View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8321_high_8 (Length: 229)
Name: NF8321_high_8
Description: NF8321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8321_high_8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 53219943 - 53219714
Alignment:
| Q |
1 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagtta-tt |
99 |
Q |
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| T |
53219943 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgatttgttgtcataatttgtcttgactgaacttaatt |
53219844 |
T |
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| Q |
100 |
tatgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagg |
199 |
Q |
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| T |
53219843 |
tatgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagg |
53219744 |
T |
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| Q |
200 |
atcgagaaattgtggcaagaaagttagtat |
229 |
Q |
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| T |
53219743 |
atcgagaaattgtggcaagaaagttagtat |
53219714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15412036 - 15411811
Alignment:
| Q |
1 |
tcaggaagagtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagttattt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
15412036 |
tcaggaagagtagggtttataatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttttcataacttgtcttgactaaa---attt |
15411940 |
T |
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| Q |
101 |
atgaattttattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaagga |
200 |
Q |
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| T |
15411939 |
atgaattttattaaaagtataactactgtacaggattgttgcaaagcaccattttggagagtgtaggatgcatttggttcaatcgatcagaagcaaagga |
15411840 |
T |
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| Q |
201 |
tcgagaaattgtggcaagaaagttagtat |
229 |
Q |
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| T |
15411839 |
tcgagaaattgtggcaagaaagttagtat |
15411811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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