View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319_low_8 (Length: 445)

Name: NF8319_low_8
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319_low_8
NF8319_low_8
[»] chr1 (5 HSPs)
chr1 (14-431)||(29452402-29452822)
chr1 (148-431)||(29467013-29467296)
chr1 (137-431)||(29423892-29424186)
chr1 (146-390)||(29442545-29442789)
chr1 (50-100)||(29424189-29424238)
[»] chr2 (23 HSPs)
chr2 (162-431)||(14550998-14551266)
chr2 (148-299)||(10336621-10336772)
chr2 (214-341)||(8572755-8572882)
chr2 (195-315)||(10372676-10372796)
chr2 (217-322)||(9292715-9292820)
chr2 (195-310)||(9321790-9321905)
chr2 (214-315)||(9316816-9316920)
chr2 (214-298)||(9283428-9283512)
chr2 (217-317)||(10353937-10354037)
chr2 (195-290)||(9329418-9329513)
chr2 (214-289)||(12011847-12011922)
chr2 (195-292)||(10348620-10348717)
chr2 (195-270)||(9060333-9060408)
chr2 (194-299)||(9275333-9275438)
chr2 (225-290)||(9357935-9358000)
chr2 (216-289)||(12018170-12018243)
chr2 (214-270)||(9365434-9365490)
chr2 (216-299)||(7114901-7114984)
chr2 (183-289)||(7612716-7612822)
chr2 (214-300)||(12005419-12005505)
chr2 (214-284)||(11986779-11986849)
chr2 (182-289)||(8578747-8578854)
chr2 (183-282)||(17565337-17565436)
[»] chr8 (1 HSPs)
chr8 (214-365)||(41965976-41966130)
[»] scaffold0667 (1 HSPs)
scaffold0667 (195-318)||(5250-5373)
[»] chr3 (1 HSPs)
chr3 (158-338)||(37463293-37463473)
[»] chr4 (1 HSPs)
chr4 (214-317)||(26575671-26575774)
[»] chr5 (1 HSPs)
chr5 (204-284)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 29452402 - 29452822
Alignment:
Q  14 aagaatgaaagatgggttgcattttgggtggtagtacagtacaaagaaaggacgaaatgaaaaaaccctaaaccctagctacaaccttccttccttcctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29452402 aagaatgaaagatgggttgcattttgggtggtagtacagtacaaagaaaggacgaaatgaaaacaccctaaaccctagctacaaccttccttccttcctt 29452501  T
Q  114 ----ttcctnnnnnnnncccttccttccttccaagctccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatcc 209  Q
        |||||        |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  29452502 ccttttcctaaaaaaa-cccttccttccttccaagctccaatggcggatcttccgccggagatacttaccggtatcctctctctgttaccggtacaatcc 29452600  T
Q  210 ctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaa 309  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452601 ctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaa 29452700  T
Q  310 ttcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaacaacat 409  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452701 tccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaacaacat 29452800  T
Q  410 ctctatgttcagttcatgtaac 431  Q
    |||| |||||||||||||||||    
T  29452801 ctctctgttcagttcatgtaac 29452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 148 - 431
Target Start/End: Original strand, 29467013 - 29467296
Alignment:
Q  148 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 247  Q
    ||||||| |||||||| || || ||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29467013 caatggctgatcttcctccggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatc 29467112  T
Q  248 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgat 347  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||    
T  29467113 cctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgat 29467212  T
Q  348 ttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaacaacatctctatgttcagttcatgtaac 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||| |||||||||||    
T  29467213 ttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaacttcatctctctgttcggttcatgtaac 29467296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 137 - 431
Target Start/End: Complemental strand, 29424186 - 29423892
Alignment:
Q  137 cttccaagctccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaa 236  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29424186 cttccaagctccaatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaa 29424087  T
Q  237 tcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctacc 336  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  29424086 tcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttctacc 29423987  T
Q  337 aaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaacaacatctctatgttcagttcatgtaac 431  Q
    ||||||||||||||||||||||||| |||  | |||||||||||| ||||||||||  | ||||||||  ||||||| || || | |||||||||    
T  29423986 aaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctttcaaaggctccaacaacttcatctctctggtcggatcatgtaac 29423892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 146 - 390
Target Start/End: Original strand, 29442545 - 29442789
Alignment:
Q  146 tccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||    
T  29442545 tccaatggtggatcttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaa 29442644  T
Q  246 tccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacg 345  Q
    |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| | |    
T  29442645 tccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaag 29442744  T
Q  346 atttctctaacctaaccacccgcattaaactcaatcttcctttca 390  Q
    |||||||||||||||||||| || ||||||||||  |||||||||    
T  29442745 atttctctaacctaaccaccggcgttaaactcaacattcctttca 29442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 29424238 - 29424189
Alignment:
Q  50 cagtacaaagaaaggacgaaatgaaaaaaccctaaaccctagctacaacct 100  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||| |||||    
T  29424238 cagtacaaagaaaggaagaaatga-aaaactctaaaccctagctagaacct 29424189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 162 - 431
Target Start/End: Complemental strand, 14551266 - 14550998
Alignment:
Q  162 ccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctc 261  Q
    ||||| |||||||||||| | ||||||||||||||||||  |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |    
T  14551266 ccgccggagatactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattccc 14551167  T
Q  262 acaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 361  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| ||   | |||||||||||||||||||||||||||||||    
T  14551166 acaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaac 14551068  T
Q  362 cacccgcattaaactcaatcttcctttcaaactccccaacaacaacatctctatgttcagttcatgtaac 431  Q
    |||||||||||||||||||||||||||| ||  |  |||||||  ||||||| || || |||||||||||    
T  14551067 cacccgcattaaactcaatcttcctttcgaaggcttcaacaacttcatctctctgctcggttcatgtaac 14550998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 299
Target Start/End: Complemental strand, 10336772 - 10336621
Alignment:
Q  148 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 247  Q
    ||||||||||||||||||| || || ||| |||  ||| |||| |  ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||    
T  10336772 caatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatc 10336673  T
Q  248 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 299  Q
    | |||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  10336672 cttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 8572755 - 8572882
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 313  Q
    |||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||  |    
T  8572755 tccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcat 8572854  T
Q  314 tcgacacaactctgttttctaccaaatc 341  Q
    ||||| |||||  | | |||||||||||    
T  8572855 tcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 195 - 315
Target Start/End: Complemental strand, 10372796 - 10372676
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 294  Q
    ||||||||| |||| ||  |||||||||| ||||| ||||||||| || ||||  |||||||||| ||||| |||||||| |||||||||||||||||||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  295 tcaatcgttccttaattcttc 315  Q
    ||||||| |||||||| ||||    
T  10372696 tcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 9292820 - 9292715
Alignment:
Q  217 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 316  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||  || ||||||||| ||||||||||||| || |||||||| |||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  317 acacaa 322  Q
    ||||||    
T  9292720 acacaa 9292715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 9321905 - 9321790
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 294  Q
    ||||||||| |||| ||  ||| |||||| ||||| || ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  9321905 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccc 9321806  T
Q  295 tcaatcgttccttaat 310  Q
    ||| ||| ||||||||    
T  9321805 tcagtcgatccttaat 9321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 9316920 - 9316816
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa---aattccctcaatcgttccttaat 310  Q
    |||||||||| ||||| |||||||||||| ||||  |||| |||||||||||||||||||| ||||||||| ||   |||||||||||||| ||||||||    
T  9316920 tccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaat 9316821  T
Q  311 tcttc 315  Q
     ||||    
T  9316820 ccttc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 9283428 - 9283512
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaa 298  Q
    |||||||||| ||||| || |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| ||| |||||||||    
T  9283428 tccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 10354037 - 10353937
Alignment:
Q  217 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 316  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||  |||| |||||||| |||||||||  |||||||| |||||  ||||||||||||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  317 a 317  Q
    |    
T  10353937 a 10353937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 9329513 - 9329418
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 290  Q
    ||||||||| |||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||  || ||||||||| |||||    
T  9329513 ttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 12011847 - 12011922
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 289  Q
    |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| ||||    
T  12011847 tccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 10348717 - 10348620
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 292  Q
    ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 270  Q
    |||||||| ||||| ||  |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  194 gttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattcc 293  Q
    |||||| |||||||| ||  || ||||||| |||| ||||||||||||| ||||  | || ||||| |||||||||||||| ||||| ||| ||||||||    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  294 ctcaat 299  Q
    ||||||    
T  9275338 ctcaat 9275333  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 9358000 - 9357935
Alignment:
Q  225 tcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 290  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||| |||||    
T  9358000 tcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 12018170 - 12018243
Alignment:
Q  216 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 289  Q
    |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||| ||||    
T  12018170 cgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 9365490 - 9365434
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 270  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  9365490 tccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttca 9365434  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 7114901 - 7114984
Alignment:
Q  216 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 299  Q
    |||||||| ||||| |||||||||||| ||||| |||||||||| ||||| |||||||| ||||| ||  |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 7612822 - 7612716
Alignment:
Q  183 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 282  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||  || ||||| ||| ||||| |||| ||||| ||||||||||  || |||||||    
T  7612822 atcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacc 7612723  T
Q  283 tccaaaa 289  Q
    || ||||    
T  7612722 tcaaaaa 7612716  T

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Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 12005419 - 12005505
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatc 300  Q
    |||||||||| ||||| ||| |||| ||| ||||| ||||||||||||||||||||| ||| ||||| ||  ||||||| |||||||    
T  12005419 tccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 11986779 - 11986849
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 284  Q
    |||||||||| ||||| ||| |||| ||| ||||| |||| |||||||||||||||| ||| |||||||||    
T  11986779 tccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctc 11986849  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 8578747 - 8578854
Alignment:
Q  182 tatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcac 281  Q
    ||||||||| |  |||||||||||||||||  |||||||||| ||||  || |||||||||| |||| | || ||||| |||| ||||| ||||| | ||    
T  8578747 tatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 8578846  T
Q  282 ctccaaaa 289  Q
    ||| ||||    
T  8578847 ctcaaaaa 8578854  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 282
Target Start/End: Original strand, 17565337 - 17565436
Alignment:
Q  183 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 282  Q
    ||||||||||  ||||| |||||||||||| ||||| |||| ||||| || ||||||||| |||   |||| ||||| || ||||||| ||| |||||||    
T  17565337 atcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 41965976 - 41966130
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 313  Q
    |||||||||| |||||||| |||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||| ||||||||||| |||||||| ||    
T  41965976 tccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcct 41966075  T
Q  314 tcgacacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 365  Q
    ||||| |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  41966076 tcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 41966130  T

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Target: scaffold0667 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 5373 - 5250
Alignment:
Q  195 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 294  Q
    ||||||||| |||| ||  |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||||||||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  295 tcaatcgttccttaattcttcgac 318  Q
    ||||| | ||||| || |||||||    
T  5273 tcaatagatccttcatccttcgac 5250  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 338
Target Start/End: Complemental strand, 37463473 - 37463293
Alignment:
Q  158 tcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgat 257  Q
    ||||||||| || |||||| |||  |||||||| |  ||||| ||| |||| ||  |||||||||| ||||| |||||||||||| ||||  ||||||||    
T  37463473 tcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgat 37463374  T
Q  258 tctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaa 338  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||||  ||| ||||  ||||| ||||||| | | ||||||||    
T  37463373 tctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaa 37463293  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 26575774 - 26575671
Alignment:
Q  214 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 313  Q
    |||||||||| ||||| |||||||||||| ||| | ||||||||||  |||| |||||||| |||||||||  |||||||| |||||| |||||||| ||    
T  26575774 tccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcct 26575675  T
Q  314 tcga 317  Q
    ||||    
T  26575674 tcga 26575671  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  204 caatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 284  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||  |||||||||| ||||||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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