View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8320_low_4 (Length: 300)

Name: NF8320_low_4
Description: NF8320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8320_low_4
NF8320_low_4
[»] chr1 (1 HSPs)
chr1 (1-300)||(40508705-40509004)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 40508705 - 40509004
Alignment:
Q  1 aatccaccaacaccatcagcatcacctccacaacatcaagtaccaaagatatctccacagttatcaccaaatggttctgctcctcaacctagtggtggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40508705 aatccaccaacaccatcagcatcacctccacaacatcaagtaccaaagatatctccacagttatcaccaaatggttctgctcctcaacctagtggtggca 40508804  T
Q  101 cgagtaaccctccggtacctataaatgtaccatctcctactcctgtaggtggtaatgttgggtgtcctcctacaccatcttccattcatggggtgaagtc 200  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40508805 cgagtaaccctccagcacctataaatgtaccatctcctactcctgtaggtggtaatgttgggtgtcctcctacaccatcttccattcatggggtgaagtc 40508904  T
Q  201 taatattgatgtggcattattggtttgtgctatgtttggtacattcctaggattttggatgatgtaggatagagcaggacattttcaaggtgctttttag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40508905 taatattgatgtggcattattggtttgtgctatgtttggtacattcctaggattttggatgatgtaggatagggcaggacattttcaaggtgctttttag 40509004  T

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