View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_high_1 (Length: 1089)
Name: NF8324_1D_high_1
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 819; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 23 - 911
Target Start/End: Complemental strand, 49556199 - 49555304
Alignment:
| Q |
23 |
aagcttgttgagctttatctggacccaagaggtggtttccaacatcattaaaagagataatcctcctttatgactgtgttggagtctggttttgcttctg |
122 |
Q |
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| T |
49556199 |
aagctcgttgagctttatctggacccaagaggtggtttccaacatcattaaaagagataatcctcctgtatgactgtgttggagtctggttttgcttctg |
49556100 |
T |
|
| Q |
123 |
aagattagagtttcattcgatagtttggggttagagtcagccatataatttgtagggaagcaaatcattgcgttgatgcatgttcttgcttctattggct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49556099 |
aagattagagtttcattcgatagtttggggttagagtcagccatataatttgtagggaagcaaatcattgcgttgatgcatgttcttgcttctattggct |
49556000 |
T |
|
| Q |
223 |
gcgattataggtcccactgatttatgtataaacacctatttgctcagctaggccaagtttttgcttgctgattgtatgacagtagcctttcctttcctcg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49555999 |
gcgattataggtcccactgatttatgtataaacacctatttgctcagctaggccaagtttttgctcgctgattgtatgacagtagcctttcctttcctcg |
49555900 |
T |
|
| Q |
323 |
tcttatttccttagttttgttttatggacctagacatttttatttatgtaaataaaaaagaagtcaaacagctcataagtcaaaaactggaaaatcaact |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49555899 |
tcttatttccttagttttgttttatggacctagacatttttatttatgtaaataaaaaagaagtcaaacagctcataagtcaaaaactggaaaatcaact |
49555800 |
T |
|
| Q |
423 |
tttctctcaatgaaattatttggttcgattccttttacaaatatttgatcaagtgtatctctgattccacttcaaaagagatctgaactaatatgaaggt |
522 |
Q |
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| T |
49555799 |
tttctctcaatgaaattatttggttcgattccttttacaaatatttgatcaagtgtatctttgattccacttcaaaagagatctgaactaatatgaaggt |
49555700 |
T |
|
| Q |
523 |
gcaaatttgatttttgagtaaaattgattttgcctttgtaa-------nnnnnnnnngtcaattagactagtagctagatattcaccccataaggtgaat |
615 |
Q |
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| T |
49555699 |
gcaaatttgatttttgagtaaaattgattttgcctttgtaaatttttttttttttttgtcaattagactagtagctagatattcaccccataaggtgaat |
49555600 |
T |
|
| Q |
616 |
aagtggtttgaaattgcagttttttattctaaaattcatttttacacatacttgcttttacggactaattgacaaattgtccaaatttgggaagaaattg |
715 |
Q |
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| T |
49555599 |
aagtggtttgaaattgcagttttttattctaaaattcatttttacacatacttgcttttagagactaattgacaaattgtccaaatttgggaagaaattg |
49555500 |
T |
|
| Q |
716 |
gatactcattttgcttcaaaggtaactttttctccaatattatggcgttttcctcacttcaatggtgtcttcaatctcttcaatgatgtttaatctataa |
815 |
Q |
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| T |
49555499 |
gatactcattttgcttcaaaggtaactttttctccaatattatggcgttttcctcacttcaatggtgtcttcaatctcttcaatgatgtttaatctataa |
49555400 |
T |
|
| Q |
816 |
aataaaacatcggcaatggactatgatgggcgagggatctctatttacaaagagtagacaaattaaagtaacaataagccaatattctcttcatgc |
911 |
Q |
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| T |
49555399 |
aataaaacatcggcaatggactatgatgggcgagggatctctatttacaaagagtagacaaattaaagtaacaataagccaatattctcttcatgc |
49555304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 908 - 980
Target Start/End: Complemental strand, 49555226 - 49555154
Alignment:
| Q |
908 |
atgccttcgtaagactttgaataacttgtgttagtgacgtagtgcaatgagtattttgatgcaaatcaaaggt |
980 |
Q |
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| T |
49555226 |
atgccttcgtaagactttgaataacttgtgttagtgacgtagtgcaatgagtattttgatgcaaatcaaaggt |
49555154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1035 - 1089
Target Start/End: Complemental strand, 49555099 - 49555045
Alignment:
| Q |
1035 |
aatcattggctggttgtttcctattccatgataatttttcacaaagctttgtgaa |
1089 |
Q |
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| T |
49555099 |
aatcattggctggttgtttcctattccatgataatttttcacaaagctttgtgaa |
49555045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 587 - 621
Target Start/End: Complemental strand, 10572958 - 10572924
Alignment:
| Q |
587 |
tagctagatattcaccccataaggtgaataagtgg |
621 |
Q |
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| T |
10572958 |
tagctagatattcaccctataaggtgaataagtgg |
10572924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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