View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8321_high_1 (Length: 511)

Name: NF8321_high_1
Description: NF8321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8321_high_1
NF8321_high_1
[»] chr3 (3 HSPs)
chr3 (18-494)||(39712964-39713438)
chr3 (18-238)||(11528572-11528789)
chr3 (18-135)||(3149588-3149705)
[»] chr4 (2 HSPs)
chr4 (18-231)||(34539274-34539487)
chr4 (22-183)||(11148755-11148917)
[»] chr2 (5 HSPs)
chr2 (18-181)||(37897157-37897320)
chr2 (20-183)||(37957868-37958031)
chr2 (18-237)||(37952079-37952298)
chr2 (18-183)||(44905656-44905822)
chr2 (18-183)||(28166811-28166977)
[»] chr7 (1 HSPs)
chr7 (18-183)||(38757792-38757958)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 39712964 - 39713438
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39712964 caagagggaaaaaatgttgaagagcacatgaaagagactgtttgagagatggaagtgttgttttgcaaaaatggttggtagaatgaggaaaaggatagaa 39713063  T
Q  118 gaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagtaggatttgctgttcttgttgcaggaaacacaaga 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  39713064 gaataagcgtttagcgtagattggaccagcaaaatgcaagtcaagaaatgtgagaggaagataagtagttgttgctgttcttgttgcaggaaacacaaga 39713163  T
Q  218 gtttgctcaataagtttatgttctgctcctataggttttcccatttcttaaatttgaaatggatgggatgatatgaaatgctattgggaagaagcaattt 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39713164 gtttgctcaataagtttatgctctgctcctataggttttcccatttcttaaatttgatatggatgggatgatatgaaatgctattgggaagaagcaattt 39713263  T
Q  318 atacacctttaagagatgtaatatcacgtataaaatatggaaaatactatggtacgataannnnnnnnnnnnnnnaataattgtac-acactaatccgct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||               ||||||||||| | ||||||||  |    
T  39713264 atacacctttaagagatgtaatatcacgtataaaatatggaaaatattatggtacgacaa---ttttttttttaaaataattgtacgatactaatccatt 39713360  T
Q  417 tgagttggttcggtggtgttgactttagaccttatgtttgttttaagatgttaagtttgattctttcgatgttaattt 494  Q
    ||||||| ||||||| ||||| ||| |||| |||||||||||||||||| |||||||  ||||||||||||| |||||    
T  39713361 tgagttgattcggtgatgttggcttgagactttatgtttgttttaagatattaagttcaattctttcgatgtcaattt 39713438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11528572 - 11528789
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    |||||||||| ||||||||||||| |   |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  11528572 caagagggaagaaatgttgaagagtaagagaaagagattttttgagagatggtagtgttgttttgcaaaaatggttggttgaataagcaaaaggatagaa 11528671  T
Q  118 gaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagtaggatttgctgttcttgttgcaggaaacacaaga 217  Q
    ||||| ||||||| |||| | |||||| |||||||||||||| ||||||||||||||||||||||| |   ||| | || ||||||| || |  ||||||    
T  11528672 gaataggcgtttaacgtagactggacctgcaaaatgcaagtcgaggaatgtgagaggaagagaagttg---ttgtttttgttgttgctggcacaacaaga 11528768  T
Q  218 gtttgctcaataagtttatgt 238  Q
    |||||||||||||||||||||    
T  11528769 gtttgctcaataagtttatgt 11528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 3149705 - 3149588
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    |||||||||| ||||||||||||| |   |||||||||| || ||||||||||||||||||||||||||||||| ||||||||| || |||||| | |||    
T  3149705 caagagggaagaaatgttgaagagtaagagaaagagatttttcgagagatggaagtgttgttttgcaaaaatggctggttgaataagcaaaagggtcgaa 3149606  T
Q  118 gaataagcgtttagcgta 135  Q
    ||||| || |||| ||||    
T  3149605 gaatatgcatttaacgta 3149588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 34539274 - 34539487
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    |||||||||| ||||||||||||| |   |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||    
T  34539274 caagagggaagaaatgttgaagagtaagagaaagagattttttgagagatggaagtgttgttttgcgaaaatggttggttgaataagcaaaagggtcgaa 34539373  T
Q  118 gaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagtaggatttgctgttcttgttgcaggaaacacaaga 217  Q
    ||||| || ||||  ||| |||||||||||||||||||||||||  ||| ||||||||||| |||| |   ||| | || |||||||  |||| ||||||    
T  34539374 gaatatgcatttaatgtagattggaccagcaaaatgcaagtcaaaaaatatgagaggaagataagttgttgttgtttttgttgttgctcgaaaaacaaga 34539473  T
Q  218 gtttgctcaataag 231  Q
    ||||||||||||||    
T  34539474 gtttgctcaataag 34539487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 11148917 - 11148755
Alignment:
Q  22 agggaaaaaatgttgaagagcacatgaaagagattgttt-gagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaagaa 120  Q
    |||||| |||||||||| || |   |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||    
T  11148917 agggaagaaatgttgaacagtaagagaaagagatttttttgagagatggaagtgttgttttgcaaaaatggttggttgaataagtaaaagggtcgaagaa 11148818  T
Q  121 taagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagt 183  Q
    || || |||| |||| | ||||||| |||||||||||||||  ||||||||||||||| ||||    
T  11148817 tatgcatttaacgtagactggaccaacaaaatgcaagtcaaaaaatgtgagaggaagataagt 11148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 37897157 - 37897320
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    |||||||||| ||||||||||||| |   |||||||| |||||||||||||||||||||||||||||||||||  | ||||||||||||||  |||||||    
T  37897157 caagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttgcaaaaatgagttgttgaatgaggaaagtgatagaa 37897256  T
Q  118 gaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaa 181  Q
    ||||  |||| || | || ||||||||||| ||| |||||||||||||||||||||||||||||    
T  37897257 gaattggcgtctaacatagattggaccagctaaaggcaagtcaaggaatgtgagaggaagagaa 37897320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 37958031 - 37957868
Alignment:
Q  20 agagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaaga 119  Q
    |||||||| ||||||||||||| |   |||||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||||  |||||||||    
T  37958031 agagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttacaaaaatgggttgttgaatgtggaaagtgatagaaga 37957932  T
Q  120 ataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagt 183  Q
    ||||||||| | | || | |||||| |||||| |||||||||||||||||||||||||||||||    
T  37957931 ataagcgttcaacatagactggacctgcaaaaggcaagtcaaggaatgtgagaggaagagaagt 37957868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 37952298 - 37952079
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgtttgagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggatagaa 117  Q
    |||||||||| ||||||||||||| |   |||||||| ||||||||||||||||||||||||||  |||||||| | ||||||||||||||  |||||||    
T  37952298 caagagggaagaaatgttgaagagtaagagaaagagagtgtttgagagatggaagtgttgttttagaaaaatgggttgttgaatgaggaaagtgatagaa 37952199  T
Q  118 gaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagtaggatttgctgttcttgttgcaggaaacacaaga 217  Q
    ||||||||||| | | || | |||||| |||||| ||||||| |||||||||||||||||| |||| |   ||| | ||  |||||  ||||| |||| |    
T  37952198 gaataagcgttcaacatagactggacctgcaaaaggcaagtcgaggaatgtgagaggaagaaaagttgttgttgttcttggtgttgatggaaaaacaaca 37952099  T
Q  218 gtttgctcaataagtttatg 237  Q
    |||||||||||||| |||||    
T  37952098 gtttgctcaataagcttatg 37952079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 44905656 - 44905822
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgttt-gagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggataga 116  Q
    |||||||||| ||||||||||||| |   |||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||| || |||||| | ||    
T  44905656 caagagggaagaaatgttgaagagtaagagaaagagatttttttgagcgatggaagtgttgttttgcaaaaatggttggttaaataagcaaaagggtcga 44905755  T
Q  117 agaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagt 183  Q
    |||||| || |||| |||| | |||| ||||||||||| ||||||  ||||||||||||||| ||||    
T  44905756 agaatatgcatttaacgtagactggatcagcaaaatgctagtcaaaaaatgtgagaggaagataagt 44905822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 28166811 - 28166977
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgttt-gagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggataga 116  Q
    |||||||||| ||||||||||||| |   |||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||| || |||||| | ||    
T  28166811 caagagggaagaaatgttgaagagtaagagaaagaaatttttttgagagaaggaagtgttgttttgcaaaaatggttggttgaataagcaaaagggtcga 28166910  T
Q  117 agaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagt 183  Q
    | ||||  | ||||  ||| | |||||||||||||||||||||||  ||||||| ||||||| ||||    
T  28166911 aaaatattcatttaatgtagactggaccagcaaaatgcaagtcaaaaaatgtgaaaggaagataagt 28166977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 38757792 - 38757958
Alignment:
Q  18 caagagggaaaaaatgttgaagagcacatgaaagagattgttt-gagagatggaagtgttgttttgcaaaaatggttggttgaatgaggaaaaggataga 116  Q
    |||||||||| ||||||||||||| |   |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | ||    
T  38757792 caagagggaagaaatgttgaagagtaagagaaagagatttttttgagagatggaagtgttgttttgcaaaaatggttggttgaataagcaaaagggtcga 38757891  T
Q  117 agaataagcgtttagcgtaaattggaccagcaaaatgcaagtcaaggaatgtgagaggaagagaagt 183  Q
    |||||| || |||| |||| | ||||||| ||||||||||| |||  ||||| ||||||||| ||||    
T  38757892 agaatatgcatttaacgtagactggaccaacaaaatgcaaggcaaaaaatgttagaggaagataagt 38757958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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