View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8322_low_2 (Length: 295)
Name: NF8322_low_2
Description: NF8322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8322_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 44756414 - 44756163
Alignment:
| Q |
1 |
aaagagagaaagaagacacaaagacaaagacagagtcaaatgtttgtgacttcacttattaatgttcatatgcttattacacaagtaataatgacaataa |
100 |
Q |
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| T |
44756414 |
aaagagaaaaagaagacacaaagacaaagacagagtcaaatgtttgtgacttcacttat------------gcttattacacaagtaataatgacaaaaa |
44756327 |
T |
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| Q |
101 |
tttaatgaaaagaattaaatcaaattccgtgattttctatttactgatatattttgttgaagatttttatgaagtgaaattgcaaatgggaaagaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
44756326 |
tttaatgaaaagaattaaatcaaattccgtgattttctatttgctgatatattttgttgaagatttttatgaagtgtaatt--taatgggaaagaaatta |
44756229 |
T |
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| Q |
201 |
ctccgtgattttcttcttagtgata-gataggaggagtactttttatttcctttttcaattgttac |
265 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44756228 |
ctccgtgattttcttcttagtgataggataggaggagtactttttatttcctttttcaattgttac |
44756163 |
T |
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