View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8320_low_2 (Length: 409)
Name: NF8320_low_2
Description: NF8320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8320_low_2 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 6555578 - 6555957
Alignment:
| Q |
14 |
gagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6555578 |
gagaagaaatggctgaaagtaacctgttggttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaaggtagtagatt |
6555677 |
T |
|
| Q |
114 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactccct |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555678 |
tccaaattggctaaggggttgtcatttacccaacttagtatctcttgaacttaagggttgtaagttatgttcctgtttgccaacacttggacaactccct |
6555777 |
T |
|
| Q |
214 |
tctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
313 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555778 |
tctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
6555877 |
T |
|
| Q |
314 |
aatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555878 |
aatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
6555957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 6734849 - 6734473
Alignment:
| Q |
14 |
gagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
113 |
Q |
| |
|
|||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734849 |
gagaagaaatggatgaaagaagtgtgttagtcttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
6734750 |
T |
|
| Q |
114 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactccct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
6734749 |
tccaaattggctaaggggtagtcatttacgcaacttagtatctcttgaactgaatggttgtag---atgttcctgtttgccaatacttggacaactccct |
6734653 |
T |
|
| Q |
214 |
tctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
313 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734652 |
tctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
6734553 |
T |
|
| Q |
314 |
aatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
6734552 |
aatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctttgcttatagagctttctata |
6734473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 6528012 - 6528391
Alignment:
| Q |
14 |
gagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6528012 |
gagaagaaatggctgaaagcaacctgttagtcttggaggctatacaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
6528111 |
T |
|
| Q |
114 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactccct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
6528112 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttcaactgaatggttgtgggttatgttcctgtttgccaccccttggacaactccct |
6528211 |
T |
|
| Q |
214 |
tctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
313 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6528212 |
tctcttaagaaactttccgtttatgattgtgaaggaataaagatcattgatgaagatttttatgacaataattcaacaattgttccattcaagtcccttc |
6528311 |
T |
|
| Q |
314 |
aatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
||| || || ||||| | ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
6528312 |
aattttcgatatttgagaatatggtgaactgggagaaatggatatgtctaaggtttcctttgcttaaagagctttctata |
6528391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 6521272 - 6521645
Alignment:
| Q |
14 |
gagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6521272 |
gagaagaaatggctgaaagcaacctgttagtcttggaggctatacaatcaaatagcaacttgaagaagctcaacatcacacgctacaaaggtagtagatt |
6521371 |
T |
|
| Q |
114 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactccct |
213 |
Q |
| |
|
||||||||||| | | | |||||||||||||||||||||||||| |||| |||| |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
6521372 |
tccaaattggc---gtgattgtcatttacccaacttagtatctcttcaactgaaggattgtag---atgttcctgtttgccaacacttggacaactccct |
6521465 |
T |
|
| Q |
214 |
tctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
313 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521466 |
tctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagatttttatggcaataattcaacaattgttccattcaagtcccttc |
6521565 |
T |
|
| Q |
314 |
aatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521566 |
aatatttgagatttcaggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
6521645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 387
Target Start/End: Complemental strand, 6946138 - 6945797
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
148 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| | |||| |
|
|
| T |
6946138 |
gaggctcttcaaccaaagagcaacttgaagaagctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaact |
6946039 |
T |
|
| Q |
149 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
248 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||| ||| |||| ||||| || |||| ||||| ||||| |||| |||| | ||| | || |
|
|
| T |
6946038 |
tagtatctcttaaactgaaggactgtgtactatgttcccatttaccaatgcttgggcagttcccctctctcaaggagatttctatttcaaactgtaacgg |
6945939 |
T |
|
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
348 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| | |||||| |||||| |||| |||||||||| ||||| ||| | | |||||||||| |||||| |
|
|
| T |
6945938 |
aataaagatcatcggcgaagagttttacaacaatagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggag |
6945839 |
T |
|
| Q |
349 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctt |
387 |
Q |
| |
|
|||||| | || || |||||||||| |||||||||||||| |
|
|
| T |
6945838 |
gaatggttttgtcctgaaaggtttcctttgcttaaagagctt |
6945797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 6781093 - 6781190
Alignment:
| Q |
296 |
ttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
6781093 |
ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctttgcttatagagctttctata |
6781190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 393
Target Start/End: Complemental strand, 8453530 - 8453155
Alignment:
| Q |
21 |
aatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaat |
120 |
Q |
| |
|
|||||||||||| || ||| ||| ||||||||||| |||||||||| |||||||||| ||| | |||| || | |||||||||| ||| ||||||||| |
|
|
| T |
8453530 |
aatggctgaaagcaatgtgtcagtcttggaggctctccaaccaaatagaaacttgaagaggcttaccatctcaaaatacaaaggtaatagctttccaaat |
8453431 |
T |
|
| Q |
121 |
tggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctctta |
220 |
Q |
| |
|
||| |||||||| ||||||||| ||||||||||||||||| || || |||||| |||||||| | |||||| ||||||| |||||| | ||| | |
|
|
| T |
8453430 |
tggataaggggttatcatttaccaaacttagtatctcttaatctacagttttgtggattatgttctttgttgccaccacttgggacactcccctttctca |
8453331 |
T |
|
| Q |
221 |
aggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatattt |
320 |
Q |
| |
|
|| ||||| |||| || ||||| |||||||||||||| | |||||||||||| | || || ||||| || ||| | |||| ||| |||||| ||| |
|
|
| T |
8453330 |
agatgctttctatttcagactgtgatggaataaagatcataggtgaagagttttacgacagtagttcaataaatgtgctgttcaggtctcttgaagtttt |
8453231 |
T |
|
| Q |
321 |
gagatttgcggatatggtcaactgggaggaatggatatg---tgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
|| ||||| | | ||| ||| |||||||||||| | || || | |||||||| |||||||||||||||||||| |
|
|
| T |
8453230 |
gaaatttgagaagatgaacaattgggaggaatggttgtgtcttgaagggtttcctttgcttaaagagctttatata |
8453155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 393
Target Start/End: Complemental strand, 8470427 - 8470080
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
148 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | ||| ||||| |||| |||||||||| || |||||||| ||| |||||||| |||||||||| |||| |
|
|
| T |
8470427 |
gaggctcttcaaccaaataacaacttgaataggctttacatctcacaatacaaaggtaaaagctttccaaagtggataaggggttgtcatttaccaaact |
8470328 |
T |
|
| Q |
149 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
248 |
Q |
| |
|
|||||||||||||| | || | ||||| | |||| | ||||||| |||||||||| ||||| | ||| ||||| ||| | || | ||| ||| | || |
|
|
| T |
8470327 |
tagtatctcttaaattacagagctgtggatcatgtctccatttgccaccacttggacagctcccgtgtctcaaggagcttgctatctgtgactgtcatgg |
8470228 |
T |
|
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
348 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||| |||||||||| |||||| ||| |||||||||| ||||| ||||| | | ||| || |||||| |
|
|
| T |
8470227 |
aataaagataattggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggag |
8470128 |
T |
|
| Q |
349 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
|||||| | || || | |||||||| ||||||||||||||| |||| |
|
|
| T |
8470127 |
gaatggttgtgtcttgaagggtttcctttgcttaaagagctttctata |
8470080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 6481145 - 6481414
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
||||||||||| |||||||||| | ||| |||| ||| | |||| |||| || | ||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6481145 |
ttggaggctcttcaaccaaatagaagcttaaagaggcttagcatctcacaatatagaggtaatagatttccaaattggataaggggttgtcatttaccca |
6481244 |
T |
|
| Q |
146 |
acttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtga |
245 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||| ||||||| ||||||| |||||||| ||||| | ||| ||||| |||| | ||| | |
|
|
| T |
6481245 |
acttagtatctcttcaaatgcgtcactgtggattatgttctcatttgccaccacttgggcaactcccctctctcagggagctttctatttcaaactgtaa |
6481344 |
T |
|
| Q |
246 |
aggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
315 |
Q |
| |
|
| ||||||||||||| | ||||||||| ||||| |||||||||| ||||| | |||||| ||| |||||| |
|
|
| T |
6481345 |
aagaataaagatcatcggtgaagagttatatggaaataattcaaaaattgatgcattcaggtctcttgaa |
6481414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 6840067 - 6840182
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
148 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
6840067 |
gaggctcttcaaccaaatagcaacttggagaagctcaacataaaacactacaaaggtaatagctttccaagttggctaagggcttgtcatttatccaact |
6840166 |
T |
|
| Q |
149 |
tagtatctcttaaact |
164 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
6840167 |
tagtatctcttcaact |
6840182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 393
Target Start/End: Original strand, 6795783 - 6796124
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
148 |
Q |
| |
|
|||||||| |||| |||||||||||||| | ||| | |||| || | |||||||||| | | |||||||||||| |||| ||||||| |||||| |
|
|
| T |
6795783 |
gaggctcttcaaccgaatagcaacttgaaaaggcttaccatctcagaatacaaaggtaatggctttccaaattggataag------tcatttatccaact |
6795876 |
T |
|
| Q |
149 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
248 |
Q |
| |
|
||||||||||| |||| | | | ||| ||||||||| ||||||| |||| || || ||||| ||||| ||||| |||||||||| |||||| || |
|
|
| T |
6795877 |
tagtatctcttcaactgcaagactatggattatgttccgatttgccagcactagggcagctcccctctctcaaggacctttccatttcaagatgtgacgg |
6795976 |
T |
|
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgcggatatggtcaactgggag |
348 |
Q |
| |
|
||||| |||||||| |||||| ||||| ||||| |||||||| |||| | |||| ||||||||| ||||| ||||| ||| |||| ||| |||||| |
|
|
| T |
6795977 |
aataatgatcattggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggag |
6796076 |
T |
|
| Q |
349 |
gaatggatatg---tgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
|||||| | || || | |||||||| |||||||||||||||||||| |
|
|
| T |
6796077 |
gaatggttttgtcttgaagggtttcctttgcttaaagagctttatata |
6796124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 8570114 - 8570383
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||| ||||||| ||||||| || ||||| |||||||||||| ||| |||| || |||||||| |
|
|
| T |
8570114 |
ttggatgctcttcaaccaaatagcaacttgaagaggctcaccatcacatactacaatggcagtagctttccaaattggttaatgggttttcttttaccca |
8570213 |
T |
|
| Q |
146 |
acttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtga |
245 |
Q |
| |
|
||||||||||||||||||| | ||| | ||||||||| ||||| ||||||| || ||||| | ||| ||||| ||||| |||| | ||| | |
|
|
| T |
8570214 |
acttagtatctcttaaactacaccagtgtagattatgttccatgttgccgccacttgggcagctcccctatctcaaggagctttctatttcatattgtta |
8570313 |
T |
|
| Q |
246 |
aggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
315 |
Q |
| |
|
|| ||| | ||||||| |||||||||| ||||||| |||||||||| |||| |||| |||||||||| |
|
|
| T |
8570314 |
tggtatagaaatcattggcaaagagttttacggcaatagttcaacaattattccgttcaggtcccttgaa |
8570383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 315
Target Start/End: Complemental strand, 7586738 - 7586472
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
148 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| | |||| ||||||||||||||| ||| ||| |||||||| | |||||| || |||||||||||| |
|
|
| T |
7586738 |
gaggctcttcaaccaaatagcagcttgaagaggcttatcatctcacactacaaaggtaataggtttgcaaattggatgaggggttgtgatttacccaact |
7586639 |
T |
|
| Q |
149 |
tagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaagg |
248 |
Q |
| |
|
|||| || ||| ||| || |||| ||||||||| |||||| |||||||||||||||||| ||| || || |||| |||| | ||||| |
|
|
| T |
7586638 |
tagtttcaattagactaaatctctgtgctttatgttccgagttgccaccacttggacaactcccttgtctcaaagagatttcaatttcaggctgtgataa |
7586539 |
T |
|
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
315 |
Q |
| |
|
||||| |||||| | |||| ||||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
7586538 |
aataaggatcatagggaaagaattttatggcaataattccacaaatgttccattcagatcccttgaa |
7586472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 6729885 - 6730003
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6729885 |
ttggaggctctacaaccaaatagaaacttgaagtgacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6729984 |
T |
|
| Q |
146 |
acttagtatctcttaaact |
164 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6729985 |
acttagtatctcttgaact |
6730003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 6449957 - 6450075
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6449957 |
ttggaggctctacaaccaaatagaaacctaaagagacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6450056 |
T |
|
| Q |
146 |
acttagtatctcttaaact |
164 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6450057 |
acttagtatctcttgaact |
6450075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 5279381 - 5279250
Alignment:
| Q |
197 |
cacttggacaactcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgt |
296 |
Q |
| |
|
||||||| || || || ||||||||||| ||||| |||| |||||||| |||||| |||| || | |||||||||||||||| |||||||| ||| ||| |
|
|
| T |
5279381 |
cacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagttttatggctataattcatcaactgt |
5279282 |
T |
|
| Q |
297 |
tccattcaagtcccttgaatatttgagatttg |
328 |
Q |
| |
|
||||||| ||||||||| |||||| ||||| |
|
|
| T |
5279281 |
tccattcgcttcccttgaaaatttgaaatttg |
5279250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 6486191 - 6486270
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaag |
128 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| ||||||||| |
|
|
| T |
6486191 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaag |
6486270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 6932419 - 6932336
Alignment:
| Q |
49 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggt |
132 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| |||||||| |||| |
|
|
| T |
6932419 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaaagggt |
6932336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 302
Target Start/End: Complemental strand, 5262565 - 5262400
Alignment:
| Q |
137 |
atttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcccttctcttaaggaactttccattta |
236 |
Q |
| |
|
|||||| |||||| ||||| ||| |||| || | ||||| || |||||| | |||||| ||||||| | || || |||||||| || ||||| |||| |
|
|
| T |
5262565 |
atttactcaacttggtatcccttgaactgaatagatgtggattttgttcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttc |
5262466 |
T |
|
| Q |
237 |
tgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccatt |
302 |
Q |
| |
|
|||||| | |||||| ||||||| | |||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
5262465 |
agaatgttatggaatagagatcatcggtgaagagttttatggctataattcatcaactgttccatt |
5262400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 8588607 - 8588500
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||| | |||| || | |||||||| | ||| |||||||||||| || |||| |||||||| |
|
|
| T |
8588607 |
ttggaggctcttcaaccaaatagaaacttgaagaggcttaccatctcaaaatacaaaggcaataggtttccaaattggata------agtcgtttaccca |
8588514 |
T |
|
| Q |
146 |
acttagtatctctt |
159 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8588513 |
acttagtatctctt |
8588500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 6486361 - 6486440
Alignment:
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttg |
328 |
Q |
| |
|
|||||||||||| |||||| ||||| | |||||||||||||||| ||||||| | |||||||||| ||||| ||||| |
|
|
| T |
6486361 |
aataaagatcatcagtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttg |
6486440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 6898912 - 6898849
Alignment:
| Q |
95 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctct |
158 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
6898912 |
actacagaggcagtagatttccaaattggcttggggttcatcatttacccaatttagtatctct |
6898849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 6730088 - 6730154
Alignment:
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
315 |
Q |
| |
|
|||||||||||| | ||||||| ||||| |||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
6730088 |
aataaagatcatcggcaaagagttctatggaaataattcaataattgttccattcaggtctcttgaa |
6730154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 8588479 - 8588413
Alignment:
| Q |
249 |
aataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaa |
315 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
8588479 |
aataaagatcattggtgccgacttttacggaaataactcaacaattgttccattcaggtctcttgaa |
8588413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 6141159 - 6141046
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
||||||||||| |||||||||| ||| | | || ||||| ||||| |||||| ||||||||| ||||| |||||||| ||| | |||| |||||| |
|
|
| T |
6141159 |
ttggaggctcttcaaccaaatagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctaccca |
6141060 |
T |
|
| Q |
146 |
acttagtatctctt |
159 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6141059 |
atttagtatctctt |
6141046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 6167764 - 6167651
Alignment:
| Q |
46 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
145 |
Q |
| |
|
||||||||||| |||||||||| || | | || ||||| ||||| |||||| ||||||||| |||||||||||||| ||| | |||| |||||| |
|
|
| T |
6167764 |
ttggaggctcttcaaccaaatagaaatctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatctaccca |
6167665 |
T |
|
| Q |
146 |
acttagtatctctt |
159 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6167664 |
atttagtatctctt |
6167651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 6450158 - 6450215
Alignment:
| Q |
247 |
ggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattca |
304 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
6450158 |
ggaataaagatcatcggcaaagagttctatggaaataattcaataattgttccattca |
6450215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 13271758 - 13271822
Alignment:
| Q |
95 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
159 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||| ||||||| |||||||||||| |
|
|
| T |
13271758 |
actacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctctt |
13271822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 8626 - 9005
Alignment:
| Q |
14 |
gagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatt |
113 |
Q |
| |
|
|||||||||||| |||||| | ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8626 |
gagaagaaatggatgaaagaagtgtgttagtcttggaggctttacaaccaaatagcaacttgaagaagctcaacatcacatgctacaaaggtagtagctt |
8725 |
T |
|
| Q |
114 |
tccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactccct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8726 |
tccaaattggctaaggggtagtcatttaccgaacttagtatctcttcaactgaagggttgtgggttatgttcctgtttgccagcacttggacaactccct |
8825 |
T |
|
| Q |
214 |
tctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttg |
313 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8826 |
tctctcaagaaactttccatttatgactgtgaaggaataaagatcattgatgaagaattttatggcaataattcaacaattgttccattcaagtcccttg |
8925 |
T |
|
| Q |
314 |
aatatttgagatttgcggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926 |
aatatttgagatttgtggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatata |
9005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 321
Target Start/End: Original strand, 6574499 - 6574760
Alignment:
| Q |
60 |
accaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
159 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||| | ||||||| || || || |||||||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6574499 |
accaaatagcaacctacagaggctcaccatcaaatactacaatggcagcagctttccaaattggctaaggtgttctcatttacctaacttagtatctctt |
6574598 |
T |
|
| Q |
160 |
aaacttaagggttgtgggttatgtt-cctgtttgccaacacttggacaactcccttctcttaaggaactttccatttatgaatgtgaaggaataaagatc |
258 |
Q |
| |
|
| || || |||||| || |||| ||||||| || |||||||||| ||||| | ||| ||||| |||| ||||| | ||| | |||||||||||| |
|
|
| T |
6574599 |
atcctgcagaattgtggattttgttccctgttt-ccgccacttggacagctcccatgtctcaaggagcttttcatttcaggttgtaatggaataaagatc |
6574697 |
T |
|
| Q |
259 |
attgatgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttg |
321 |
Q |
| |
|
|| | ||||||||| || ||| || ||||||| | ||||| |||| ||||||||||| |||| |
|
|
| T |
6574698 |
atcggtgaagagttctacggcgattgttcaacattagttccgttcaggtcccttgaatttttg |
6574760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 280
Target Start/End: Complemental strand, 977 - 809
Alignment:
| Q |
112 |
tttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaacttaagggttgtgggttatgttcctgtttgccaacacttggacaactcc |
211 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||| |||| | ||||| ||||||||| ||| ||| ||||||| || || | |
|
|
| T |
977 |
tttccaaattggataacaggttgtcatttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttc |
878 |
T |
|
| Q |
212 |
cttctcttaaggaactttccatttatgaatgtgaaggaataaagatcattgatgaagagttttatggca |
280 |
Q |
| |
|
||||||| ||| | ||||| |||| | ||||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
877 |
cttctctcaagaatctttctatttcatattgtgatggaataaagatcattggtgaagagattcatggca |
809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 35141574 - 35141634
Alignment:
| Q |
95 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatc |
155 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
35141574 |
actacagaggtagtagctttccaaattggcttggggatcatcatttacccaatttagtatc |
35141634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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