View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8323_low_4 (Length: 243)

Name: NF8323_low_4
Description: NF8323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8323_low_4
NF8323_low_4
[»] chr7 (3 HSPs)
chr7 (1-233)||(30249327-30249556)
chr7 (188-233)||(25627904-25627949)
chr7 (115-160)||(25627762-25627807)
[»] chr8 (2 HSPs)
chr8 (22-170)||(4027383-4027531)
chr8 (188-233)||(4027621-4027666)
[»] chr2 (4 HSPs)
chr2 (22-167)||(34324807-34324952)
chr2 (22-162)||(29352911-29353051)
chr2 (188-238)||(29352760-29352810)
chr2 (188-233)||(34325045-34325090)
[»] chr5 (4 HSPs)
chr5 (115-167)||(30651131-30651183)
chr5 (115-167)||(31777477-31777529)
chr5 (188-233)||(30651279-30651324)
chr5 (188-233)||(31777625-31777670)
[»] chr6 (1 HSPs)
chr6 (188-231)||(13477593-13477635)
[»] chr4 (1 HSPs)
chr4 (188-230)||(4877553-4877595)
[»] scaffold0129 (1 HSPs)
scaffold0129 (115-151)||(17614-17650)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30249327 - 30249556
Alignment:
Q  1 tttccaaaggcgataaaacatttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  30249327 tttccaaaggcgataaaacatttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctga---cag 30249423  T
Q  101 cgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcattggagatttatagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30249424 cgctatgatttcttttcatggatttggttataaccgtgttagagatgactatacgattattaagtgtctaaataatcctaaagcatgggagatttatagt 30249523  T
Q  201 ctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    |||||||||||||||||||||||||||||||||    
T  30249524 ctaagatgtaacacttggaaaaaacttgatgtc 30249556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 25627904 - 25627949
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  25627904 ggagatttatagtctaagatgtaacacttggaaagaacttcatgtc 25627949  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 25627762 - 25627807
Alignment:
Q  115 ttcatggatttggttataaccgtgttagagatgactatacgattat 160  Q
    ||||||||||||||||| ||| || |||||||||||||| ||||||    
T  25627762 ttcatggatttggttatgaccatgctagagatgactataagattat 25627807  T

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Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 4027383 - 4027531
Alignment:
Q  22 ttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatgg 121  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||| |||||||||||| |||| ||| || ||||||||||||||||    
T  4027383 ttgtattgtggaatccaacaacagatgaaatcgttgtcattccttccagtcctatggagtctgtgtcaccttattggagcactttgatttcttttcatgg 4027482  T
Q  122 atttggttataaccgtgttagagatgactatacgattattaagtgtcta 170  Q
    |||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  4027483 atttggttatgaccgtgttagagatgactataagattattaggtgtcta 4027531  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 4027621 - 4027666
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4027621 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtc 4027666  T

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Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 34324807 - 34324952
Alignment:
Q  22 ttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatgg 121  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||| |||||||||||| |||| ||| || ||||||||||||||||    
T  34324807 ttgtattgtggaatccaacaacagatgaaatcgttgtcattcctcccagtcctatggagtctgtgtcaccttattggagcactttgatttcttttcatgg 34324906  T
Q  122 atttggttataaccgtgttagagatgactatacgattattaagtgt 167  Q
    |||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  34324907 atttggttatgaccatgttagagatgactataagattattaggtgt 34324952  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 29353051 - 29352911
Alignment:
Q  22 ttgtattgtggaatccaacaacagatgaagtcaatgtcattcctcccagtcctagggattctgtgtcacctgattgcagcgctatgatttcttttcatgg 121  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||| |||||||||||| |||| ||| || |||||| |||| ||||    
T  29353051 ttgtattgtagaatccaacaatagatgaagtcaatgtcattcctcccagtccaatggagtctgtgtcaccttattggagctctttgatttgtttttatgg 29352952  T
Q  122 atttggttataaccgtgttagagatgactatacgattatta 162  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  29352951 atttggttatgactgtgttagagatgactataagattatta 29352911  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 29352810 - 29352760
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtccatct 238  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  29352810 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcgatct 29352760  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 34325045 - 34325090
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  34325045 ggagatttatagtttaagatgtaacacttgggaaaaacttgatgtc 34325090  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 30651131 - 30651183
Alignment:
Q  115 ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 167  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  30651131 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt 30651183  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 31777477 - 31777529
Alignment:
Q  115 ttcatggatttggttataaccgtgttagagatgactatacgattattaagtgt 167  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||    
T  31777477 ttcatggatttggttatgaccatgttagagatgactataagattattaggtgt 31777529  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 30651279 - 30651324
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    ||||||||||||| ||||||||||||||||| || ||||| |||||    
T  30651279 ggagatttatagtttaagatgtaacacttgggaataacttcatgtc 30651324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 31777625 - 31777670
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatgtc 233  Q
    |||||||||||||||| |||||||||||||| || ||||| |||||    
T  31777625 ggagatttatagtctacgatgtaacacttgggaagaacttcatgtc 31777670  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 13477593 - 13477635
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgatg 231  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  13477593 ggagatttatagtctaagatgtaacactt-gagaaaacttgatg 13477635  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 4877553 - 4877595
Alignment:
Q  188 ggagatttatagtctaagatgtaacacttggaaaaaacttgat 230  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  4877553 ggagatttatagtctaagaagtaactcttggaagaaacttgat 4877595  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 17650 - 17614
Alignment:
Q  115 ttcatggatttggttataaccgtgttagagatgacta 151  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  17650 ttcatggatttggttatgaccatgttagagatgacta 17614  T

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