View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_13 (Length: 284)
Name: NF8324_1D_low_13
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 1582689 - 1582440
Alignment:
| Q |
18 |
ttgacatcaagtgaatcaatatcctagcttttagcatcaaaattacttgtgaaacttggtcttgaatattgtcatgtatagtgccttgggattccacata |
117 |
Q |
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| T |
1582689 |
ttgacatcaagtgaatcaatatcttagcttttagcatcaaaattacttgtgaaacttggtcttgaatattgtcatgtatagtgccttgggattccacata |
1582590 |
T |
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| Q |
118 |
aatcctctccacattttgtgtgcagctgttgatgacgacgtactcgaaacagattccttcacattcccaaaaccaaccgaagaatgctacacattccaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582589 |
aatcctctccacattttgtgtgcagctgttgatgacgacgtactcgaaacagattccttcacattcccaaaaccaaccgaagaatgctacacattccaag |
1582490 |
T |
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| Q |
218 |
aactattattgaaagtgcattaccagacccctctttctctatcaagtgat |
267 |
Q |
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| T |
1582489 |
aactattattgaaagtgcattaccagacccctctttctctatcacgtgat |
1582440 |
T |
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