View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319_low_9 (Length: 405)
Name: NF8319_low_9
Description: NF8319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 2311340 - 2310964
Alignment:
| Q |
17 |
acttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttctcatagaattccacnnnnnnnccttttg |
116 |
Q |
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| T |
2311340 |
acttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttgtcatagaattccactttttttccttttg |
2311241 |
T |
|
| Q |
117 |
caaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacatatttgaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311240 |
aaaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacatatttgaaca |
2311141 |
T |
|
| Q |
217 |
attctagtc-aggnnnnnnncaatataaatgatggaatttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaaaccgaatc |
315 |
Q |
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| T |
2311140 |
atgctagtcaagaaaaaaaaccatataaatgatggtgtttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaaaccgaatc |
2311041 |
T |
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| Q |
316 |
gaacatttcaactgtttgaagtgtgaaccgaaacggtttgtggttcggtttgagcaatatatttagatttcattttctt |
394 |
Q |
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| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2311040 |
ggacatttcaaccgtttgatgtgtgaaccgaaacggtttgtggttcggtttgagca--atatttagatttcattttctt |
2310964 |
T |
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