View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8321_low_8 (Length: 238)
Name: NF8321_low_8
Description: NF8321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8321_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 36281754 - 36281980
Alignment:
| Q |
1 |
tagttaacattcaagttttctcattcttttaataaacaaaaatatgcacgtattaaaatcaaacatgcacaatacaccggatttttacaatttatttgat |
100 |
Q |
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| T |
36281754 |
tagttaacattcaagttttctcattcttttaataaacaaaaatatgcacgtattaaaatcaaacatgcacaatacaccggatttttacaacttatttgat |
36281853 |
T |
|
| Q |
101 |
gagttggcgatctcattttcaattgagctattactc--nnnnnnnnnagcaatgttatatctcacgaaccctttgttggtgaaactacaggatgtacgtt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
36281854 |
gagttggcgatctcattttcaattgagctattactctttttttttttagcaatgttatatctcacaaaccctttgttggtgaaactactggatgcacgtt |
36281953 |
T |
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| Q |
199 |
ttatgttcaaaatcctcgtcgaaactg |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36281954 |
ttatgttcaaaatcctcgtcgaaactg |
36281980 |
T |
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