View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_high_5 (Length: 309)
Name: NF8324_1D_high_5
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 38275078 - 38275371
Alignment:
| Q |
4 |
caataacgaacaataacattttatcacaacagaacaactagctcactgtttagtaagaagagaatagacgaagagaaaggatcgagtt---------caa |
94 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38275078 |
caataacaaacaataacattttatcacaacagaacaactagctcactgtttagtaagaagagaatagacgaagagaaaggatcgagttcaattagttcaa |
38275177 |
T |
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| Q |
95 |
ttgtaccgtagcctcacacacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagac |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275178 |
ttgtaccgtagcctcacacacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagac |
38275277 |
T |
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| Q |
195 |
atctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275278 |
atctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataa |
38275371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
167 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
266 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||| | |||||||||| |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
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| Q |
267 |
ttaccga |
273 |
Q |
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||||||| |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 20595108 - 20595184
Alignment:
| Q |
50 |
tgtttagtaagaagagaatagacgaagagaaaggatcgagttcaattgtaccgtagcctcacacacaaacaagggaa |
126 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||||| |||||||||| |
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| T |
20595108 |
tgttcagtaagaagagaatagacggcgagaaagaatcgaattcaattacaccatagcctcacacaccaacaagggaa |
20595184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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