View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_7 (Length: 462)

Name: NF8319_low_7
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_7
NF8319_low_7
[»] chr4 (45 HSPs)
chr4 (6-445)||(23016093-23016529)
chr4 (180-281)||(53737829-53737930)
chr4 (175-281)||(49532286-49532391)
chr4 (173-268)||(30978696-30978791)
chr4 (177-281)||(8297838-8297942)
chr4 (175-301)||(41370183-41370309)
chr4 (180-281)||(31690353-31690453)
chr4 (178-281)||(2063444-2063546)
chr4 (205-296)||(19597170-19597261)
chr4 (197-279)||(39274948-39275030)
chr4 (187-297)||(53261535-53261645)
chr4 (177-338)||(32055314-32055479)
chr4 (177-301)||(5047171-5047295)
chr4 (178-270)||(28695734-28695826)
chr4 (205-301)||(46088531-46088627)
chr4 (181-297)||(48097923-48098039)
chr4 (200-276)||(53919858-53919934)
chr4 (225-301)||(54974734-54974809)
chr4 (178-281)||(44646560-44646663)
chr4 (178-281)||(45900184-45900287)
chr4 (177-301)||(42956986-42957111)
chr4 (206-274)||(2818355-2818423)
chr4 (173-297)||(31072489-31072613)
chr4 (224-272)||(35605295-35605342)
chr4 (178-254)||(38945082-38945158)
chr4 (178-281)||(49446628-49446732)
chr4 (205-276)||(37179686-37179757)
chr4 (222-277)||(39279204-39279259)
chr4 (205-303)||(12618707-12618805)
chr4 (223-281)||(23133083-23133141)
chr4 (179-281)||(50086443-50086544)
chr4 (199-281)||(50341902-50341984)
chr4 (177-307)||(51291053-51291183)
chr4 (227-301)||(54495498-54495572)
chr4 (168-281)||(6316841-6316954)
chr4 (256-313)||(25042737-25042794)
chr4 (228-301)||(30161362-30161435)
chr4 (214-283)||(31871088-31871157)
chr4 (176-281)||(51834880-51834985)
chr4 (180-244)||(21240639-21240703)
chr4 (180-272)||(21241098-21241189)
chr4 (205-281)||(24546743-24546819)
chr4 (205-301)||(25115278-25115374)
chr4 (227-291)||(33266845-33266909)
chr4 (177-269)||(52650737-52650829)
[»] chr1 (37 HSPs)
chr1 (175-269)||(34861259-34861353)
chr1 (177-264)||(39912262-39912349)
chr1 (201-283)||(6983023-6983105)
chr1 (178-276)||(34445637-34445735)
chr1 (177-297)||(3047834-3047954)
chr1 (177-297)||(16113886-16114006)
chr1 (178-283)||(39150550-39150655)
chr1 (177-289)||(43492155-43492268)
chr1 (178-307)||(48947172-48947301)
chr1 (177-300)||(4521024-4521145)
chr1 (175-271)||(35259091-35259187)
chr1 (201-292)||(4039626-4039717)
chr1 (173-236)||(18114514-18114577)
chr1 (202-300)||(36321641-36321739)
chr1 (178-266)||(40570657-40570746)
chr1 (177-281)||(2864110-2864213)
chr1 (178-294)||(31042969-31043085)
chr1 (177-265)||(45584506-45584594)
chr1 (217-301)||(46895939-46896023)
chr1 (175-281)||(3506945-3507052)
chr1 (222-297)||(44442262-44442337)
chr1 (181-307)||(39973863-39973989)
chr1 (203-281)||(40203113-40203191)
chr1 (202-283)||(1048703-1048783)
chr1 (226-291)||(2351399-2351464)
chr1 (176-300)||(4771988-4772112)
chr1 (224-307)||(22177256-22177340)
chr1 (175-283)||(33744168-33744276)
chr1 (177-281)||(40377009-40377113)
chr1 (175-283)||(48022386-48022494)
chr1 (224-279)||(45359284-45359339)
chr1 (203-301)||(3755943-3756041)
chr1 (227-301)||(25670786-25670860)
chr1 (200-281)||(38491211-38491292)
chr1 (218-283)||(41649894-41649959)
chr1 (180-283)||(17112673-17112779)
chr1 (177-281)||(39156228-39156332)
[»] chr2 (33 HSPs)
chr2 (217-345)||(9153443-9153573)
chr2 (178-283)||(13538363-13538469)
chr2 (176-281)||(32859751-32859856)
chr2 (173-281)||(3882579-3882687)
chr2 (177-301)||(2825971-2826095)
chr2 (204-281)||(8964386-8964463)
chr2 (203-283)||(6761759-6761839)
chr2 (200-311)||(24389628-24389739)
chr2 (205-307)||(6334681-6334783)
chr2 (227-301)||(44330644-44330718)
chr2 (227-301)||(44365418-44365492)
chr2 (225-301)||(8333589-8333665)
chr2 (182-300)||(15120062-15120181)
chr2 (206-301)||(18375058-18375153)
chr2 (173-281)||(18684323-18684433)
chr2 (182-281)||(34546303-34546402)
chr2 (202-297)||(44195499-44195594)
chr2 (177-279)||(1334921-1335023)
chr2 (222-304)||(19495216-19495297)
chr2 (246-307)||(16944801-16944862)
chr2 (246-307)||(17015466-17015527)
chr2 (223-278)||(33962981-33963036)
chr2 (174-276)||(18053057-18053159)
chr2 (220-301)||(24791999-24792081)
chr2 (227-301)||(27501750-27501824)
chr2 (178-283)||(41543945-41544051)
chr2 (205-274)||(14663222-14663291)
chr2 (188-297)||(20128308-20128417)
chr2 (204-301)||(24765329-24765426)
chr2 (177-301)||(24762729-24762853)
chr2 (221-265)||(25093865-25093909)
chr2 (205-269)||(33275940-33276004)
chr2 (177-237)||(43745591-43745651)
[»] chr3 (28 HSPs)
chr3 (177-297)||(53040436-53040556)
chr3 (177-281)||(54290812-54290916)
chr3 (187-301)||(45529134-45529248)
chr3 (200-281)||(30463992-30464073)
chr3 (177-272)||(3027029-3027124)
chr3 (178-295)||(37708405-37708522)
chr3 (204-301)||(52299036-52299133)
chr3 (177-297)||(25317772-25317892)
chr3 (176-272)||(29611986-29612082)
chr3 (180-338)||(4305120-4305278)
chr3 (173-244)||(17517516-17517587)
chr3 (178-281)||(23554709-23554811)
chr3 (177-272)||(48551007-48551102)
chr3 (201-282)||(41571601-41571683)
chr3 (226-300)||(46711930-46712004)
chr3 (181-274)||(24313522-24313615)
chr3 (239-283)||(46547813-46547857)
chr3 (205-264)||(2831542-2831601)
chr3 (184-270)||(38009007-38009094)
chr3 (231-282)||(40546348-40546399)
chr3 (222-297)||(51039767-51039842)
chr3 (207-269)||(49197087-49197149)
chr3 (199-301)||(52638173-52638275)
chr3 (208-281)||(13804883-13804956)
chr3 (201-281)||(18399194-18399275)
chr3 (180-237)||(52308986-52309043)
chr3 (179-282)||(25461440-25461543)
chr3 (233-281)||(43803992-43804040)
[»] chr8 (34 HSPs)
chr8 (181-307)||(1876491-1876617)
chr8 (175-281)||(31264962-31265068)
chr8 (177-281)||(20279590-20279694)
chr8 (177-281)||(21066217-21066321)
chr8 (178-281)||(39691149-39691252)
chr8 (176-281)||(42636401-42636506)
chr8 (195-278)||(41106036-41106119)
chr8 (204-301)||(34336488-34336585)
chr8 (180-281)||(37564367-37564468)
chr8 (197-281)||(37813437-37813522)
chr8 (173-281)||(27734375-27734483)
chr8 (177-307)||(18808775-18808905)
chr8 (180-281)||(25382592-25382694)
chr8 (177-281)||(28207591-28207695)
chr8 (200-297)||(12002257-12002354)
chr8 (180-301)||(28460007-28460128)
chr8 (180-300)||(7513311-7513431)
chr8 (205-273)||(25163065-25163133)
chr8 (175-283)||(25279894-25280001)
chr8 (202-297)||(29487078-29487174)
chr8 (180-353)||(41385235-41385412)
chr8 (177-301)||(44254142-44254266)
chr8 (206-269)||(42022640-42022703)
chr8 (180-274)||(9460428-9460522)
chr8 (205-283)||(42760180-42760258)
chr8 (222-307)||(11533244-11533329)
chr8 (204-269)||(15352117-15352182)
chr8 (168-301)||(24733130-24733263)
chr8 (179-272)||(31844262-31844354)
chr8 (187-268)||(36924012-36924093)
chr8 (177-281)||(39093051-39093156)
chr8 (215-283)||(12229994-12230061)
chr8 (216-260)||(17599234-17599278)
chr8 (178-282)||(36348523-36348627)
[»] chr5 (30 HSPs)
chr5 (173-281)||(25437909-25438018)
chr5 (177-297)||(41583510-41583630)
chr5 (199-297)||(16161408-16161506)
chr5 (200-282)||(27016661-27016743)
chr5 (179-281)||(30501175-30501277)
chr5 (179-281)||(30541518-30541620)
chr5 (206-282)||(967098-967174)
chr5 (177-281)||(23023600-23023704)
chr5 (178-281)||(31672379-31672483)
chr5 (179-268)||(17098234-17098323)
chr5 (177-282)||(34032124-34032229)
chr5 (205-301)||(591239-591335)
chr5 (177-281)||(30104771-30104875)
chr5 (214-281)||(26663639-26663706)
chr5 (214-281)||(26935234-26935301)
chr5 (196-339)||(5758548-5758695)
chr5 (180-281)||(779056-779156)
chr5 (188-301)||(2827579-2827692)
chr5 (180-281)||(3263717-3263818)
chr5 (204-301)||(42265430-42265527)
chr5 (180-276)||(14042433-14042529)
chr5 (217-301)||(23129350-23129433)
chr5 (197-276)||(32017458-32017537)
chr5 (178-272)||(10410418-10410512)
chr5 (203-301)||(27146865-27146963)
chr5 (175-265)||(27650859-27650949)
chr5 (227-301)||(40872257-40872331)
chr5 (176-269)||(7719170-7719263)
chr5 (177-269)||(27310260-27310353)
chr5 (231-279)||(3758221-3758269)
[»] chr7 (37 HSPs)
chr7 (178-274)||(27123242-27123338)
chr7 (197-297)||(34681679-34681779)
chr7 (202-297)||(35567106-35567201)
chr7 (205-282)||(33887886-33887963)
chr7 (177-297)||(34299762-34299882)
chr7 (178-281)||(28770445-28770548)
chr7 (178-272)||(36973304-36973399)
chr7 (187-281)||(10031956-10032050)
chr7 (187-297)||(33922760-33922868)
chr7 (173-281)||(17157804-17157913)
chr7 (197-281)||(1360523-1360607)
chr7 (177-301)||(5248648-5248772)
chr7 (177-241)||(17302858-17302922)
chr7 (201-269)||(27338253-27338321)
chr7 (179-283)||(35599835-35599939)
chr7 (178-282)||(44719430-44719534)
chr7 (177-281)||(47507577-47507681)
chr7 (204-283)||(8920736-8920815)
chr7 (202-281)||(18926319-18926398)
chr7 (202-301)||(26402797-26402896)
chr7 (230-301)||(26804034-26804105)
chr7 (198-281)||(31902784-31902867)
chr7 (205-272)||(44452086-44452153)
chr7 (182-297)||(46726109-46726223)
chr7 (202-301)||(47405245-47405344)
chr7 (222-272)||(19620004-19620054)
chr7 (179-281)||(36061537-36061638)
chr7 (205-274)||(6387995-6388064)
chr7 (202-282)||(7596180-7596261)
chr7 (177-226)||(27766776-27766825)
chr7 (177-281)||(36827555-36827657)
chr7 (222-275)||(37138662-37138715)
chr7 (239-307)||(8327838-8327906)
chr7 (177-237)||(14651463-14651523)
chr7 (227-275)||(38452188-38452236)
chr7 (234-282)||(42890297-42890345)
chr7 (204-272)||(43492246-43492314)
[»] chr6 (12 HSPs)
chr6 (205-334)||(25028676-25028809)
chr6 (178-300)||(30509284-30509406)
chr6 (227-301)||(22020536-22020610)
chr6 (227-301)||(22055033-22055107)
chr6 (175-301)||(29407968-29408094)
chr6 (179-244)||(34185098-34185163)
chr6 (201-297)||(6586436-6586532)
chr6 (203-274)||(11675630-11675704)
chr6 (202-301)||(24797405-24797504)
chr6 (199-297)||(31702759-31702857)
chr6 (214-281)||(7421676-7421743)
chr6 (201-281)||(12132518-12132598)
[»] scaffold0011 (1 HSPs)
scaffold0011 (208-297)||(219188-219277)
[»] scaffold0010 (1 HSPs)
scaffold0010 (202-281)||(26693-26772)
[»] scaffold0018 (1 HSPs)
scaffold0018 (227-301)||(48796-48870)
[»] scaffold0633 (1 HSPs)
scaffold0633 (218-283)||(5037-5102)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 445
Target Start/End: Complemental strand, 23016529 - 23016093
Alignment:
Q  6 tatattattctgaatttagaactaggaaatcaaactggaattcacgatgttgtacttactgtgatctatgcttttcacagacctggctccttgtttctat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23016529 tatattattctgaatttagaactaggaaatcaaactggaattcacgatgttgtacttactgtgatctatgcttttcacagacctggctccttgtttctat 23016430  T
Q  106 tgtgatgtgacttatctgtgcaatttcatttttgagttggaaatatgggatgaaggaacataattacttttagggtcttgctaacgagcgcccccggggc 205  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23016429 tgtgatgtgacttatctgtgcaatttcatttttgagt---aaatatgggatgaaggaacataattacttttagggtcttgctaacgagcgcccccggggc 23016333  T
Q  206 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23016332 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacat 23016233  T
Q  306 ttcccttaaagagtgccttgggggcactcgttagcttttcactttcttttaaatacacagaaatataggctttagtgatgagtcctgagtatataaggag 405  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23016232 ttcccttaaagagtgccttgggggcactcgttagcatttcactttcttttaaatacacagaaatataggctttagtgatgagtcctgagtatataaggag 23016133  T
Q  406 ataaactaacctcttggttattggcgtgaaaatctatatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23016132 ataaactaacctcttggttattggcgtgaaaatctatatg 23016093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 53737930 - 53737829
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||||||||||| |||||| ||||||||||| ||| ||||||| |||||||||||| |||||| || ||||| ||||| |||||||||||||||||||    
T  53737930 gtcttgctaacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaata 53737831  T
Q  280 ca 281  Q
    ||    
T  53737830 ca 53737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 49532391 - 49532286
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| ||||||| ||||||||| |||||| | |||||||||||||||||||||||| |||| | || ||||| | ||||||||||||||||||    
T  49532391 ttagggtcttgttaacgagtgcccccgggacactctgtaagcattccaaattaagaaattattctttata-aaatcaaataattcaatttccaatgcatt 49532293  T
Q  275 gaataca 281  Q
     ||||||    
T  49532292 aaataca 49532286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 30978791 - 30978696
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaa 268  Q
    |||| |||||||| ||| ||| ||||| |||||||||||| |||||||||||||||||||| |||  ||||| |||||||| | ||||||||||||    
T  30978791 tttttgggtcttgttaaggagtgcccctggggcactctttaagcattccaaattaagaaatgatttattaaaaaagtcaaatagttcaatttccaa 30978696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 8297838 - 8297942
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| ||||||| || ||||||| ||| || | |||||   || |||||||||||||||| |    
T  8297838 agggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattca 8297937  T
Q  277 ataca 281  Q
    |||||    
T  8297938 ataca 8297942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 41370309 - 41370183
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| ||||||| |   |||| |||||| || |||| |||||||||||||||||||  | ||| |||| ||| |||||||||| |||||||||    
T  41370309 ttagggtcttgttaacgagtgtttccggagcactcattaagcaatccaaattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcatt 41370210  T
Q  275 gaatacatagacttttataaaaactta 301  Q
    || |||| | | ||| |||||||||||    
T  41370209 gattacacaaattttcataaaaactta 41370183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 31690353 - 31690453
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||||||||||||| |||||||| |  |||||||||| |  |||||||||||||| |||||||   || |||||| ||||||||||||||    
T  31690353 gtcttgttaacgagcgcccccgggacactctttaacgattccaaatttattaattattatttaaa-aagtcaactgttgcaattttcaatgcattgaata 31690451  T
Q  280 ca 281  Q
    ||    
T  31690452 ca 31690453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 2063444 - 2063546
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| || |||||  |||||||| ||||| | |||||| ||| ||||| |||||| |||||||||| |||||||||||||| ||| ||    
T  2063444 gggtcttgttaacgagtgctcccgga-cactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaa 2063542  T
Q  278 taca 281  Q
    ||||    
T  2063543 taca 2063546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 19597261 - 19597170
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaa 296  Q
    |||| ||| ||||||| | |||| ||||||||| |||||| | |||||| | ||||||||| ||||||||||||||||| | ||||||||||    
T  19597261 cactttttaagcattctacattaggaaattattctttaaaaatgtcaaatagttcaatttctaatgcattgaatacataaatttttataaaa 19597170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 39274948 - 39275030
Alignment:
Q  197 ccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||||||||| ||| ||||||| ||| |||  ||||||| ||| || || ||||| |||||||||||||||||||||||||    
T  39274948 ccccggggcactatttaagcattcaaaagtaaacaattatttttttaaaaaatcaaatatttcaatttccaatgcattgaata 39275030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 53261535 - 53261645
Alignment:
Q  187 taacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagac 286  Q
    ||||||| |||||| || |||||||| ||||| | |||||||| ||||||| |||||| |  | |||  ||||||||||||||||| ||| |||| | ||    
T  53261535 taacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgcagtgattacacaaac 53261634  T
Q  287 ttttataaaaa 297  Q
    |||||||||||    
T  53261635 ttttataaaaa 53261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 32055479 - 32055314
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaaca-tttcaatttccaatgcattg 275  Q
    ||||||||| | ||||| ||||||||| |||||||| ||||| | |||  ||| ||||||| |||| | |||||||||| |||| |||||||||||||||    
T  32055479 agggtcttgttgacgagtgcccccggg-cactctttaagcatacaaaaacaagcaattattctttagaaaagtcaaacattttcgatttccaatgcattg 32055381  T
Q  276 aatacatagacttttataaaaacttaacattt----cccttaaagagtgccttgggggcactcgtta 338  Q
    | |||||  | ||||||||| ||||   ||||     |||||||||||| | |||||||||||||||    
T  32055380 attacatgtatttttataaatacttgctatttatagtccttaaagagtgacatgggggcactcgtta 32055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 301
Target Start/End: Original strand, 5047171 - 5047295
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||| ||| ||||||| ||||   |||||||| || || ||| | ||| |||||||||||  ||| | |||||||| ||||||||||||||||||||||    
T  5047171 agggttttgttaacgagtgccctaagggcactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaatgcattga 5047270  T
Q  277 atacatagacttttataaaaactta 301  Q
     | |||| ||||| | |||||||||    
T  5047271 tttcataaactttaaaaaaaactta 5047295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 28695734 - 28695826
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatg 270  Q
    |||||||| ||||||| ||||   ||||||||||| || ||| | ||| ||||||||||| |||||| |||||||| | ||||||||||||||    
T  28695734 gggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatg 28695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 46088627 - 46088531
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||| || ||||| ||| |||||||||||  ||||| || ||||| | |||||||||||||||||||| | |||| ||||| | |||||||||    
T  46088627 cactctttaagaattcctaataaagaaattattccttaaaaaaatcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaactta 46088531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 48097923 - 48098039
Alignment:
Q  181 tcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatac 280  Q
    ||||| ||||||| | | |||| ||||| ||| || |||| |||||||||||||||| |||||| |||| ||| | ||||||||||||| |||| |||||    
T  48097923 tcttgttaacgagtgtctccggagcactttttaagtattctaaattaagaaattattctttaaaaaagttaaatagttcaatttccaatacattaaatac 48098022  T
Q  281 atagacttttataaaaa 297  Q
    | |   |||||||||||    
T  48098023 acatgtttttataaaaa 48098039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 53919858 - 53919934
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||||||| |||||| ||||  || |||||||| | |||| |||||||| |||||||||||| |||||||||    
T  53919858 cggggcactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattga 53919934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 54974809 - 54974734
Alignment:
Q  225 ttaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||||||||||||| || ||||| | ||||| || |||||||||||||| ||| | |||||||||||||||    
T  54974809 ttaagaaattattatttaaa-aactcaaatacttcaactttcaatgcattgaatatataaatttttataaaaactta 54974734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 44646663 - 44646560
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| |||||||||||| ||||| || ||| ||||  |||||| |||| | |||  |||||||| ||||| |||||| |||||||||     
T  44646663 gggtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgat 44646564  T
Q  278 taca 281  Q
    ||||    
T  44646563 taca 44646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 45900287 - 45900184
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| ||||||| |||||||||| ||||| | ||||| || ||||||| ||| |  |||||||  ||  |||||||||||||||| ||    
T  45900287 gggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaa 45900188  T
Q  278 taca 281  Q
    ||||    
T  45900187 taca 45900184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 42957111 - 42956986
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgcattg 275  Q
    ||||||||| ||||||| | | || || |||||||| | ||||| ||| |||| | ||||||||| ||| || ||||| ||||||||||||||||||||     
T  42957111 agggtcttgttaacgagagtcaccaggacactctttaaacattctaaaataagcagttattattttaaaaaaatcaaatatttcaatttccaatgcatta 42957012  T
Q  276 aatacatagacttttataaaaactta 301  Q
    | |||| | | ||||||||| |||||    
T  42957011 attacacacatttttataaatactta 42956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 2818355 - 2818423
Alignment:
Q  206 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||| ||||||  |||||||||||||||| ||| || | |||||| | ||||||||||||||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatt 2818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 31072613 - 31072489
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||| |||||||| ||||||| ||||||||| |||||||| || ||   ||||| ||||| |||| ||| || ||||||||  || ||| |||| |||||    
T  31072613 ttttcgggtcttgttaacgagtgcccccgggccactctttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgca 31072514  T
Q  273 ttgaatacatagacttttataaaaa 297  Q
    |||| |||| ||  |||||||||||    
T  31072513 ttgattacacagttttttataaaaa 31072489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 35605295 - 35605342
Alignment:
Q  224 attaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  35605295 attaagaaattatt-tttaaaaaagtcaaacagttcaatttccaatgca 35605342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 38945158 - 38945082
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaac 254  Q
    |||||||| ||||||| ||||||| |||||||||| |||  ||||||||||| ||||||| | | || |||||||||    
T  38945158 gggtcttgttaacgagtgcccccgcggcactctttaagctatccaaattaagcaattattctcttaaaaagtcaaac 38945082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 49446732 - 49446628
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattat-ttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||| |||| || |||| ||||||||||||| || ||||||||  ||||| ||||| | | ||| |||||||| ||||| |||||| |||||||||    
T  49446732 gggtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattga 49446633  T
Q  277 ataca 281  Q
     ||||    
T  49446632 ttaca 49446628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 37179686 - 37179757
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||| ||||| |||||  ||| ||||||| |||| | |||||||||||||| |||||||||| |||||    
T  37179686 cactctttaagcataccaaaacaagtaattattttttagaaaagtcaaacatttcgatttccaatgtattga 37179757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 39279204 - 39279259
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    ||||||||||||||||  ||||| ||||||||   |||||||||||||||||||||    
T  39279204 aaattaagaaattattccttaaaaaagtcaaattcttcaatttccaatgcattgaa 39279259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 12618805 - 12618707
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaac 303  Q
    |||||||| ||||||||||||| |||||||||| ||| || ||||||||  ||  || || ||||||||||| || | | | ||| |||||||||||||    
T  12618805 cactctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaacttaac 12618707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 23133141 - 23133083
Alignment:
Q  223 aattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||||||||  ||||| ||||  |||| |||||||||| ||||||||||||||    
T  23133141 aattaagaaattattccttaaaaaagtttaacacttcaatttccgatgcattgaataca 23133083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 50086544 - 50086443
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||| ||||||| ||||| |||  ||||||| | ||||||||| |||  ||||||| |||||| || ||||| ||||  |||| |||||||||||||    
T  50086544 ggtcttgttaacgagtgcccc-gggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaat 50086446  T
Q  279 aca 281  Q
    |||    
T  50086445 aca 50086443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 50341984 - 50341902
Alignment:
Q  199 ccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||| | | ||||||||||||| || ||||||| ||| || |||||||  ||| |||||||||| ||||| ||||||    
T  50341984 ccggggcactttgtaagcattccaaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaataca 50341902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 51291053 - 51291183
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||  |||| || |||||||||| | |||||| ||| ||||| ||||| ||||||  | | ||| | |||||||||||||||| | |    
T  51291053 agggtcttgttaacgaatgccctcgaggcactctttaaacattcctaatgaagaagttattctttaaaataattaaagacttcaatttccaatgcaataa 51291152  T
Q  277 atacatagacttttataaaaacttaacattt 307  Q
    || || | ||||| |||||| |||| |||||    
T  51291153 atgcacaaactttcataaaatcttaccattt 51291183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 54495498 - 54495572
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| |||||| |||| ||| | | |||||| ||||||||||| | |||| ||||| |||||||||||    
T  54495498 aagaaattattttttaaaaaagttaaaaactccaattttcaatgcattgatttcataaactttgataaaaactta 54495572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 6316954 - 6316841
Alignment:
Q  168 attacttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttcca 267  Q
    |||| ||| ||||||||| ||||||| ||| |||||||||||||| |  ||| ||||  ||||||| ||| | |||| ||| |||| ||||  |||| ||    
T  6316954 attattttaagggtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttca 6316855  T
Q  268 atgcattgaataca 281  Q
    ||||||||| ||||    
T  6316854 atgcattgattaca 6316841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 25042794 - 25042737
Alignment:
Q  256 tttcaatttccaatgcattgaatacatagacttttataaaaacttaacatttccctta 313  Q
    |||||||||| |||| | ||| |||| | ||||||||||||| |||||||||||||||    
T  25042794 tttcaatttctaatgtactgattacacaaacttttataaaaagttaacatttccctta 25042737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 30161435 - 30161362
Alignment:
Q  228 agaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||| |||||| |||||||| | | |||||| ||||||||||| | |||| ||||| | |||||||||    
T  30161435 agaaattattctttaaaaaagtcaaaaactccaatttacaatgcattgatttcataaactttaacaaaaactta 30161362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 31871157 - 31871088
Alignment:
Q  214 agcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||| ||||  ||||||||||| | |||| |||| ||| |||||||||||| ||||||||| ||||||    
T  31871157 agcatttcaaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattacata 31871088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 51834880 - 51834985
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    |||||||||| ||| |||   ||||||| |||||||| ||||| | ||||| || ||||||| ||| || |||||||  |||  |||||||||||||||     
T  51834880 tagggtcttgttaatgagtttccccgggacactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcatta 51834979  T
Q  276 aataca 281  Q
    ||||||    
T  51834980 aataca 51834985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 21240639 - 21240703
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaa 244  Q
    |||||| ||||||  || ||||||||| ||||| | ||| | |||||||||||||||||||||||    
T  21240639 gtcttgttaacgaatgctcccggggcattctttaaacatgctaaattaagaaattattatttaaa 21240703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 21241098 - 21241189
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||| ||||||||||||| ||| |||||||| | |||   |||||||||||| ||| |||||| |  |||||  |||||||||||||||||    
T  21241098 gtcttgttaacgagcgccccaggg-cactctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaatttccaatgca 21241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 24546819 - 24546743
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||| |||||   |||||| ||||||||| |||||| || |||| || |||||||||||||| ||| ||||||    
T  24546819 cactctttaagcatgttaaattaggaaattattctttaaaaaattcaagcagttcaatttccaatgtattaaataca 24546743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 25115374 - 25115278
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||| || || | ||||| || ||||||||||| || |||| ||  ||| |||||||||||||| |||||||| |   |||||||||||||||    
T  25115374 cactctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaactttttataaaaactta 25115278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 33266909 - 33266845
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagactttta 291  Q
    ||||||||||| |||||| |||||||| | || ||||||||||| ||||| | |||| |||||||    
T  33266909 aagaaattattctttaaaaaagtcaaaaactttaatttccaatggattgatttcataaactttta 33266845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 52650829 - 52650737
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    ||||||||| ||||||| ||| ||||  |||||||| | ||| | |||||||||||||||| |||| | | ||||||  ||||||||| ||||    
T  52650829 agggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaat 52650737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 34861353 - 34861259
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    ||||||||||| ||||||| ||||| |||||||||||| ||||||| |||||||| ||||||| |||||| | ||||||||||||||||||||||    
T  34861353 ttagggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttccaat 34861259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 39912349 - 39912262
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaattt 264  Q
    ||||||||| ||||||| ||||||||| |||||||| ||||| | |||||| ||| |||||||||||| |||||||||| ||||||||    
T  39912349 agggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaggaagttattatttaaaaaagtcaaacaattcaattt 39912262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 6983105 - 6983023
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||||||||| || |||||||||||||||||||||  |||||  ||||||| |||||||||| |||||||||| |||||||    
T  6983105 ggggcactctttaagtattccaaattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattggatacata 6983023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 34445637 - 34445735
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||| ||||||| |||||||| ||||||||| || ||||||||  ||||||||| | | |||| |||||||| ||||| ||||||||||||||||    
T  34445637 gggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattga 34445735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 3047834 - 3047954
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||| | |||||||| |||| || |||||| | ||||||  |||| ||||||||||||||||    
T  3047834 agggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattga 3047933  T
Q  277 atacatagacttttataaaaa 297  Q
     || | | ||||| |||||||    
T  3047934 ttaaacaaactttcataaaaa 3047954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 16113886 - 16114006
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| ||| |||||||||||||| ||||| | | |||||| ||||||| ||| || | ||||||  ||||||||||||||||| |||    
T  16113886 agggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgcactga 16113985  T
Q  277 atacatagacttttataaaaa 297  Q
     |||| | ||||| |||||||    
T  16113986 ttacacaaactttcataaaaa 16114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 39150550 - 39150655
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| |||||||||||||||||| ||||| | ||||| || ||||||| ||  || |||||||  ||| |||||| ||||||||| ||    
T  39150550 gggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaa 39150649  T
Q  278 tacata 283  Q
    ||||||    
T  39150650 tacata 39150655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 43492268 - 43492155
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgcattg 275  Q
    ||||||||| ||||||| ||||   ||||||||||| || ||||| ||| ||||||||||| ||| ||| |||||||| | |||||||||||||||||||    
T  43492268 agggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaaaagtcaaaaacttcaatttccaatgcattg 43492169  T
Q  276 aatacatagacttt 289  Q
    | | |||| |||||    
T  43492168 atttcataaacttt 43492155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 307
Target Start/End: Original strand, 48947172 - 48947301
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||| ||| ||||||| ||||| |||||| ||||| ||||| | |||||||| ||||||| |||||| | ||||||  ||||||||||||||||| |||     
T  48947172 gggttttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgat 48947271  T
Q  278 tacatagacttttataaaaacttaacattt 307  Q
    |||| | | ||| ||||||| ||| |||||    
T  48947272 tacacaaattttcataaaaagttaccattt 48947301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 4521145 - 4521024
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| ||| |  ||||||||||| ||||| | |||  |||  |||||| |||||| |||| ||||||||||||||||||||||||||    
T  4521145 agggtcttgttaacgagtgcctc--gggcactctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattga 4521048  T
Q  277 atacatagacttttataaaaactt 300  Q
     |||||  | ||||||||| ||||    
T  4521047 ttacatgtatttttataaatactt 4521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 35259187 - 35259091
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgc 271  Q
    ||||| ||||| ||||||| |||| ||||||||||||| || || | |||||||||||||||| |||||| | || |||  ||||||||||||||||    
T  35259187 ttaggatcttgttaacgagtgccctcggggcactctttaagtatgctaaattaagaaattattttttaaaaatgtaaaagttttcaatttccaatgc 35259091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 4039717 - 4039626
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttat 292  Q
    |||||||||||| || ||||||||  || |||||||| | |||| |||||||| ||||| |||||||||||||||| |||||| | ||||||    
T  4039717 ggggcactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttat 4039626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 18114577 - 18114514
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattat 236  Q
    ||||| ||||||| ||||||| |||| ||||||||||||| |||||||||| ||||||||||||    
T  18114577 ttttaaggtcttgttaacgagtgcccgcggggcactctttaagcattccaatttaagaaattat 18114514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 36321739 - 36321641
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactt 300  Q
    ||||||||||| ||||| |||||  ||| ||||||| |||| | |||| ||||||||| |||||||||||||||| |||||  | ||||||||| ||||    
T  36321739 gggcactctttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatgcattgattacatgtatttttataaatactt 36321641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 40570657 - 40570746
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagc-attccaaattaagaaattattatttaaagaagtcaaacatttcaatttcc 266  Q
    |||||||| ||||||| |||||||||||||||||| ||| || | ||| | || ||||||| |||||| |||||||||||||| ||||||    
T  40570657 gggtcttgttaacgagtgcccccggggcactctttaagctatccaaaaattagcaattattctttaaaaaagtcaaacatttcgatttcc 40570746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 2864110 - 2864213
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| | ||||||| |||||||| | ||| ||| ||| || ||||||| |||||| |||||||  ||| |||||||||||||||| |    
T  2864110 agggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattattctttaaa-aagtcaactattacaatttccaatgcattca 2864208  T
Q  277 ataca 281  Q
    |||||    
T  2864209 ataca 2864213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 31042969 - 31043085
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||  | ||||||  || ||||| ||||||| |||||||| ||||||| |||||| | ||||||  ||||||||| |||||||||||     
T  31042969 gggtcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattgat 31043068  T
Q  278 tacatagacttttataa 294  Q
    |||| | ||||| ||||    
T  31043069 tacacaaactttcataa 31043085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 45584506 - 45584594
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttc 265  Q
    ||||||||| ||||||  |||||||||||||||||| || ||||||||  ||||||||||| | |||| |||| ||| |||| ||||||    
T  45584506 agggtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttc 45584594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 46895939 - 46896023
Alignment:
Q  217 attccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||| ||||||||||||||||  || || ||||| || |||||||||||| ||||||||||| |||| | || ||||||||||||    
T  46895939 attctaaattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaactta 46896023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 3506945 - 3507052
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattat-tatttaaagaagtcaaacatttcaatttccaatgcat 273  Q
    ||||||||| | ||||||| |||| ||||||||||||| ||||||| || | ||||||||||  | | ||| |||||||   ||||||||||||||||||    
T  3506945 ttagggtctcgttaacgagtgcccgcggggcactctttaagcattctaattcaagaaattatccactaaaaaaagtcaattgtttcaatttccaatgcat 3507044  T
Q  274 tgaataca 281  Q
    | ||||||    
T  3507045 tcaataca 3507052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 44442262 - 44442337
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    |||||| ||||||||| |||||| |||||||| |||||||||| |||| |||| |||||| | | |||||||||||    
T  44442262 aaattaggaaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaa 44442337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 39973863 - 39973989
Alignment:
Q  181 tcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatac 280  Q
    ||||| ||||||| | | |||||||||||||| ||||| | |||||||| ||||||| ||| || | || |||  ||||||||| ||||||||||| ||     
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattgattat 39973962  T
Q  281 atagacttttataaaaacttaacattt 307  Q
    | | ||||| ||||||| ||| |||||    
T  39973963 acaaactttcataaaaagttatcattt 39973989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 40203191 - 40203113
Alignment:
Q  203 ggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||| || ||| ||||  |||||||||||   |||| |||||||| |||||||||||||||||||||| ||||    
T  40203191 ggcactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattaca 40203113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 1048783 - 1048703
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    ||||||||||| ||||| ||||||||| |||||||| |||||| |||| ||| | |||||||| |||||| |||||| ||||    
T  1048783 gggcactctttaagcataccaaattaaaaaattattctttaaa-aagttaaatagttcaattttcaatgcgttgaatgcata 1048703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 2351399 - 2351464
Alignment:
Q  226 taagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagactttta 291  Q
    ||||||||||||   |||| ||||||||||||| ||||||| ||||||||| |||||| |||||||    
T  2351399 taagaaattatttcataaaaaagtcaaacattttaatttccgatgcattgattacataaactttta 2351464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 4771988 - 4772112
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    |||||| ||| ||||||| ||| |||||||||||||| ||||| |||||| ||| ||||||| ||| || ||||  || ||||| |||| ||||| |||     
T  4771988 tagggttttgttaacgagtgcctccggggcactctttaagcataccaaatgaagcaattatttttttaaaaagtagaatatttcgattttcaatgtatta 4772087  T
Q  276 aatacatagacttttataaaaactt 300  Q
    | |||| | | ||||||||| ||||    
T  4772088 attacacacatttttataaatactt 4772112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 22177340 - 22177256
Alignment:
Q  224 attaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca-tagacttttataaaaacttaacattt 307  Q
    |||||||||| |||  ||||| |||||||  | |||||||||||||||||||||||||  |   |||||||||||||||||||||    
T  22177340 attaagaaataatttcttaaaaaagtcaagtacttcaatttccaatgcattgaatacacaatttttttataaaaacttaacattt 22177256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 33744276 - 33744168
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| | | ||| |||||  | ||||||||| ||||||  ||| |||| ||||||| ||| || |||||||| ||||| |||| |||||||||    
T  33744276 ttagggtcttgtttaggagtgccccttgagcactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcatt 33744177  T
Q  275 gaatacata 283  Q
    || ||||||    
T  33744176 gattacata 33744168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 40377009 - 40377113
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| |||||  ||||||||||| || ||||||||  ||||||| ||| | |||| |||||||| ||||  ||| ||||| ||||||    
T  40377009 agggtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattga 40377108  T
Q  277 ataca 281  Q
     ||||    
T  40377109 ttaca 40377113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 48022494 - 48022386
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| ||||||| ||||| | || ||||||| ||||| ||| ||| || ||||||| ||| || |||| ||  ||| |||||| |||||||||    
T  48022494 ttagggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcatt 48022395  T
Q  275 gaatacata 283  Q
     ||||||||    
T  48022394 caatacata 48022386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 45359339 - 45359284
Alignment:
Q  224 attaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    ||||||||||| ||||||||| |||| ||| | |||||||| ||||||||||||||    
T  45359339 attaagaaattgttatttaaaaaagttaaatagttcaattttcaatgcattgaata 45359284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 3756041 - 3755943
Alignment:
Q  203 ggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||| ||||| | ||||| ||| |||||||||||| ||||||  |||||| ||||| ||||| |||| | |||| |||||| | ||||||||| |||||    
T  3756041 ggcattctttaaacattctaaaataagaaattattctttaaaagagtcaatcattttaatttgcaattcgttgattacatacatttttataaatactta 3755943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 25670860 - 25670786
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| |||||| |||||||| | | |||||| ||||||||||| | |||| ||||| | |||||||||    
T  25670860 aagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttaacaaaaactta 25670786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 38491211 - 38491292
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||||||||| || || ||||||| || ||||||||| | || |||||||  ||| |||||| ||||||||| ||||||    
T  38491211 cggggcactctttcagaatcccaaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaataca 38491292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 41649894 - 41649959
Alignment:
Q  218 ttccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||| |||||| ||||||||  ||||| ||||  ||||||||||||||| ||||||||||| ||||    
T  41649894 ttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcata 41649959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 17112673 - 17112779
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt---aaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||| ||||||| |||  || |||||||||| |||||  |||| |||| ||||||||||    ||| |||||||| ||||  ||||||||||||||||    
T  17112673 gtcttgttaacgagtgccttcgaggcactctttaagcatggcaaaataagtaattattattcttcaaaaaagtcaaatattttgatttccaatgcattga 17112772  T
Q  277 atacata 283  Q
     ||||||    
T  17112773 ttacata 17112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 39156228 - 39156332
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| ||||| | | |||||||| |||||   ||||| || ||||||| ||| || |||||||  | | |||||||||||||||| |    
T  39156228 agggtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattca 39156327  T
Q  277 ataca 281  Q
    |||||    
T  39156328 ataca 39156332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 9153573 - 9153443
Alignment:
Q  217 attccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacattt---ccctta 313  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||||||||||||||||||||||||| | | |||||| ||||||||  ||||    |||||    
T  9153573 attccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaatacacaaatttttat-aaaacttactatttaggtcctta 9153475  T
Q  314 aagagtgccttgggggcactcgttagcttttc 345  Q
    ||| |||||  |||||||||||||||| ||||    
T  9153474 aagtgtgccccgggggcactcgttagcatttc 9153443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 13538363 - 13538469
Alignment:
Q  178 gggtcttgctaacgagcgcccccg-gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||| | ||||||  |||||||| |||||| || ||||| | ||||||||||||||||||||    
T  13538363 gggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattga 13538462  T
Q  277 atacata 283  Q
    |||||||    
T  13538463 atacata 13538469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 32859751 - 32859856
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    |||||||||| ||||||| |||||| ||||||||||| | ||| | |||||| ||| ||||| |||||| |||||||||| |||||||||||||| |||     
T  32859751 tagggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtatta 32859850  T
Q  276 aataca 281  Q
    ||||||    
T  32859851 aataca 32859856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 3882579 - 3882687
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    ||||||||||||| ||||||| |||| ||||||||||||| ||||||| ||| |||| ||||||| |||||| | |||||| |||||  ||| |||||||    
T  3882579 ttttagggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgca 3882678  T
Q  273 ttgaataca 281  Q
    |||| ||||    
T  3882679 ttgattaca 3882687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 2826095 - 2825971
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| | ||| | || ||||||| ||||| | ||| |||||||||||| |||||| |||| ||| ||||| ||||||||||||||||    
T  2826095 agggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattga 2825996  T
Q  277 atacatagacttttataaaaactta 301  Q
     |||| | | ||||||||| |||||    
T  2825995 ttacacacatttttataaatactta 2825971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 8964386 - 8964463
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||| ||| ||||||| |||||||| ||||||| |||||| |||| ||| |||||||||||||||||||||| ||||    
T  8964386 gcactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattaca 8964463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 6761839 - 6761759
Alignment:
Q  203 ggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||||||| |||||||||||  || |||| ||| | |||| |||||||| |||||||||||||||||||||| ||||||    
T  6761839 ggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgattacata 6761759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 24389739 - 24389628
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaact 299  Q
    ||||||||||||| ||||| | |||||||| ||||||| ||| |||| ||||||  ||||||||||||||||  ||| |||| | ||||| |||| || |    
T  24389739 cggggcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgcgctgattacacaaactttcataagaagt 24389640  T
Q  300 taacatttccct 311  Q
    || |||||||||    
T  24389639 taccatttccct 24389628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 6334783 - 6334681
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaaca 304  Q
    |||||||| | ||| | ||||||| |||||||| |||||| | ||||||  ||||||||||||||||||||| || ||| |||||| |||||| ||| ||    
T  6334783 cactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgcattgattatataaacttttgtaaaaagttatca 6334684  T
Q  305 ttt 307  Q
    |||    
T  6334683 ttt 6334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 44330718 - 44330644
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||||||||||| |||||||| | | |||||||||||||||||| | |||| | ||| |||||||||||    
T  44330718 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 44330644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 44365492 - 44365418
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||||||||||| |||||||| | | |||||||||||||||||| | |||| | ||| |||||||||||    
T  44365492 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 44365418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 8333665 - 8333589
Alignment:
Q  225 ttaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||| ||||||| |||||  ||||||||||||||||||  |||||||| ||||||| | | |||||||||||||||    
T  8333665 ttaagtaattattctttaataaagtcaaacatttcaattctcaatgcatcgaatacacaaatttttataaaaactta 8333589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 15120181 - 15120062
Alignment:
Q  182 cttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt-atttaaagaagtcaaacatttcaatttccaatgcattgaatac 280  Q
    |||||||||||| ||||   ||||||||||| || ||||| |||||||||| | || ||||||| || ||||  | |||||||||||||||||| ||| |    
T  15120181 cttgctaacgagtgcccttagggcactctttaaggattcctaattaagaaaatgtttatttaaaaaaatcaattagttcaatttccaatgcattaaattc 15120082  T
Q  281 atagacttttataaaaactt 300  Q
    ||  | ||||||||||||||    
T  15120081 atcaatttttataaaaactt 15120062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 18375058 - 18375153
Alignment:
Q  206 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||| || ||||| ||| ||||||||||| |||||| |||||||| | | |||||| ||||||||||| | |||| ||||| | |||||||||    
T  18375058 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttgacaaaaactta 18375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 18684323 - 18684433
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttga--gcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatg 270  Q
    ||||||||||||| ||||||| || | |||| |||||||| |  |||| | |||||| ||| ||||| |||||| |||||| ||| ||||||||||||||    
T  18684323 ttttagggtcttgttaacgagtgctctcgggacactcttttaaagcatgctaaattaggaagttattctttaaaaaagtcatacaattcaatttccaatg 18684422  T
Q  271 cattgaataca 281  Q
     ||| ||||||    
T  18684423 tattaaataca 18684433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 34546402 - 34546303
Alignment:
Q  182 cttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||| ||||||| ||||| || |||||||||||| ||||||||| ||||||||| | | |||| |||||||| | ||| |||||  ||||||||| ||||    
T  34546402 cttgttaacgagtgcccctggagcactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattaca 34546303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 44195499 - 44195594
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||||||||| ||||||  |||||||||||||||| |||| | |||| ||| | |||||||| ||||||||| |||||| |   |||||||||||    
T  44195499 gggcactctttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgcattaaatacacatgtttttataaaaa 44195594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 1335023 - 1334921
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| |||||||   | |||||||||||||| ||||| ||||||| |  ||||||| |||||| || ||||  ||| |||||||||||||||| |    
T  1335023 agggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattca 1334924  T
Q  277 ata 279  Q
    |||    
T  1334923 ata 1334921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 19495216 - 19495297
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaaca 304  Q
    |||||||| ||||||||||| || |||||||| ||||| |||||||||||||||| ||||   | ||||||||| ||||||||    
T  19495216 aaattaagtaattattattttaa-aagtcaaatatttcgatttccaatgcattgattacacccatttttataaatacttaaca 19495297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 16944801 - 16944862
Alignment:
Q  246 aagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacattt 307  Q
    ||||||| ||||||||||| ||||| |||||||||| | | ||||||||||||||| |||||    
T  16944801 aagtcaatcatttcaattttcaatgtattgaatacacaaatttttataaaaacttaccattt 16944862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 17015466 - 17015527
Alignment:
Q  246 aagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacattt 307  Q
    ||||||| ||||||||||| ||||| |||||||||| | | ||||||||||||||| |||||    
T  17015466 aagtcaatcatttcaattttcaatgtattgaatacacaaatttttataaaaacttaccattt 17015527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 33963036 - 33962981
Alignment:
Q  223 aattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||    
T  33963036 aattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaat 33962981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 18053159 - 18053057
Alignment:
Q  174 tttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcat 273  Q
    |||||||||||| ||||||| |  || ||| |||||||| || ||| ||||  ||||||||||| | |||| |||||||| ||||  |||||| ||||||    
T  18053159 tttagggtcttgttaacgagtgttcctgggacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcat 18053060  T
Q  274 tga 276  Q
    |||    
T  18053059 tga 18053057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 24791999 - 24792081
Alignment:
Q  220 ccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata-gacttttataaaaactta 301  Q
    ||||||| ||||| |||| |||||| ||||||||  || ||| |||||||||||||| ||||||  | |||||||||||||||    
T  24791999 ccaaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaactta 24792081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 27501824 - 27501750
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| ||| || |||||||| | |||||||||||||||||| | | |||| ||||| | |||||||||    
T  27501824 aagaaattatttttttaaaaagtcaaaaacttcaatttccaatgcattaatttcataaactttgacaaaaactta 27501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 41543945 - 41544051
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagt-caaacatttcaatttccaatgcattga 276  Q
    |||||||| |||||||  | |||| |||| ||||| |||||   |||||| ||||||||| |||||| || | |||| | |||||||||||||||| |||    
T  41543945 gggtcttgttaacgagtactcccgaggcattctttaagcatattaaattaggaaattattctttaaaaaaattcaaatagttcaatttccaatgcaatga 41544044  T
Q  277 atacata 283  Q
    |||||||    
T  41544045 atacata 41544051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 14663291 - 14663222
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||| ||| ||||||  ||||||| |||||||| |||||| |||||||| | ||||||||||||| ||||    
T  14663291 cactttttaagcattttaaattaaaaaattattctttaaataagtcaaatagttcaatttccaatacatt 14663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 20128308 - 20128417
Alignment:
Q  188 aacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagact 287  Q
    |||||| ||||||||| |||||||| || || | ||||| | || ||||| |||||| ||||||||  || ||| |||||||||||||| ||||   | |    
T  20128308 aacgagtgcccccgggacactctttaaggatcctaaatttataatttattctttaaaaaagtcaaatgttacaaattccaatgcattgattacacgtatt 20128407  T
Q  288 tttataaaaa 297  Q
    ||||||||||    
T  20128408 tttataaaaa 20128417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 24765329 - 24765426
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||| || || ||||||| ||||| ||||  ||||| || ||||| ||| ||| |||||||||||||| |||| | | |||||||| ||||||    
T  24765329 gcactctttaaggatcccaaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataactta 24765426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 24762853 - 24762729
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| |||  | || |||||||| || || ||||||| ||||| ||||  ||||| |||||||| ||| ||| |||||||  |||||    
T  24762853 agggtcttgttaacgagtgccttcaggtcactctttaaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattga 24762754  T
Q  277 atacatagacttttataaaaactta 301  Q
     || | | | |||||||||||||||    
T  24762753 ttatacatatttttataaaaactta 24762729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 25093865 - 25093909
Alignment:
Q  221 caaattaagaaattattatttaaagaagtcaaacatttcaatttc 265  Q
    |||||||||||||||||  ||||| |||||||| |||||||||||    
T  25093865 caaattaagaaattatttattaaaaaagtcaaatatttcaatttc 25093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 33276004 - 33275940
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    |||||||| ||||||| |||  ||||||||||| |||||| |||| ||| |||||||||| ||||    
T  33276004 cactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaat 33275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 43745591 - 43745651
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt 237  Q
    ||||||||| ||||||| ||||   ||||||||||| || ||||||||| |||||||||||    
T  43745591 agggtcttgttaacgagtgcccttagggcactctttaaggattccaaataaagaaattatt 43745651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 53040436 - 53040556
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||||||||||||  | | || | |||||||| || |||| ||||||||||||||||||||||| || ||||| | |||||||||||||| |||||    
T  53040436 agggtcttgctaacgagtactctcgtgacactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattga 53040535  T
Q  277 atacatagacttttataaaaa 297  Q
    ||||| | ||||| |||||||    
T  53040536 atacacaaactttcataaaaa 53040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 54290916 - 54290812
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| |||||||   |||||||||||||||| |||||   |||||| ||| ||||| |||||| |||||||||| |||||||||||||| ||| |    
T  54290916 agggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaa 54290817  T
Q  277 ataca 281  Q
    |||||    
T  54290816 ataca 54290812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 45529248 - 45529134
Alignment:
Q  187 taacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagac 286  Q
    ||||||| |||| ||||||||||||| ||||| ||||||| ||||| |||| || ||| ||||||||| || ||| || || |||||||| |||||| |     
T  45529248 taacgagtgccctcggggcactctttaagcatcccaaatttagaaaatattcttcaaaaaagtcaaacgttacaagtttcagtgcattgattacataaat 45529149  T
Q  287 ttttataaaaactta 301  Q
    ||| |||||||||||    
T  45529148 tttcataaaaactta 45529134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 30464073 - 30463992
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||| || |||||||||||  ||||||||||| | |||| |||||||||||||||||||  |||||||||| ||||    
T  30464073 cggggcactcgttaagcattccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 3027124 - 3027029
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    ||||||||| ||||||| ||| |||| ||||||||| ||||||| |||||||| |||| ||||||||| |  |||||  ||||| |||||||||||    
T  3027124 agggtcttgttaacgagtgcctccggagcactctttaagcattctaaattaagtaatttttatttaaaaatatcaaaggtttcattttccaatgca 3027029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 37708405 - 37708522
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| |||| || ||||||| |||||||||| |||||   ||| |||| ||||| | |||||| |||| |||||||||||||| ||||||| |||     
T  37708405 gggtcttgttaacaagtgcccccgaggcactctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgat 37708504  T
Q  278 tacatagacttttataaa 295  Q
    |||||  | |||||||||    
T  37708505 tacatgtatttttataaa 37708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 52299036 - 52299133
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||| || ||||| ||| |||||||||||  ||||| |||||||| | | |||||||||||||||||| | |||| ||||| | |||||||||    
T  52299036 gcactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 52299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 25317772 - 25317892
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||||||| ||||| |||||||  ||||| | |||| ||| ||||||| ||| || |  | |||  |||||||||||||||||| ||    
T  25317772 agggtcttgttaacgagcgcctccgggacactcttcaagcatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgcatcga 25317871  T
Q  277 atacatagacttttataaaaa 297  Q
     |||| | |||||||||||||    
T  25317872 ttacacaaacttttataaaaa 25317892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 29611986 - 29612082
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||||| ||||||| ||||||||| |||||||| | ||||| ||| |||| ||||||| |||||| | || | |  |||||||||||||||||    
T  29611986 tagggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaattattctttaaaaatgtgacagttttcaatttccaatgca 29612082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 338
Target Start/End: Complemental strand, 4305278 - 4305120
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| ||||| |||||||||||| || || | ||||| ||||  |||| |||||| |||||||| |||  || ||| |||| ||||| ||    
T  4305278 gtcttgttaacgagtgcccctggggcactctttaaggatactaaatttagaatatattttttaaaaaagtcaaatattataaattctaatgtattgatta 4305179  T
Q  280 catagactttt-ataaaaacttaacatttcccttaaagagtgccttgggggcactcgtta 338  Q
    ||  || |||| |||||||||||  |||  ||||||||||||||  ||||||||||||||    
T  4305178 ca-cgatttttcataaaaacttacaattgtccttaaagagtgccccgggggcactcgtta 4305120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 17517516 - 17517587
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaa 244  Q
    ||||||||||||| ||||||| || ||||||||||||||| | |||||| ||| ||||||| ||| ||||||    
T  17517516 ttttagggtcttgttaacgagtgctcccggggcactctttaaacattcctaataaagaaataattctttaaa 17517587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 23554811 - 23554709
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    ||||| |||||||||| ||||||||| |||||||| || ||||  ||| ||||||||||| |||||| ||||||||  || | |||||||||||| | ||    
T  23554811 gggtcctgctaacgagtgcccccgggacactctttaaggattcttaataaagaaattattttttaaa-aagtcaaagtttacgatttccaatgcaataaa 23554713  T
Q  278 taca 281  Q
    ||||    
T  23554712 taca 23554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 48551007 - 48551102
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    ||||| ||| ||||||| | |||| | ||||||||| ||||| | |||||||||||||||| |||||| | ||||||  ||||||||| |||||||    
T  48551007 agggtgttgttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgca 48551102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 41571683 - 41571601
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaatta-ttatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    |||||||||||| |||||||||||  ||||||||| ||  ||||| ||| |||| ||||||||||| |||||||||| |||||    
T  41571683 ggggcactctttaagcattccaaaagaagaaattatttcattaaaaaagccaaaaatttcaatttcgaatgcattgattacat 41571601  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 46712004 - 46711930
Alignment:
Q  226 taagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactt 300  Q
    |||| ||||||| |||||| |||||||||||||  |||||||||||||||| |||||  | ||||||||| ||||    
T  46712004 taagtaattattctttaaaaaagtcaaacattttgatttccaatgcattgattacatgcatttttataaatactt 46711930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 24313522 - 24313615
Alignment:
Q  181 tcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||| ||||||| | || ||||||||||||| | ||||| |||||||  ||||||| |||||| | ||||||  ||||||||| |||||||||    
T  24313522 tcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattttcaatgcatt 24313615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 46547857 - 46547813
Alignment:
Q  239 tttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||| |||||||| | |||||||||||||||||||||||||||    
T  46547857 tttaaaaaagtcaaataattcaatttccaatgcattgaatacata 46547813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 2831542 - 2831601
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaattt 264  Q
    |||||||| || ||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  2831542 cactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattt 2831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 38009007 - 38009094
Alignment:
Q  184 tgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaaca-tttcaatttccaatg 270  Q
    |||||||||| |||  || |||||||||| ||||||| ||||| ||||||||||  ||||  |||||||||| ||||||||| |||||    
T  38009007 tgctaacgagtgccttcgaggcactctttaagcattctaaattgagaaattattccttaagaaagtcaaacattttcaattttcaatg 38009094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 40546348 - 40546399
Alignment:
Q  231 aattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    ||||||| |||||| |||||||| ||||| |||||||||||||||| |||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattacat 40546399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 51039767 - 51039842
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||||| |||||||| | |||| |||||||| | |||||||| ||||| |||||||||||| | ||| |||||||    
T  51039767 aaattaaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaaaa 51039842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 49197149 - 49197087
Alignment:
Q  207 ctctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    |||||| || ||| |||||||| |||||||||||| || |||||||||| |||||||| ||||    
T  49197149 ctctttaagaatttcaaattaataaattattattttaaaaagtcaaacaattcaattttcaat 49197087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 52638275 - 52638173
Alignment:
Q  199 ccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaac 298  Q
    ||||| |||||||| || || | ||||| || ||||||||||| || ||| |||  ||| |||||||||||||| |||||||| |   ||||||||||||    
T  52638275 ccgggacactctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtgaatacacaattttttataaaaac 52638176  T
Q  299 tta 301  Q
    |||    
T  52638175 tta 52638173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 13804956 - 13804883
Alignment:
Q  208 tctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||| || ||||| ||||||||||| |||  || || |||||||| | ||| |||||||||||||||||||||    
T  13804956 tctttaaggattccgaattaagaaatcattccttcaaaaagtcaaatacttcgatttccaatgcattgaataca 13804883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 18399275 - 18399194
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatt-taaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||||| || ||||||||  ||||||| ||| || |||| |||||||| ||||| |||||| ||||||||| ||||    
T  18399275 ggggcactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattaca 18399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 52308986 - 52309043
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt 237  Q
    |||||| ||||||| |||||||||||||||||| ||||| |||||  ||| |||||||    
T  52308986 gtcttgttaacgagtgcccccggggcactctttaagcataccaaaacaagcaattatt 52309043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 25461440 - 25461543
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtc-aaacatttcaatttccaatgcattgaa 277  Q
    ||||||| ||||||| ||| | |||||||||||| | |||| |||| ||||  |||||| |||||| ||||| ||| |||||||||||||| ||| |||     
T  25461440 ggtcttgttaacgagtgcctc-ggggcactctttaaacattgcaaaataagccattattctttaaaaaagtcaaaatatttcaatttccaaggcaatgat 25461538  T
Q  278 tacat 282  Q
    |||||    
T  25461539 tacat 25461543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 43803992 - 43804040
Alignment:
Q  233 ttattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||| |||||| |||||||||| |||||||||||||| ||| ||||||    
T  43803992 ttattctttaaaaaagtcaaacaattcaatttccaatgtattaaataca 43804040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 1876617 - 1876491
Alignment:
Q  181 tcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatac 280  Q
    ||||| ||||||| |||||||||||||||||| ||||| | |||||||| ||||||| ||| || | ||||||  ||||||||||||||||| ||| |||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactgattac 1876518  T
Q  281 atagacttttataaaaacttaacattt 307  Q
    | | ||||| ||||||| ||| |||||    
T  1876517 acaaactttcataaaaaattaccattt 1876491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 31264962 - 31265068
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| ||||||| ||||| | |||||||||| ||||| | |||||| ||| ||||| |||||| |||||||||| |||||||||||||| |||    
T  31264962 ttagggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttccaatgtatt 31265061  T
Q  275 gaataca 281  Q
     ||||||    
T  31265062 aaataca 31265068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 20279694 - 20279590
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| |||| || |||||||||||||||||| ||||||| ||| |||| ||||||| ||| || |||||||| |||||||||| |||| |||| |    
T  20279694 agggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacattaa 20279595  T
Q  277 ataca 281  Q
    |||||    
T  20279594 ataca 20279590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 21066321 - 21066217
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| |||| || |||||||||||||||||| ||||||| ||| |||| ||||||| ||| || |||||||| |||||||||| |||| |||| |    
T  21066321 agggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacattaa 21066222  T
Q  277 ataca 281  Q
    |||||    
T  21066221 ataca 21066217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 39691252 - 39691149
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||| ||| ||||||| |||| || | |||||||| ||||||||| ||||| |||||||| |||||| |||||||| | |||||||| ||||||||||||    
T  39691252 gggttttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaa 39691153  T
Q  278 taca 281  Q
    ||||    
T  39691152 taca 39691149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 42636506 - 42636401
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    |||||||||| ||| ||| || ||||||||||||||| ||||| ||||||| || |||||||||| ||| |||||||  ||| |||||| |||||||||     
T  42636506 tagggtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcattt 42636407  T
Q  276 aataca 281  Q
    ||||||    
T  42636406 aataca 42636401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 41106119 - 41106036
Alignment:
Q  195 gcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||| |||||||| |||||| ||||||||||||||||||| |  ||||| |||||||| | |||||||| |||||||||||||    
T  41106119 gcccctggggcactgtttgaggattccaaattaagaaattaatcattaaaaaagtcaaatagttcaattttcaatgcattgaat 41106036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 34336585 - 34336488
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||| || ||||  ||| ||||||||||| |||||| |||||||| | |||||||||||||||||||| | |||| ||||| | |||||||||    
T  34336585 gcactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaactta 34336488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 37564468 - 37564367
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| ||| | ||| |||||||| | ||| | |||||||||||||||| |||||| |||||||| | |||||||||||||| ||| ||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtattaaata 37564369  T
Q  280 ca 281  Q
    ||    
T  37564368 ca 37564367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 37813522 - 37813437
Alignment:
Q  197 ccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||||||||| || || ||||||| || ||||||| ||| ||| ||||||| |||| |||||||||||||||||||||||    
T  37813522 ccccggggcactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaataca 37813437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 27734483 - 27734375
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||| |||| ||||||||||| ||||||||  |||||||| || || ||||||| ||||||||||  || || ||||| || ||| ||| ||||||||||    
T  27734483 tttttgggttttgctaacgagtgcccccggatcactctttaaggatcccaaatttagaaattattccttcaaaaagtctaatattacaaattccaatgca 27734384  T
Q  273 ttgaataca 281  Q
    |||||||||    
T  27734383 ttgaataca 27734375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 18808905 - 18808775
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| || ||||||||||||||| | |||||| ||| |||||| |||| |||||| ||   ||| | ||||||||| |||||| | |    
T  18808905 agggtcttgttaacgagtgctcccggggcactctttaaacattcctaatgaagaaactattgtttaaaaaaagtaaagacttcaatttctaatgcaataa 18808806  T
Q  277 atacatagacttttataaaaacttaacattt 307  Q
    || |||| ||||| |||||| |||| |||||    
T  18808805 atgcataaactttcataaaatcttaccattt 18808775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 25382592 - 25382694
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    |||||| ||||||| |||||||  ||| | ||| |||||||||||||||||||||||| ||| ||| |||| ||| | | |||||||||||||||| |||    
T  25382592 gtcttgttaacgagtgcccccgaagcattttttaagcattccaaattaagaaattattctttaaaaaaagtaaaatagtccaatttccaatgcattaaat 25382691  T
Q  279 aca 281  Q
    |||    
T  25382692 aca 25382694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 28207591 - 28207695
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| ||||||| | |||||||| ||||| ||||||| |  ||| ||| ||| || |||||||  ||| |||||||||||||||| |    
T  28207591 agggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattca 28207690  T
Q  277 ataca 281  Q
    |||||    
T  28207691 ataca 28207695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 12002257 - 12002354
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||||||||||| || || | |||||||| ||||||| |||||| | || |||  ||||||||||||||||| ||| |||| | | |||||||||||    
T  12002257 cggggcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaaaa 12002354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 28460128 - 28460007
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| |  ||||||||||||||| |||||||| ||| || |||||||| ||||||  | | ||| | |||||||||||||||| | |||     
T  28460128 gtcttgttaacgagtgatcccggggcactctttaagcattcctaataaaaaaattattttttaaaataattaaagacttcaatttccaatgcaataaatg 28460029  T
Q  280 catagacttttataaaaactta 301  Q
    || | ||||| |||||| ||||    
T  28460028 cacaaactttaataaaatctta 28460007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 7513431 - 7513311
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| |  ||||||||||||||| |||||  ||||  ||| ||||||| |||| | || | ||||||||| |||| ||||||||||| ||    
T  7513431 gtcttgttaacgagtgttcccggggcactctttaagcatatcaaaacaagcaattattctttagaaaaattaaacatttcgattttcaatgcattgatta 7513332  T
Q  280 catagacttttataaaaactt 300  Q
    |||  | ||||||||| ||||    
T  7513331 catgtatttttataaatactt 7513311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 25163133 - 25163065
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcat 273  Q
    |||||||| || |||| ||||||| |||||||| ||  || |||||||| |||||||||||||||||||    
T  25163133 cactctttaagtattcaaaattaaaaaattattcttagaaaaagtcaaatatttcaatttccaatgcat 25163065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 25279894 - 25280001
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||| |||||| ||||||| |||||   | |||||||| ||||| | |||||| ||| ||||| |||||| |||||||| | |||||||||||||| |||    
T  25279894 ttagagtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattctttaaa-aagtcaaataattcaatttccaatgtatt 25279992  T
Q  275 gaatacata 283  Q
     ||||||||    
T  25279993 aaatacata 25280001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 297
Target Start/End: Complemental strand, 29487174 - 29487078
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaag-tcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||||||||| |  |||| |||||||||||||||| |||||| ||| | ||| | |||||||| ||||||||| |||||| | | |||||||||||    
T  29487174 gggcactcttttaatattctaaattaagaaattattctttaaaaaagtttaaatagttcaattttcaatgcatttaatacacatatttttataaaaa 29487078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 41385235 - 41385412
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| | ||||| |||| ||||| |||| |||||| ||||||||||||  ||||  |||||| |  ||||||||| ||||| ||||| ||    
T  41385235 gtcttgttaacgagtgtccccgaggcattctttaagcaatccaaaataagaaattattccttaagaaagtcagatgtttcaattttcaatgtattgatta 41385334  T
Q  280 catagacttttataaaaacttaacattt----cccttaaagagtgccttgggggcactcgttagcttttcactttctt 353  Q
    || | | ||| | ||||  |||  ||||    |||||||||||||||  |||||||||||||| | |||| |||||||    
T  41385335 cacaaattttcacaaaattttactatttataacccttaaagagtgccccgggggcactcgttaacatttccctttctt 41385412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 44254266 - 44254142
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| | ||   ||||||||||| || ||| | ||| |||||||| ||  ||||| |||||||| | ||||||||||||||||||||    
T  44254266 agggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattga 44254167  T
Q  277 atacatagacttttataaaaactta 301  Q
     | |||| | ||| | |||||||||    
T  44254166 tttcataaattttgacaaaaactta 44254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 42022703 - 42022640
Alignment:
Q  206 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    ||||||| ||||||  ||||||| |||||||| |||||| |||||||| | |||||||||||||    
T  42022703 actctttaagcattttaaattaaaaaattattttttaaaaaagtcaaatagttcaatttccaat 42022640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 9460428 - 9460522
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||||| ||||||| |||||  |||||||| || ||||| |||||  ||| ||||||| |||| | |||||||||||||| |||| |||| ||||    
T  9460428 gtcttgttaacgagtgccccgagggcactcgttaagcataccaaaacaagcaattattctttagaaaagtcaaacatttcgattttcaatacatt 9460522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 42760258 - 42760180
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||||| |||||||||||   ||||||||||   |||| || |||||  ||||||||||||||||||||| ||||||    
T  42760258 cactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattacata 42760180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 11533244 - 11533329
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacattt 307  Q
    ||||||| |||||||| |||||| | ||||||  ||||||||||||||||| ||||  || | ||||| ||||||| ||| |||||    
T  11533244 aaattaataaattattctttaaaaatgtcaaagttttcaatttccaatgcactgaaggcacaaactttcataaaaaattaccattt 11533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 15352182 - 15352117
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    ||||||||| | ||||| ||||||| |||||||| | |||| |||||||| | |||||||||||||    
T  15352182 gcactctttaaacattctaaattaaaaaattattctgtaaaaaagtcaaatagttcaatttccaat 15352117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 24733130 - 24733263
Alignment:
Q  168 attacttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttcca 267  Q
    ||||||||| |||| ||| ||||||| | |||||||  ||||||| || || ||||||| | ||| |||| | |||| ||||||||  || ||| || ||    
T  24733130 attactttttgggtgttgttaacgagtgtccccgggatactctttaaggatcccaaatttaaaaaatattctctaaaaaagtcaaatgttacaaattaca 24733229  T
Q  268 atgcattgaatacatagacttttataaaaactta 301  Q
     |||||||| |||| | | |||||||||||||||    
T  24733230 gtgcattgattacacaaatttttataaaaactta 24733263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 31844354 - 31844262
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    ||||||| ||||||| ||||| ||| |||||||| |  |||| |||||||| |||||||  ||||| ||||||||  ||| |||||||||||||    
T  31844354 ggtcttgttaacgagtgccccaggg-cactctttaaatattctaaattaagtaattattccttaaaaaagtcaaagttttgaatttccaatgca 31844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 36924012 - 36924093
Alignment:
Q  187 taacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaa 268  Q
    ||||||| || ||||||| ||||||| |||  || |||  ||||||||||| |||||| |||||||| ||||| ||||||||    
T  36924012 taacgagtgctcccggggtactctttaagctatcaaaaacaagaaattattctttaaaaaagtcaaatatttcgatttccaa 36924093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 39093051 - 39093156
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaa-gaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    ||||||||| ||||||| | |||||||| ||||||| ||||| |||||  || | ||||||| |||||| ||||  || ||||| | |||||||||||||    
T  39093051 agggtcttgttaacgagtgtccccggggtactctttaagcataccaaacaaaagcaattattctttaaaaaagtataatatttcgagttccaatgcattg 39093150  T
Q  276 aataca 281  Q
    | ||||    
T  39093151 attaca 39093156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 12229994 - 12230061
Alignment:
Q  215 gcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||||| |||| ||||||||||| |||||| |||| ||| | |||||||||||| || |||||||||||    
T  12229994 gcattctaaatcaagaaattattctttaaa-aagtgaaatagttcaatttccaaggccttgaatacata 12230061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 17599234 - 17599278
Alignment:
Q  216 cattccaaattaagaaattattatttaaagaagtcaaacatttca 260  Q
    ||||| |||||||| ||||||| |||||| |||||||||||||||    
T  17599234 cattctaaattaagtaattattctttaaaaaagtcaaacatttca 17599278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 36348627 - 36348523
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||  | | |||||||||| ||| ||||  | ||| |||| ||||||| |||||| |||| ||||||||  |||| |||||||||||     
T  36348627 gggtcttgttaacgaatgtctccggggcactttttaagcacactaaaataagcaattattctttaaaaaagttaaacattttgattttcaatgcattgat 36348528  T
Q  278 tacat 282  Q
    |||||    
T  36348527 tacat 36348523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 25438018 - 25437909
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgc 271  Q
    ||||||||||||| ||||||| ||||||||| |||||||| ||||| | |||||||||| ||||| ||| ||| |||| ||||| ||||||||||||||     
T  25438018 ttttagggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaagaagttattctttaaaaaaagtgaaacagttcaatttccaatgt 25437919  T
Q  272 attgaataca 281  Q
    ||| ||||||    
T  25437918 attaaataca 25437909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 41583510 - 41583630
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| ||||||||| |||||||| || || ||||||| ||||||||||  || || |||| ||| ||| ||| ||||||||||||||    
T  41583510 agggtcttgttaacgagtgcccccgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattga 41583609  T
Q  277 atacatagacttttataaaaa 297  Q
    ||||| ||| ||| |||||||    
T  41583610 atacacagattttcataaaaa 41583630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 16161408 - 16161506
Alignment:
Q  199 ccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    |||||||||||||| |||||||||||||| ||||||||| || ||| |||| ||| | |||||||| ||||| ||| |||||| | | |||||||||||    
T  16161408 ccggggcactctttaagcattccaaattaggaaattatttttaaaaaaagttaaataattcaattttcaatggattaaatacacatatttttataaaaa 16161506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 27016661 - 27016743
Alignment:
Q  200 cggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    ||||||||||||| |||||||||||  |||||||||||   |||| |||||||| ||||||||||||||||||| || |||||    
T  27016661 cggggcactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgcatcgattacat 27016743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 30501277 - 30501175
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||| ||||||| |||||| ||||||||||| ||||| ||||||| || ||||||| ||| || |||||||  ||| ||||||||||| |||| |||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30501178  T
Q  279 aca 281  Q
    |||    
T  30501177 aca 30501175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 30541620 - 30541518
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||| ||||||| |||||| ||||||||||| ||||| ||||||| || ||||||| ||| || |||||||  ||| ||||||||||| |||| |||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30541521  T
Q  279 aca 281  Q
    |||    
T  30541520 aca 30541518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 967098 - 967174
Alignment:
Q  206 actctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    ||||||| ||||| |||||||| || |||||| |||||| || ||||| | ||||||||||||||||||||||||||    
T  967098 actctttaagcataccaaattaggatattattctttaaaaaattcaaatagttcaatttccaatgcattgaatacat 967174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 23023600 - 23023704
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||| || | ||||||||||    |||| |||||||   ||||||||| ||||||||| |    
T  23023600 agggtcttgttaacgagtgcccccggggcactctttaagcattctaattaaagaaattatccactaaaaaagtcaattgtttcaattttcaatgcattaa 23023699  T
Q  277 ataca 281  Q
    |||||    
T  23023700 ataca 23023704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 31672379 - 31672483
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt-atttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||   ||||| ||||   | ||| ||||||||  |||||||||||||||||||||    
T  31672379 gggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattga 31672478  T
Q  277 ataca 281  Q
     ||||    
T  31672479 ttaca 31672483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 17098323 - 17098234
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaa 268  Q
    ||||||| ||||||| | | |||||||||||||| | |||  |||| |||| |||||||||||||| |||||||| ||||| ||||||||    
T  17098323 ggtcttgttaacgagtgtcgccggggcactctttaaacatcacaaaataagcaattattatttaaaaaagtcaaatatttcgatttccaa 17098234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 34032229 - 34032124
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| | ||  |||||||||||| ||||||| ||| |||| ||||||| |||||| |||| ||| ||||||||||| || ||| |||    
T  34032229 agggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatga 34032130  T
Q  277 atacat 282  Q
     |||||    
T  34032129 ttacat 34032124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 591335 - 591239
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||| || ||| | ||| ||||||||||| |||||| ||||| || | |||||||||||||||||||| | |||| ||||| | |||||||||    
T  591335 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcattgatttcataaactttgacaaaaactta 591239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 30104771 - 30104875
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||| ||| |||| || |||| ||||||||||||| ||||| ||||||| || || |||| ||| || |||||||  ||| |||||||||||||||| |    
T  30104771 agggtattgttaacaagtgccctcggggcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattca 30104870  T
Q  277 ataca 281  Q
    |||||    
T  30104871 ataca 30104875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 26663639 - 26663706
Alignment:
Q  214 agcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||| ||| |||||||||||| |||||| |||||||| ||||| |||||||||| ||||| ||||    
T  26663639 agcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattaca 26663706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 26935234 - 26935301
Alignment:
Q  214 agcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||| ||| |||||||||||| |||||| |||||||| ||||| |||||||||| ||||| ||||    
T  26935234 agcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattaca 26935301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 5758548 - 5758695
Alignment:
Q  196 cccccggggcactctttgagcattccaaatt--aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttata 293  Q
    ||||| ||||||||||| ||||||| |||||  ||| || |||| |||||| |||  ||||||||||||| |||||  | |||||||| | ||||| |||    
T  5758548 cccccagggcactctttaagcattctaaattaaaagtaactattctttaaaaaagcgaaacatttcaattcccaat--actgaatacacaaactttcata 5758645  T
Q  294 aaaacttaacattt----cccttaaagagtgccttgggggcactcgttag 339  Q
    |||||||| |||||     ||||||| ||||||  |||||||||||||||    
T  5758646 aaaacttaccatttaaagtccttaaaaagtgccccgggggcactcgttag 5758695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 779056 - 779156
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| |||||| ||||||||||| | ||||| ||| | || ||||||| |||||| |||| |||  |||| |||||||||||||||| ||    
T  779056 gtcttgttaacgagtgccccctgggcactctttaaacattcaaaaattagtaattattttttaaa-aagttaaatgtttcgatttccaatgcattgatta 779154  T
Q  280 ca 281  Q
    ||    
T  779155 ca 779156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 2827692 - 2827579
Alignment:
Q  188 aacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagact 287  Q
    |||||| | |||||||||||||||| |  |||||||||| ||||| ||||||||||  ||||||||  || ||| || ||||||||||| | || | | |    
T  2827692 aacgagtgtccccggggcactctttaaagattccaaatttagaaaatattatttaagaaagtcaaatgttacaagtttcaatgcattgattgcacaaatt 2827593  T
Q  288 tttataaaaactta 301  Q
    || |||||||||||    
T  2827592 ttaataaaaactta 2827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 3263717 - 3263818
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    |||||| ||||||| ||  |||||||||||||| || ||| ||||  ||||||| ||| | |||| |||||||| ||||| |||||| ||||||||| ||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  280 ca 281  Q
    ||    
T  3263817 ca 3263818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 42265430 - 42265527
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||| || ||||  ||| || |||||||| |||||| |||||||| |||||||||| ||||||||||| | |||| ||||  | |||||||||    
T  42265430 gcactctttaaggattcttaataaaaaaattattctttaaaaaagtcaaaaatttcaattttcaatgcattgatttcataaacttagacaaaaactta 42265527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 14042433 - 14042529
Alignment:
Q  180 gtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||| |||||||| | | |||||  ||||||| |  |||| ||| ||| ||||||||||||||| |||||||| ||||  ||||||||||||||||    
T  14042433 gtcttactaacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattga 14042529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 23129350 - 23129433
Alignment:
Q  217 attccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||| ||| ||||||||||| |||||| |||||||| | | |||||||||||||||||| | |||| ||||| | |||||||||    
T  23129350 attcctaataaagaaattattttttaaa-aagtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 23129433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 32017537 - 32017458
Alignment:
Q  197 ccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    |||||||||||||||| | |||  ||||  ||| ||||||| |||||| |||| ||| |||||||||| |||||||||||    
T  32017537 ccccggggcactctttaaacatatcaaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatgcattga 32017458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 10410418 - 10410512
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||| ||||||| |||||||||||||||||| | | ||| |||||||| |||  || |||||| | |||| |   ||||||||||||||||    
T  10410418 gggtcttgttaacgagtgcccccggggcactctttaaactttctaaattaagtaatatttttttaaaaatgtcagaatattcaatttccaatgca 10410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 27146865 - 27146963
Alignment:
Q  203 ggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||| || ||| | ||| ||||||||||| |||||| |||| ||| | |  ||||||||||||||||| | |||| ||||| | |||||||||    
T  27146865 ggcactctttaaggatttctaataaagaaattattctttaaaaaagttaaaaactctaatttccaatgcattgatttcataaactttgacaaaaactta 27146963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 27650949 - 27650859
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttc 265  Q
    ||||||||||| |||||||  || ||||  |||||||| | |||||||||  ||||||||||||| |||| |||| ||| |||| ||||||    
T  27650949 ttagggtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattttaatttc 27650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 40872257 - 40872331
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| |||||| | || ||| | | |||||||||||||||||| | |||| ||||| |||||||||||    
T  40872257 aagaaattattctttaaaaaggttaaaaactccaatttccaatgcattgatttcataaactttgataaaaactta 40872331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 7719170 - 7719263
Alignment:
Q  176 tagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    |||||||||  ||||||| ||||||||| |||||||| ||||| ||| ||| | |||||||| ||| || || ||||  ||| |||||||||||    
T  7719170 tagggtctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaat 7719263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 27310353 - 27310260
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattcc-aaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    ||||| ||| || |||| ||| |||| ||||||||| ||||||   |||||| ||||||||| |||||| ||||| |||| |||||||||||||    
T  27310353 agggttttgttaccgagtgcctccggagcactctttaagcatttataaattatgaaattattctttaaaaaagtctaacaattcaatttccaat 27310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 3758221 - 3758269
Alignment:
Q  231 aattattatttaaagaagtcaaacatttcaatttccaatgcattgaata 279  Q
    ||||||| |||||| |||||||| ||||| |||| ||||||||||||||    
T  3758221 aattattctttaaaaaagtcaaatatttcgattttcaatgcattgaata 3758269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 27123242 - 27123338
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||| || ||| ||| ||| || |||||||  ||| ||||||||||||||||    
T  27123242 gggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcatt 27123338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 34681679 - 34681779
Alignment:
Q  197 ccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaa 296  Q
    |||||||||| ||||| ||||||| |||||| ||||||||| |||| | |||||||| | |||||||||||||||||| |||||| |   ||||||||||    
T  34681679 ccccggggcagtctttaagcattctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaatgcattaaatacacaagtttttataaaa 34681778  T
Q  297 a 297  Q
    |    
T  34681779 a 34681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 35567106 - 35567201
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||||||||| |||||| |||||||  |||||||| |||||| |||||||| |||| |||||||||| |||| |||||| | | |||||||||||    
T  35567106 gggcactcttttagcatttcaaattagaaaattattttttaaaaaagtcaaatattttaatttccaatacattaaatacacatatttttataaaaa 35567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 33887963 - 33887886
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    |||||||| ||||||||||| |||  ||||||| |||||| |||||||| |||||||||| ||||||||||| |||||    
T  33887963 cactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacat 33887886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 34299882 - 34299762
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| |||||||||||||| ||| ||||| | | |||||| ||||||| |||||| | ||||||  ||||||||| ||| ||| |||    
T  34299882 agggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaatttacaaagcactga 34299783  T
Q  277 atacatagacttttataaaaa 297  Q
     |||| | ||||| |||||||    
T  34299782 ttacacaaactttcataaaaa 34299762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 28770445 - 28770548
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| ||| |||||||||||||| ||||| ||||| | || ||||||| |||  | |||||||  ||| |||||||||||||||| ||    
T  28770445 gggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaa 28770544  T
Q  278 taca 281  Q
    ||||    
T  28770545 taca 28770548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 36973304 - 36973399
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt-aaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||| ||||||| ||| |||| ||||||||| |||||||||||||| ||| ||||| ||| ||| || ||||| | ||||||||||||||||    
T  36973304 gggtcttgttaacgagtgcctccggtgcactctttaagcattccaaattaggaagttattctttaaaaaaaatcaaataattcaatttccaatgca 36973399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 10032050 - 10031956
Alignment:
Q  187 taacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||| ||||||||| |||||||| ||||||||||| | || ||||||| ||| || |||| |||  |||| |||||||||||||||| ||||    
T  10032050 taacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgattaca 10031956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 33922868 - 33922760
Alignment:
Q  187 taacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagac 286  Q
    ||||||| |||| ||||||| | ||| ||||||| ||||||  |||||||| |||||| |||||||| | |||||||| |||||||||||| ||||| |     
T  33922868 taacgagtgcccacggggcatt-tttaagcattctaaattagaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaacacata-ag 33922771  T
Q  287 ttttataaaaa 297  Q
    |||||||||||    
T  33922770 ttttataaaaa 33922760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 17157913 - 17157804
Alignment:
Q  173 ttttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt-atttaaagaagtcaaacatttcaatttccaatgc 271  Q
    |||| |||||||| ||||||| ||||  |||||||||||| |||||||||||   ||||||||||   | ||| ||||||||  ||||||||||||||||    
T  17157913 tttttgggtcttgttaacgagtgcccttggggcactctttaagcattccaaaaggagaaattattccataaaaaaagtcaaatgtttcaatttccaatgc 17157814  T
Q  272 attgaataca 281  Q
    ||||| ||||    
T  17157813 attgattaca 17157804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 1360523 - 1360607
Alignment:
Q  197 ccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||| |||||||| ||||||||||| | || ||||||| |||||| |||| |||  |||| |||||||||||||||| ||||    
T  1360523 ccccgggacactctttaagcattccaaaattagtaattattttttaaaaaagttaaatgtttcgatttccaatgcattgattaca 1360607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 5248772 - 5248648
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| |||||||| ||    ||||||||||| || ||||| ||| ||||||||||| |||||| | || ||| | | ||||||||||||||||||    
T  5248772 agggtcttgttaacgagccccttaagggcactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttccaatgcattga 5248673  T
Q  277 atacatagacttttataaaaactta 301  Q
     | |||| ||||| | |||||||||    
T  5248672 tttcataaactttgacaaaaactta 5248648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 17302858 - 17302922
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattattt 241  Q
    ||||||||| ||||||| ||||||||  |||||||| |||||||| ||| |||||||||||||||    
T  17302858 agggtcttgttaacgagtgcccccggtacactctttaagcattcctaataaagaaattattattt 17302922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 27338253 - 27338321
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaat 269  Q
    |||||||||||| ||||| | ||||||  |||||||| |||||| || ||||||| |||||||||||||    
T  27338253 ggggcactctttaagcatgctaaattagaaaattattctttaaaaaaatcaaacagttcaatttccaat 27338321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 35599939 - 35599835
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||| ||||||| ||| ||| |  ||||||| | ||| | |||||| ||||||||| |||||| || ||||| | ||||| || |||||||||||||    
T  35599939 ggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcattgaat 35599840  T
Q  279 acata 283  Q
    |||||    
T  35599839 acata 35599835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 44719534 - 44719430
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| |||| || |||||||||||||| ||| ||   |||||| | || ||||||| |||||| |||||||||||||| ||||| ||  ||||||     
T  44719534 gggtcttgttaacaagtgcccccggggcactatttaagttatccaaaattagcaattattttttaaaaaagtcaaacatttcgatttctaaaacattgat 44719435  T
Q  278 tacat 282  Q
    |||||    
T  44719434 tacat 44719430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 47507577 - 47507681
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||||| ||||||| | | |||||||||||||| || |||| |||  ||||||| ||| | |||| || ||||| |||||||||||| ||| |||||    
T  47507577 agggtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattga 47507676  T
Q  277 ataca 281  Q
     ||||    
T  47507677 ttaca 47507681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 8920815 - 8920736
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    ||||||||| |||||||||||   ||||||||||   || | ||||||||  ||||||||||||||||||||| ||||||    
T  8920815 gcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatgcattgattacata 8920736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 18926319 - 18926398
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||||||| ||||||  |||| | ||||||||| |||||| | || ||| | |||||||| ||||||||||||||||    
T  18926319 gggcactctttaagcattttaaatcatgaaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaataca 18926398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 26402896 - 26402797
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| || ||||| ||| |||||||||||  ||||| |||||||| | |||||||| |||| |||||| | |||| | ||| | |||||||||    
T  26402896 gggcactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaacttcaattttcaatacattgatttcataaattttgacaaaaactta 26402797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 26804105 - 26804034
Alignment:
Q  230 aaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||| |||||| |||||||| | |||||||||||||||||||| |  ||| ||||| | |||||||||    
T  26804105 aaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgattttataaactttgacaaaaactta 26804034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 31902867 - 31902784
Alignment:
Q  198 cccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||||||| ||| |||| | |||| ||||||||||||  ||||  |||||||| |||||||||| |||| |||||| ||||    
T  31902867 cccggggcactttttaagcaattcaaaataagaaattattccttaagaaagtcaaatatttcaattttcaatacattgactaca 31902784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 44452153 - 44452086
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||| | ||||| |||||||| |||||||||||||| |  |||||  |||||||||||||||||    
T  44452153 cactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgca 44452086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 46726109 - 46726223
Alignment:
Q  182 cttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||| ||||||| ||||||||| |||||||| || || ||||||| | ||| |||| |||||| ||||||||  || ||| || ||||||||||| ||||    
T  46726109 cttgttaacgagtgcccccggg-cactctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattaca 46726207  T
Q  282 tagacttttataaaaa 297  Q
    |||  ||| |||||||    
T  46726208 tagtttttcataaaaa 46726223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 47405344 - 47405245
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| || ||||| ||| || ||||||||  ||||| | |||||| | ||||||||| |||||||||| | |||| ||||| | |||||||||    
T  47405344 gggcactctttaaggattcctaataaataaattattcattaaaaaggtcaaaaacttcaatttctaatgcattgatttcataaactttgacaaaaactta 47405245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 19620004 - 19620054
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    |||||||||||||||| |||||| | ||||||  |||||||||||||||||    
T  19620004 aaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgca 19620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 36061638 - 36061537
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaat 278  Q
    ||||||||||||||| |||||||   |||| ||| || |||| |||  |||||||||||  ||||| |||||||| | | | ||||||||||||||||||    
T  36061638 ggtcttgctaacgagtgcccccgaaacact-tttaaggattctaaagcaagaaattatttattaaaaaagtcaaatactactatttccaatgcattgaat 36061540  T
Q  279 aca 281  Q
    |||    
T  36061539 aca 36061537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 6388064 - 6387995
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||||||| || ||||  ||| ||||||||||| |||||| |||||||| | ||||||||||||| ||||    
T  6388064 cactctttaaggattcataataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatacatt 6387995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 7596261 - 7596180
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaaga-agtcaaacatttcaatttccaatgcattgaatacat 282  Q
    ||||||||||| ||||||  |||  |||||||||||   |||| | ||||||| |||||||||||||||||||||| |||||    
T  7596261 gggcactctttaagcattttaaaagaagaaattatttcataaaaagagtcaaaaatttcaatttccaatgcattgattacat 7596180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 27766825 - 27766776
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaatt 226  Q
    ||||||||| ||||||| |||||| ||||||||||| ||||||| |||||    
T  27766825 agggtcttgttaacgagtgcccccagggcactctttaagcattctaaatt 27766776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 36827555 - 36827657
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 276  Q
    ||||||| ||||| ||| |||||||||||||||||| | | |||| || |||| |||||||  ||||| |||||  | ||||  ||||||||| ||||||    
T  36827555 agggtctcgctaatgagtgcccccggggcactctttaaactttccgaaataagcaattattcattaaaaaagtc--atattttgatttccaattcattga 36827652  T
Q  277 ataca 281  Q
    |||||    
T  36827653 ataca 36827657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 37138715 - 37138662
Alignment:
Q  222 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    |||||||||||||||| |||||| |||| ||| ||||  |||||||||||||||    
T  37138715 aaattaagaaattattttttaaaaaagttaaatatttttatttccaatgcattg 37138662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 8327906 - 8327838
Alignment:
Q  239 tttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaacattt 307  Q
    |||||| |||||||| | ||||||||||||| || | |||||| | |||||||||||| |||| |||||    
T  8327906 tttaaaaaagtcaaagacttcaatttccaatacaataaatacacaaacttttataaaatcttaccattt 8327838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 14651523 - 14651463
Alignment:
Q  177 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattatt 237  Q
    ||||||||||||||||| |||||||||||||| ||| || || | ||||| || |||||||    
T  14651523 agggtcttgctaacgagtgcccccggggcactttttaagtatcctaaatttagtaattatt 14651463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 38452188 - 38452236
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattg 275  Q
    ||||||||||| | |||| |||||||| |||||||||||| ||||||||    
T  38452188 aagaaattattttataaaaaagtcaaatatttcaatttccgatgcattg 38452236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 42890345 - 42890297
Alignment:
Q  234 tattatttaaagaagtcaaacatttcaatttccaatgcattgaatacat 282  Q
    |||| |||||| |||||||||||||| ||||||||| |||||| |||||    
T  42890345 tattttttaaaaaagtcaaacatttcgatttccaatacattgattacat 42890297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 43492314 - 43492246
Alignment:
Q  204 gcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgca 272  Q
    ||||||||| ||||||| |||||||| ||||||| |||| | | ||||||  || ||||||||||||||    
T  43492314 gcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgca 43492246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 25028809 - 25028676
Alignment:
Q  205 cactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaacttaaca 304  Q
    |||||||| | ||||| ||||||  |||||||| |||||| |||||||||| |||||||| |||||||||||||||| |   ||||||||||| |||| |    
T  25028809 cactctttaaacattcaaaattagaaaattattctttaaaaaagtcaaacagttcaattttcaatgcattgaatacacacgtttttataaaaagttaaaa 25028710  T
Q  305 ttt----cccttaaagagtgccttgggggcactc 334  Q
    |||    | ||||||||||||||||  |||||||    
T  25028709 tttaagactcttaaagagtgccttgcaggcactc 25028676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 30509284 - 30509406
Alignment:
Q  178 gggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 277  Q
    |||||||| ||||||| | | ||||  |||||||| ||||| ||||| |||| ||||||| |||||| || ||||||||||| |||| |||||||||||     
T  30509284 gggtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgat 30509383  T
Q  278 tacatagacttttataaaaactt 300  Q
    |||||  | ||||||||| ||||    
T  30509384 tacatgtatttttataaatactt 30509406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 22020610 - 22020536
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||||||||||| |||||||| | | |||||||||||||||||| | |||| | ||| |||||||||||    
T  22020610 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 22020536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 22055107 - 22055033
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    |||||||||||||||||| |||||||| | | |||||||||||||||||| | |||| | ||| |||||||||||    
T  22055107 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 22055033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 29407968 - 29408094
Alignment:
Q  175 ttagggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcatt 274  Q
    ||||||||||| ||||||| |||    ||||||||||| || ||||| ||| ||||||||||| |||||| |||||||| | | ||||||| ||||||||    
T  29407968 ttagggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaatttctaatgcatt 29408067  T
Q  275 gaatacatagacttttataaaaactta 301  Q
    || | |||| | ||| | |||||||||    
T  29408068 gatttcataaattttgacaaaaactta 29408094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 34185163 - 34185098
Alignment:
Q  179 ggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaa 244  Q
    ||||||| |||| || ||| |||||||||||||| |||||||| ||| ||||||||||| ||||||    
T  34185163 ggtcttgttaacaagtgcctccggggcactctttaagcattcctaataaagaaattattctttaaa 34185098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 6586532 - 6586436
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    |||||||||||| ||||| | |||||| ||||||| | ||| || |||||| | | |||||||||| |||||||||| ||||| | ||| |||||||    
T  6586532 ggggcactctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttccgatgcattgaaaacataaattttcataaaaa 6586436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 11675630 - 11675704
Alignment:
Q  203 ggcactctttgagcattccaaattaagaaattattatt---taaagaagtcaaacatttcaatttccaatgcatt 274  Q
    |||||||||| ||||||| |||  ||||||||||||||   |||| |||||||| |||||||||||||| |||||    
T  11675630 ggcactctttaagcattctaaaagaagaaattattattcattaaaaaagtcaaaaatttcaatttccaacgcatt 11675704  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 24797405 - 24797504
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| |  ||||| ||| ||||||||||| |||||| |||||||| | |  ||||||||||| ||||| | |||| ||||| | |||||||||    
T  24797405 gggcactctttaatgattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgtattgatttcataaactttgacaaaaactta 24797504  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 31702857 - 31702759
Alignment:
Q  199 ccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    |||||||||||||| || ||| ||||  ||||||||||| | |||| |||| ||  |||| |||||| |||||||||| |||| | | |||||||||||    
T  31702857 ccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgattacacatatttttataaaaa 31702759  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 7421676 - 7421743
Alignment:
Q  214 agcattccaaattaagaaatta-ttatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||||||||| || ||||| ||||||||| |||||||| ||| |||||| ||||||||| ||||||    
T  7421676 agcattccaaatttagtaattatttatttaaa-aagtcaaatattacaattttcaatgcatttaataca 7421743  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 12132518 - 12132598
Alignment:
Q  201 ggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    |||||||||||  ||||||| | |||| |||| |||| |||||| | |||||| | |||||||| ||||||||| ||||||    
T  12132518 ggggcactcttgaagcattctatattatgaaaatattctttaaaaacgtcaaataattcaattttcaatgcatttaataca 12132598  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 219188 - 219277
Alignment:
Q  208 tctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaa 297  Q
    ||||| ||||||  |||||| ||||||||| |||| | |||||||| | |||||||||||||||||| |||||||| | |||||||||||    
T  219188 tctttaagcattttaaattaggaaattattctttacaaaagtcaaatagttcaatttccaatgcattaaatacatatatttttataaaaa 219277  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 26693 - 26772
Alignment:
Q  202 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaataca 281  Q
    ||||||||||| ||||| | |||||||| ||||||||||| || | ||||||  ||||||||| ||||||| ||| ||||    
T  26693 gggcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattttcaatgcactgattaca 26772  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 48796 - 48870
Alignment:
Q  227 aagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 301  Q
    ||||||||||| |||||| || ||||| | |||||||| ||||||||||| | |||| ||||| | |||||||||    
T  48796 aagaaattattctttaaaaaaatcaaaaacttcaattttcaatgcattgatttcataaactttaacaaaaactta 48870  T

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Target: scaffold0633 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 5102 - 5037
Alignment:
Q  218 ttccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacata 283  Q
    |||| |||||| ||||||||  ||||| ||||  ||||||||||||||| ||||||||||| ||||    
T  5102 ttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcata 5037  T

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