View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8321_high_5 (Length: 268)

Name: NF8321_high_5
Description: NF8321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8321_high_5
NF8321_high_5
[»] chr7 (11 HSPs)
chr7 (1-89)||(19122494-19122582)
chr7 (86-145)||(46576365-46576424)
chr7 (86-145)||(31741043-31741102)
chr7 (93-138)||(11752604-11752649)
chr7 (84-145)||(38755016-38755077)
chr7 (97-145)||(47480146-47480194)
chr7 (86-149)||(42974501-42974564)
chr7 (86-145)||(48460659-48460718)
chr7 (43-73)||(19122463-19122493)
chr7 (97-139)||(38349593-38349635)
chr7 (97-138)||(33496506-33496547)
[»] chr4 (19 HSPs)
chr4 (146-258)||(6228061-6228173)
chr4 (86-146)||(45996017-45996077)
chr4 (86-145)||(5817503-5817562)
chr4 (86-146)||(37605814-37605874)
chr4 (86-146)||(55281207-55281267)
chr4 (86-145)||(17044003-17044062)
chr4 (86-144)||(25164594-25164652)
chr4 (86-145)||(43749092-43749151)
chr4 (86-144)||(32290215-32290273)
chr4 (86-139)||(51579326-51579379)
chr4 (97-145)||(20107110-20107158)
chr4 (86-146)||(25784031-25784091)
chr4 (86-146)||(32525145-32525205)
chr4 (97-145)||(39631272-39631320)
chr4 (97-151)||(51579575-51579628)
chr4 (86-139)||(3287090-3287143)
chr4 (98-147)||(9118622-9118671)
chr4 (97-146)||(42179271-42179320)
chr4 (99-139)||(48525332-48525372)
[»] chr1 (18 HSPs)
chr1 (86-145)||(1673369-1673428)
chr1 (86-139)||(29637333-29637386)
chr1 (86-146)||(2403048-2403108)
chr1 (86-145)||(1994953-1995012)
chr1 (86-145)||(6487728-6487787)
chr1 (86-145)||(27325751-27325810)
chr1 (86-145)||(44797589-44797648)
chr1 (86-146)||(40294854-40294914)
chr1 (86-146)||(527022-527082)
chr1 (86-150)||(32267588-32267652)
chr1 (86-152)||(26040963-26041029)
chr1 (86-147)||(39858345-39858406)
chr1 (97-145)||(40030838-40030886)
chr1 (86-146)||(46845779-46845839)
chr1 (93-139)||(33502654-33502700)
chr1 (86-139)||(7178234-7178287)
chr1 (86-139)||(49430587-49430640)
chr1 (84-144)||(13276585-13276645)
[»] chr5 (4 HSPs)
chr5 (86-148)||(13988244-13988306)
chr5 (86-145)||(36890377-36890436)
chr5 (84-146)||(20151383-20151445)
chr5 (98-146)||(15285328-15285376)
[»] chr3 (14 HSPs)
chr3 (86-146)||(50989202-50989262)
chr3 (86-146)||(51092334-51092394)
chr3 (86-144)||(23004757-23004815)
chr3 (86-139)||(38247804-38247857)
chr3 (86-145)||(8496706-8496765)
chr3 (86-139)||(33288138-33288191)
chr3 (86-146)||(9271109-9271169)
chr3 (86-144)||(12224126-12224184)
chr3 (86-145)||(8330715-8330774)
chr3 (97-146)||(29915093-29915142)
chr3 (97-146)||(29964246-29964295)
chr3 (86-139)||(46135533-46135586)
chr3 (86-139)||(48034932-48034985)
chr3 (84-137)||(54713532-54713585)
[»] chr6 (9 HSPs)
chr6 (86-145)||(14314109-14314168)
chr6 (86-147)||(9045831-9045892)
chr6 (97-150)||(34792785-34792838)
chr6 (86-139)||(1244679-1244732)
chr6 (89-137)||(9521943-9521991)
chr6 (97-139)||(12748217-12748259)
chr6 (91-144)||(16717991-16718044)
chr6 (86-123)||(29429606-29429643)
chr6 (86-146)||(23915971-23916031)
[»] chr2 (13 HSPs)
chr2 (86-144)||(13697088-13697146)
chr2 (86-151)||(14242638-14242703)
chr2 (88-145)||(14945861-14945918)
chr2 (86-147)||(36709314-36709375)
chr2 (86-149)||(32599371-32599434)
chr2 (86-149)||(33555486-33555549)
chr2 (86-139)||(36272784-36272837)
chr2 (101-147)||(23860302-23860348)
chr2 (86-144)||(42061354-42061412)
chr2 (107-145)||(5562936-5562974)
chr2 (103-136)||(41445383-41445416)
chr2 (98-146)||(3121609-3121657)
chr2 (86-146)||(24475824-24475884)
[»] chr8 (12 HSPs)
chr8 (86-146)||(14342312-14342372)
chr8 (86-145)||(1993763-1993822)
chr8 (86-137)||(8368494-8368545)
chr8 (86-144)||(43066027-43066085)
chr8 (86-146)||(2599530-2599590)
chr8 (88-146)||(4077086-4077144)
chr8 (86-139)||(41075720-41075773)
chr8 (86-146)||(10391428-10391488)
chr8 (86-145)||(28897995-28898054)
chr8 (86-145)||(45413661-45413720)
chr8 (86-144)||(27497174-27497231)
chr8 (98-139)||(31774730-31774771)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19122494 - 19122582
Alignment:
Q  1 acacatatctcattcaatgaggtacgcaaatataatcttttaatgtaaggcgatgaatgaccactacgtataagcatgtctgtataatt 89  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19122494 acacatatctcattcaatgaggtacacaaatataatcttttaatgtaaggcgatgaatgaccactacgtataagcatgtctgtataatt 19122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 46576365 - 46576424
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  46576365 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 46576424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 31741102 - 31741043
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||| | |||||| ||||||||||||||||||||  |||||||||||||| |||||    
T  31741102 aattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcattactc 31741043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 11752649 - 11752604
Alignment:
Q  93 tgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatc 138  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  11752649 tgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 38755016 - 38755077
Alignment:
Q  84 ataattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||| ||| | ||||| |||||||||||||||||||||  |||||||||||||| |||||    
T  38755016 ataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatcattactc 38755077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 47480146 - 47480194
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    ||||||||| |||||||||||||||||  |||||||||||||| |||||    
T  47480146 ggtgtacaaatggtacatgccacctaaggtggtctatgtatcattactc 47480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 42974501 - 42974564
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaa 149  Q
    |||||| ||| |||||| ||||||||||||||||||||  |||| ||||||||| ||| |||||    
T  42974501 aattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcactaccctaaa 42974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 48460718 - 48460659
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||| ||| | ||||||| |||||||||||||||||  |||||||||||||| |||||    
T  48460718 aattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcactactc 48460659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 73
Target Start/End: Original strand, 19122463 - 19122493
Alignment:
Q  43 atgtaaggcgatgaatgaccactacgtataa 73  Q
    |||||||||||||||||||||||||||||||    
T  19122463 atgtaaggcgatgaatgaccactacgtataa 19122493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 38349593 - 38349635
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||    
T  38349593 ggtgtacaagtggtatatgccacctaagatggtttatgtatca 38349635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 33496547 - 33496506
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatc 138  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  33496547 ggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 33496506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 6228061 - 6228173
Alignment:
Q  146 taaattatgactcttctatataactatatgaacccttttttgaagtacgcaatggtgcatgaagatttacagtaaaattgctatgaactgaaaatgaatt 245  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||| ||||    
T  6228061 taaaatatgactcttctgtataactatatgaacccttttttgaagtacacaatggttcatgaaaatttgcagtaaaattgctatgaactgaaaattaatt 6228160  T
Q  246 tcagcagtattat 258  Q
    |||||||||||||    
T  6228161 tcagcagtattat 6228173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 45996017 - 45996077
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  45996017 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactct 45996077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 5817503 - 5817562
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  5817503 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactc 5817562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 37605814 - 37605874
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  37605814 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 37605874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 55281267 - 55281207
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  55281267 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 55281207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 17044062 - 17044003
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  17044062 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 17044003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 25164594 - 25164652
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  25164594 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 25164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 43749151 - 43749092
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||| ||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  43749151 aattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 43749092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 32290273 - 32290215
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||| | |||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  32290273 aattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatcactact 32290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 51579379 - 51579326
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||| ||| |||||||||||||||||||||||||||  ||||||||||||||    
T  51579379 aattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 51579326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 20107158 - 20107110
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  20107158 ggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 20107110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 25784031 - 25784091
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||| ||||| | ||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  25784031 aattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatcactactct 25784091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 32525145 - 32525205
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| | |||| |||||||| ||||||||||| ||||||||||||||| ||||||    
T  32525145 aattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatcactactct 32525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 39631272 - 39631320
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  39631272 ggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 39631320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 51579628 - 51579575
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaatt 151  Q
    |||||||||||||||||||||||||||  |||||| ||||||| ||||| |||||    
T  51579628 ggtgtacaagtggtacatgccacctaaggtggtct-tgtatcactactcaaaatt 51579575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 3287143 - 3287090
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| |||||||||||||||||| ||| ||||  |||| |||||||||    
T  3287143 aattgtgtgtgggtgtacaagtggtacataccatctaaggtggtttatgtatca 3287090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 9118622 - 9118671
Alignment:
Q  98 gtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactcta 147  Q
    |||||||||| || ||||||||||||| |||| ||||||||| |||||||    
T  9118622 gtgtacaagttgtgcatgccacctaaagtggtttatgtatcactactcta 9118671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 42179271 - 42179320
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||| ||||||||||| ||||||||  |||||||||||||| ||||||    
T  42179271 ggtgtataagtggtacataccacctaaggtggtctatgtatcattactct 42179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 48525372 - 48525332
Alignment:
Q  99 tgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    ||||||||||||| |||||||||||| |||| |||||||||    
T  48525372 tgtacaagtggtatatgccacctaaagtggtttatgtatca 48525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 1673428 - 1673369
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1673428 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactc 1673369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 29637333 - 29637386
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  29637333 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatca 29637386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 2403048 - 2403108
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  2403048 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcactactct 2403108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 1995012 - 1994953
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  1995012 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 1994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 6487787 - 6487728
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||    
T  6487787 aattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatcactactc 6487728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 27325751 - 27325810
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  27325751 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 27325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 44797589 - 44797648
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  44797589 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 44797648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 40294854 - 40294914
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  40294854 aattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatcactactct 40294914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 527022 - 527082
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| ||||||||||||||||||||  |||||||||||||| ||||||    
T  527022 aattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactct 527082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 32267588 - 32267652
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaat 150  Q
    |||||||||| ||||||||| | ||||||||||| ||| ||||||||||||||| ||||| ||||    
T  32267588 aattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatcactactcaaaat 32267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 26041029 - 26040963
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaatta 152  Q
    |||||| ||| |||||||||||||||||||||||||||  |||| | ||||||| ||| ||||||||    
T  26041029 aattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcactaccctaaatta 26040963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 39858406 - 39858345
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactcta 147  Q
    |||||||| | |||||| |||||||| |||||||||||  |||||||||||||| |||||||    
T  39858406 aattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactcta 39858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 40030886 - 40030838
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||||||||||||| ||||||  |||||||||||||| |||||    
T  40030886 ggtgtacaagtggtacatgctacctaaggtggtctatgtatcactactc 40030838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 46845779 - 46845839
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| ||||||||||||||| ||||  |||||||||||||| ||||||    
T  46845779 aattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcactactct 46845839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 33502654 - 33502700
Alignment:
Q  93 tgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    ||||||||||||||||||||||| || ||||  ||||||||||||||    
T  33502654 tgtaggtgtacaagtggtacatgtcatctaatgtggtctatgtatca 33502700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 7178234 - 7178287
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||| ||| ||||||||| ||||||||| |||||||  ||||||||||||||    
T  7178234 aattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatca 7178287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 49430587 - 49430640
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||| | | |||| ||||||||||||||||||||  ||||||||||||||    
T  49430587 aattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatca 49430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 13276585 - 13276645
Alignment:
Q  84 ataattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| |  ||||| ||||||||||| ||||||||  |||||||||||||| ||||    
T  13276585 ataattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatcactact 13276645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 13988306 - 13988244
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaa 148  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  13988306 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactctaa 13988244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 36890436 - 36890377
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  36890436 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 36890377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 20151445 - 20151383
Alignment:
Q  84 ataattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||||| ||||||    
T  20151445 ataattatgtgtgggtgttcaagtggtatatgctacctaaagtggtctatgtatcattactct 20151383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 15285376 - 15285328
Alignment:
Q  98 gtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    ||||| ||||||||||||||| ||||  |||||||||||||| ||||||    
T  15285376 gtgtataagtggtacatgccatctaaggtggtctatgtatcactactct 15285328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 50989262 - 50989202
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  50989262 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 50989202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 51092394 - 51092334
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  51092394 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactct 51092334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 23004815 - 23004757
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  23004815 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 23004757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 38247857 - 38247804
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  38247857 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatca 38247804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 8496765 - 8496706
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||| ||| |||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  8496765 aattgtatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatcaatactc 8496706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 33288191 - 33288138
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| |||||||||||||||||| ||||||||  ||||||||||||||    
T  33288191 aattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatca 33288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 9271169 - 9271109
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||| ||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  9271169 aattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcactactct 9271109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 12224126 - 12224184
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| ||||||||| |||||||||||||||||  |||| ||||||||| ||||    
T  12224126 aattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcactact 12224184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 8330715 - 8330774
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    ||||||||||   |||||||||||||||||||| ||||  |||||||||||||| |||||    
T  8330715 aattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 8330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 29915093 - 29915142
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    ||||||||||||||| ||||||| |||  |||||||||||||| ||||||    
T  29915093 ggtgtacaagtggtatatgccacataaggtggtctatgtatcactactct 29915142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 29964246 - 29964295
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    ||||||||||||||| ||||||| |||  |||||||||||||| ||||||    
T  29964246 ggtgtacaagtggtatatgccacataaggtggtctatgtatcactactct 29964295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 46135586 - 46135533
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||| ||||||||||||| || |||||||||  ||| |||||||||||||||    
T  46135586 aattgtatgtaggtgtacaaatgatacatgccatttaagatggtctatgtatca 46135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 48034932 - 48034985
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||| ||| ||||||||||||||||||| |||||||  |||| |||||||||    
T  48034932 aattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatca 48034985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 54713585 - 54713532
Alignment:
Q  84 ataattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtat 137  Q
    |||||| ||||| | ||| |||||||||||||||||||||  ||||||||||||    
T  54713585 ataattatgtgtggatgttcaagtggtacatgccacctaacgtggtctatgtat 54713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 14314109 - 14314168
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  14314109 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 14314168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 9045892 - 9045831
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactcta 147  Q
    |||||||||| |||||||||||| ||||||||||||||  |||||||||||||| |||||||    
T  9045892 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactcta 9045831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 34792785 - 34792838
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaat 150  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  34792785 ggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactctaaat 34792838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 1244679 - 1244732
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| | ||||||||||||||||||||| |||  ||||||||||||||    
T  1244679 aattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatca 1244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 9521943 - 9521991
Alignment:
Q  89 tgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtat 137  Q
    ||||||| |||||||||||||||||||||||||||  || |||||||||    
T  9521943 tgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtat 9521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 12748259 - 12748217
Alignment:
Q  97 ggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    ||||||||||||||| |||||||||||| |||| |||||||||    
T  12748259 ggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 16718044 - 16717991
Alignment:
Q  91 tgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    ||||| ||||||||||||||| |||||||||||  |||| ||||||||| ||||    
T  16718044 tgtgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactact 16717991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 29429643 - 29429606
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaa 123  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29429643 aattgtatgtgggtgtacaagtggtacatgccacctaa 29429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 23916031 - 23915971
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| ||||||||||||||| ||||  || ||||||||||| ||||||    
T  23916031 aattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatcactactct 23915971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 13697088 - 13697146
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  13697088 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 13697146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 14242638 - 14242703
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaatt 151  Q
    |||||||||| |||||||| ||||||||| |||||||| ||||||||||||||| |||||| ||||    
T  14242638 aattgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatcactactcttaatt 14242703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 14945861 - 14945918
Alignment:
Q  88 ttgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||    
T  14945861 ttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 14945918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 36709314 - 36709375
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactcta 147  Q
    |||||||||| |||||| ||||||||||| |||||||| ||||||||||||||| |||||||    
T  36709314 aattgtgtgtgggtgtataagtggtacataccacctaagatggtctatgtatcagtactcta 36709375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 32599371 - 32599434
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaa 149  Q
    |||| ||||| | |||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  32599371 aattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactactctaaa 32599434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 33555486 - 33555549
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactctaaa 149  Q
    ||||||||||| |||||||||||||||||||||| |||  || ||||||||||| |||||||||    
T  33555486 aattgtgtgtaagtgtacaagtggtacatgccacttaaggtgatctatgtatcactactctaaa 33555549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 36272784 - 36272837
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  36272784 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatca 36272837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 23860302 - 23860348
Alignment:
Q  101 tacaagtggtacatgccacctaaaatggtctatgtatcaatactcta 147  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||    
T  23860302 tacaagtggtacatgccacctaaggtggtctatgtatcactactcta 23860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 42061354 - 42061412
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||| ||| |||||||||||||||||||||||| ||| || ||||||||||| ||||    
T  42061354 aattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatcactact 42061412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 5562974 - 5562936
Alignment:
Q  107 tggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  5562974 tggtacatgccacctaaaatagtctatgtatcactactc 5562936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 41445416 - 41445383
Alignment:
Q  103 caagtggtacatgccacctaaaatggtctatgta 136  Q
    |||||||||||||||||||||| |||||||||||    
T  41445416 caagtggtacatgccacctaaattggtctatgta 41445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 3121657 - 3121609
Alignment:
Q  98 gtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    ||||| ||||||||||||||| ||||  |||||||||||||| ||||||    
T  3121657 gtgtataagtggtacatgccatctaaggtggtctatgtatcactactct 3121609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 24475824 - 24475884
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| ||||| ||||| ||||||||  |||||||||||||| ||||||    
T  24475824 aattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatcattactct 24475884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 14342312 - 14342372
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||||| |||||| ||||||||||||||||||||  |||||||||||||| ||||||    
T  14342312 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactct 14342372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 1993763 - 1993822
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||||| |||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  1993763 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactc 1993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 8368494 - 8368545
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtat 137  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  8368494 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 43066027 - 43066085
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||||||||| ||||    
T  43066027 aattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactact 43066085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 2599590 - 2599530
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| ||||||||||||||||||||  |||||||||||||| ||||||    
T  2599590 aattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactct 2599530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 4077086 - 4077144
Alignment:
Q  88 ttgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| ||| |||||||||||||||||||||||  |||||||| ||||| ||||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatcactactct 4077144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 41075720 - 41075773
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||| ||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  41075720 aattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatca 41075773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 10391428 - 10391488
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactct 146  Q
    |||||||| | |||||| |||||| ||||||||||||| ||| ||||||||||| ||||||    
T  10391428 aattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatcattactct 10391488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 28898054 - 28897995
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||| | |||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  28898054 aattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactc 28897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 45413661 - 45413720
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatactc 145  Q
    |||||||| | | |||| ||||||||||||||||||||  |||||||||||||| |||||    
T  45413661 aattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatcactactc 45413720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 27497231 - 27497174
Alignment:
Q  86 aattgtgtgtaggtgtacaagtggtacatgccacctaaaatggtctatgtatcaatact 144  Q
    |||||| ||| | |||||||||||||||||||||||||| |||||| ||||||| ||||    
T  27497231 aattgtctgtggatgtacaagtggtacatgccacctaaagtggtct-tgtatcactact 27497174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 31774771 - 31774730
Alignment:
Q  98 gtgtacaagtggtacatgccacctaaaatggtctatgtatca 139  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  31774771 gtgtacaagtggtacatgtcacctaaggtggtctatgtatca 31774730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University