtataagatacacta 193  Q
    ||||| ||||||||||||||||||||||  ||||||| |||||| |  || ||||||||||||    
T  36343221 agatttattatttggaattgatagaatgagaaaagttgattacacttggtgtaagatacacta 36343159  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 31321443 - 31321382
Alignment:
Q  129 aaagattgattatttggaattgatagaatggaa-aaagttaattacaataagtataagatac 189  Q
    |||||||||||||||| |||||| ||||  ||  ||| ||||||||||||||||||||||||    
T  31321443 aaagattgattatttgaaattgacagaaatgactaaaattaattacaataagtataagatac 31321382  T

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