View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8319_low_32 (Length: 213)
Name: NF8319_low_32
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 3367825 - 3367753
Alignment:
| Q |
23 |
tttgatgttcttgagatgaannnnnnnaatgttcttgagatgaaaacgataactgatcgtaagaataaagatg |
95 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3367825 |
tttgatgttcttgagatgaatttttttaatattcttgagatgaaaacgataactgatcgtaagaataaagatg |
3367753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 34601645 - 34601689
Alignment:
| Q |
51 |
atgttcttgagatgaaaacgataactgatcgtaagaataaagatg |
95 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
34601645 |
atgtttttgagatgaaaataataactaatcgtaagaataaagatg |
34601689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 16863495 - 16863453
Alignment:
| Q |
51 |
atgttcttgagatgaaaacgataactgatcgtaagaataaaga |
93 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
16863495 |
atgttcttgagatgaaaatggtaactgattgtaagaataaaga |
16863453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 37077692 - 37077648
Alignment:
| Q |
50 |
aatgttcttgagatgaaaacgataactgatcgtaagaataaagatg |
95 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
37077692 |
aatgttcttgagatgaaaatgataactgat-ttaagaataaagatg |
37077648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University