View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8320_high_1 (Length: 412)
Name: NF8320_high_1
Description: NF8320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8320_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 52804186 - 52804581
Alignment:
| Q |
14 |
acaataatctcttggtcttggattagtacatcattcaaagaagagatcaacgagaatttgacaagaaatcaaacatatcctgaaaaacatgattcgatta |
113 |
Q |
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| T |
52804186 |
acaataatctcttggtcttggattagtacatcattcaaagaagagatcaacgagaatttgacaagaaatcaaacatatcctgaaaaacatgattcgatta |
52804285 |
T |
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| Q |
114 |
cgacactcttgaaatatggttggactgatgcttacgacattctttggccgttga---aaattatcaattttcttgtattgcnnnnnnnnttatgtccatc |
210 |
Q |
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| T |
52804286 |
cgacactcttgaaatatggttggactgatacttacgacactctttggccgttgatgaaaattatcaattttcttgtattgcaaaaaaaattatgtccatc |
52804385 |
T |
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| Q |
211 |
ttttttatggaacattgttcttatgaacatcacatacatggataccgtttagtaaatagcaatacactcaaaataattgttaatgtgacgaagagagaaa |
310 |
Q |
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| T |
52804386 |
ttttttatggaacattgttcttatgaacatcacatacatgaataccgtttagtaaatagcaatacactcaaaataattgttaatgtgacgaagagagaaa |
52804485 |
T |
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| Q |
311 |
gacgttaattttaaagaaacacaaatgtatgggaatgtattttaataag-tgttcgacaacttttagttgtcaaaataagtttttgatgtccatct |
405 |
Q |
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| T |
52804486 |
gacgttaattttaaagaaacacaaatgtatgggaatgtattttaataagttgttcgacaacttttagttgtcaaaataagttttttatgtccatct |
52804581 |
T |
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