View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_4 (Length: 481)
Name: NF8319_low_4
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 19775761 - 19776212
Alignment:
| Q |
19 |
cgttcccttaacaaccaccacaccgcccttcgtttcttctcttgggcttctcatcaacgtaactattcccattctctcgattgctacgtttcgatcatta |
118 |
Q |
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| T |
19775761 |
cgttcccttaacaaccaccacaccgcccttcgtttcttctcttgggcttctcatcaacgtaactattcccattctctcgattgctacgtttcgatcatta |
19775860 |
T |
|
| Q |
119 |
accttctcctcatctcccnnnnnnnnnnnnnnnnnnnggcagccgctttaaacattttctccgaatttcaacgtaaccgtctcccgcttacaccacctgc |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19775861 |
accttctcctcatctcccccaccaccaccaccac---ggcagccgctttaaacattttctccgaatttcaacgtaaccgtctcccgcttacaccacctgc |
19775957 |
T |
|
| Q |
219 |
tgctaattccctcattaaaagcttcggtaacgccggtttggttaacgagcttttatttgtatggcgtggaatgaatgagcaaaacattcaaccaagtctt |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19775958 |
tgctaattccctcattaaaagcttcggtaacgctggtttggttaacgagcttttatttgtatggcgtggaatgaatgagcaaaacattcaaccaagtctt |
19776057 |
T |
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| Q |
319 |
tttacttataattcgcttttgaatggacttgttggttcgtgttttatcgaatcagcagagcgtgtttttgatgcgatgaaggaaggtagaacaaagcctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19776058 |
tttacttataattcgcttttgaatggacttgttggttcgtgttttatcgaatcagcagagcgtgtttttgatgcgatgaaggaaggtagaacaaagcctg |
19776157 |
T |
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| Q |
419 |
atgtggttacttacaatactatgatcaaagggtattgtaaagcggggaaaacacg |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19776158 |
atgtggttacttacaatactatgatcaaagggtattgtaaagcggggaaaacacg |
19776212 |
T |
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