View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8321_high_6 (Length: 245)
Name: NF8321_high_6
Description: NF8321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8321_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 53219686 - 53219453
Alignment:
| Q |
1 |
tgtttcaaattcctccttacatgattatgcgaattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaact |
100 |
Q |
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| T |
53219686 |
tgtttcaaattcctccttacatgattatgcgtattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgagggaact |
53219587 |
T |
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| Q |
101 |
tgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaaatgttatcatattcgtgcagtagtttttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
53219586 |
tgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaaatgttatcatatttgtgcagtagcttttct |
53219487 |
T |
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| Q |
201 |
tttgttgttctgttattttgcactcattgatgtc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
53219486 |
tttgttgttctgttattttgcactcattgatgtc |
53219453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15411593 - 15411350
Alignment:
| Q |
1 |
tgtttcaaattcctccttac----atgattatgcgaattctagattgagggaacatgtccagggagctgacaacaatcctcttctcatatttcctgaggg |
96 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15411593 |
tgtttcaaattcctccttacttacatgattatgcatattctagattgagggaacatgtccagggagctgacaataatcctcttctcatatttcctgaggg |
15411494 |
T |
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| Q |
97 |
aacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgtaaa---------atgttatcatattcgtg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||| ||| |
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| T |
15411493 |
aacttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgtaaaatgcagtttatgttatcatattagtg |
15411394 |
T |
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| Q |
188 |
cagtagtttttcttttgttgttctgttattttgcactcattgat |
231 |
Q |
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|| ||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
15411393 |
caatagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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