View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8320_low_3 (Length: 388)

Name: NF8320_low_3
Description: NF8320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8320_low_3
NF8320_low_3
[»] chr6 (4 HSPs)
chr6 (119-372)||(6785678-6785931)
chr6 (1-95)||(6785589-6785683)
chr6 (223-369)||(6802940-6803086)
chr6 (258-363)||(12837547-12837652)
[»] chr8 (3 HSPs)
chr8 (229-369)||(7950498-7950638)
chr8 (229-369)||(7947080-7947220)
chr8 (211-369)||(7941529-7941687)
[»] chr3 (6 HSPs)
chr3 (201-368)||(25481743-25481910)
chr3 (259-333)||(30056008-30056082)
chr3 (271-324)||(12123934-12123987)
chr3 (272-324)||(12128098-12128150)
chr3 (261-333)||(30157267-30157339)
chr3 (271-334)||(12110253-12110316)
[»] chr7 (2 HSPs)
chr7 (268-331)||(15129277-15129340)
chr7 (263-324)||(20472218-20472279)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 119 - 372
Target Start/End: Original strand, 6785678 - 6785931
Alignment:
Q  119 gtttatttaagtattaggttcatcatgtcatgcatgcatgacttttatttttgcatatatcaatagtaagttgtggaatgcatcttcaagaggtcttttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6785678 gtttatttaagtattaggttcatcatgtcatgcatgcatgacttttatttttgcatatatcaatagtaagttgtggaatgcatcttcaagaggtcttttg 6785777  T
Q  219 taagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6785778 taagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaataccatccatattcgatattaggattaggataacgagc 6785877  T
Q  319 acaaaaactcccacttttcttctttgtacaatcaacatgagactggcataaatt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6785878 acaaaaactcccacttttcttctttgtacaatcaacatgagactggcataaatt 6785931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 6785589 - 6785683
Alignment:
Q  1 attggattgattacaaagtaagtacgtacatgaaaccatgcacatgcaacatttattttaatcatattggatatctaagaaatccaattgtttat 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6785589 attggattgattacaaagtaagtacgtacgtgaaaccatgcacatgcaacatttattttaatcatgttggatatctaagaaatccaattgtttat 6785683  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 6802940 - 6803086
Alignment:
Q  223 ttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaa 322  Q
    |||| |||||||  |||| | ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  6802940 ttcatagttagaaaaaatttcgaagaatacttcttgtgctttagagttagaggcaaaacaccatccatattcgatatcaagattaggataacgagcgcaa 6803039  T
Q  323 aaactcccacttttcttctttgtacaatcaacatgagactggcataa 369  Q
    ||||||||||||   ||||| || |||||| |||||||||| |||||    
T  6803040 aaactcccacttcctttcttcgtgcaatcagcatgagactgacataa 6803086  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 12837547 - 12837652
Alignment:
Q  258 gtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactcccacttttcttctttgtacaatcaacatg 357  Q
    |||| ||||||  ||| ||||||||||| |||| || | |||||| ||||||| ||||||| ||||| |||||||||  ||||||  | || ||| ||||    
T  12837547 gtgcctcagagaaagatgcaaaacaccagccatttttgttatcagaattaggagaacgagcgcaaaagctcccacttcccttcttgttgcattcatcatg 12837646  T
Q  358 agactg 363  Q
    ||||||    
T  12837647 agactg 12837652  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 7950638 - 7950498
Alignment:
Q  229 gttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactc 328  Q
    |||||||||||  ||||||||||| ||   ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||     
T  7950638 gttagaggaaacattgaagaatacatcgtatgcttcaaagttagaggaaaaacaccatccatgttcgatatcaggattaggataacgggcacaaaagctt 7950539  T
Q  329 ccacttttcttctttgtacaatcaacatgagactggcataa 369  Q
    ||||||| |||||| || |||||| | |||||||| |||||    
T  7950538 ccactttccttcttcgtgcaatcagcgtgagactgacataa 7950498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 7947220 - 7947080
Alignment:
Q  229 gttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactc 328  Q
    |||||||||||| ||||||||||| ||| |||||| |   || |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||     
T  7947220 gttagaggaaatcttgaagaatacttcttgtgctttactatttgaggaaaaacaccatccatatttgatatcaggattaggataacgagcacaaaagcta 7947121  T
Q  329 ccacttttcttctttgtacaatcaacatgagactggcataa 369  Q
    ||||||   ||||| || |||||| ||||||| || |||||    
T  7947120 ccacttcctttcttcgtgcaatcagcatgagattgacataa 7947080  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 369
Target Start/End: Complemental strand, 7941687 - 7941529
Alignment:
Q  211 gtcttttgtaagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatcaggattagga 310  Q
    ||||||| ||| || || |||||||||||| | ||||||||| ||| |||||  |  | | |||| ||||||||||||||||||||||||||||||||||    
T  7941687 gtcttttataaattgagggttagaggaaatctcgaagaatacttcttgtgctctactgcttgaggaaaaacaccatccatattcgatatcaggattagga 7941588  T
Q  311 taacgagcacaaaaactcccacttttcttctttgtacaatcaacatgagactggcataa 369  Q
    |||||||||||||| || ||||||   ||||| || |||||| ||||||| || |||||    
T  7941587 taacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataa 7941529  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 368
Target Start/End: Complemental strand, 25481910 - 25481743
Alignment:
Q  201 tcttcaagaggtcttttgtaagttcagagttagaggaaatgttgaagaatacgtctcgtgcttcagagttagaggcaaaacaccatccatattcgatatc 300  Q
    ||||||||| ||||||||  | || ||| ||||||| ||| |||||||||| ||||  ||||||||| | ||||||||||||||| |||||||| | |      
T  25481910 tcttcaagaagtcttttgagaatttagatttagaggcaatcttgaagaatatgtcttctgcttcagactcagaggcaaaacaccagccatattccaaaat 25481811  T
Q  301 aggattaggataacgagcacaaaaactcccacttttcttctttgtacaatcaacatgagactggcata 368  Q
    || ||| ||||||||  ||||||||||||||||    |||||||| ||||||  ||||||||| ||||    
T  25481810 agaatttggataacgtccacaaaaactcccactacctttctttgtgcaatcagtatgagactgacata 25481743  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 30056008 - 30056082
Alignment:
Q  259 tgcttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactcccact 333  Q
    |||||||||| |||||||||||||||| ||||||| |||||||| ||||| | |||||||||||||| |||||||    
T  30056008 tgcttcagagatagaggcaaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaaattcccact 30056082  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 12123987 - 12123934
Alignment:
Q  271 agaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaa 324  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  12123987 agaggcaaaacaccatccatattcgatatcagcattagcataacgggcacaaaa 12123934  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 12128150 - 12128098
Alignment:
Q  272 gaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaa 324  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  12128150 gaggcaaaacaccatccatattcgatatcatcattagcataacgagcacaaaa 12128098  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 30157267 - 30157339
Alignment:
Q  261 cttcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactcccact 333  Q
    |||||||| |||||||||||||||| ||||||| |||||||| ||||||| | ||||||||| || |||||||    
T  30157267 cttcagagatagaggcaaaacaccagccatatttgatatcagaattaggaaagcgagcacaataattcccact 30157339  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 12110316 - 12110253
Alignment:
Q  271 agaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactcccactt 334  Q
    ||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||  ||||||||    
T  12110316 agaggcaaaacaccacccatattcgacatcagcattagcataacgagcacaaaagttcccactt 12110253  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 15129277 - 15129340
Alignment:
Q  268 gttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaaactccca 331  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||    
T  15129277 gttagaggtaaaacaccagccatgttcgatatcagaattaggataacgagcacagaaactccca 15129340  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 20472279 - 20472218
Alignment:
Q  263 tcagagttagaggcaaaacaccatccatattcgatatcaggattaggataacgagcacaaaa 324  Q
    |||||| |||| ||||||||||| ||||||||  |||||| |||||||||||| ||||||||    
T  20472279 tcagagctagaagcaaaacaccagccatattcattatcagaattaggataacgcgcacaaaa 20472218  T

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