View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_11 (Length: 291)
Name: NF8324_1D_low_11
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 49556822 - 49556527
Alignment:
| Q |
3 |
attaaaatgcttgtatttagctgctacaaggagaatagatggaggacggttgtgaaacttgcagcctgaagtgtatatgtttatggtaatggtgttctca |
102 |
Q |
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| T |
49556822 |
attaaaatgcttgtatttagctgctacaaggagaatagatggaggacggttgtgaaacttgcagcctgaagtgtatatgtttatggtaatggtgttctca |
49556723 |
T |
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| Q |
103 |
ccgctttcagcacacttgtaggacagtacctgtgcctggtaaaattgtagcttacatggttttgttttccattgattcaagacgggaattgtaacatgag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49556722 |
ccgctttcagcacacttgtaggacagtacctgtgcctggtaaaattgtagcttacatggttttgttttccattgattcaagacgggaattgtaacatgag |
49556623 |
T |
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| Q |
203 |
ggataagaacgcaaaagacagcttgcattctgcactaagagtgtg-------cttagaaccgtgtctgttgtcttcccaaagacacgacaaggtag |
291 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49556622 |
ggataagaacgcaaaagacagcttccattctgcactaagagtgtgtttagactttagaaccgtgtctgttgttttcccaaagacacgacaaggtag |
49556527 |
T |
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