View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_15 (Length: 274)
Name: NF8324_1D_low_15
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_15 |
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| [»] scaffold0763 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 19157351 - 19157593
Alignment:
| Q |
14 |
tggacatcatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19157351 |
tggacaacatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
19157450 |
T |
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| Q |
114 |
caagtttcaaaatcagtgaaatctaaagtaccaagtactccatcattcactagtcctttgattctctgaatggagatatgtcctaatctccggtgccaca |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19157451 |
caagtttcaaaatcagtgaagtctaaagtaccaagtactccatcattcactagtcttttgattctctgaatggagatatgtcctaatctccggtgccaca |
19157550 |
T |
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| Q |
214 |
aaatagagaattccttatttataacacaacgtttagttccagc |
256 |
Q |
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| T |
19157551 |
aaatagaggattcctcatttataacacaacgtttagttccagc |
19157593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 18477814 - 18477572
Alignment:
| Q |
14 |
tggacatcatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18477814 |
tggacaacatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
18477715 |
T |
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| Q |
114 |
caagtttcaaaatcagtgaaatctaaagtaccaagtactccatcattcactagtcctttgattctctgaatggagatatgtcctaatctccggtgccaca |
213 |
Q |
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| T |
18477714 |
caagtttcaaaatcagtgaaatctaaagtgccaagtactccatcattcactagtcttttgattctttgaatggagatatgtcttaatctccggtgccaca |
18477615 |
T |
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| Q |
214 |
aaatagagaattccttatttataacacaacgtttagttccagc |
256 |
Q |
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| T |
18477614 |
aaatagaggattcctcatttataacacaacgtttagttccagc |
18477572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 51980889 - 51981134
Alignment:
| Q |
14 |
tggacatcatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
113 |
Q |
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|||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||| |||| |
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| T |
51980889 |
tggacaacatatatctgaatgtatgatttctaataatttagaactcctctttgcacatttcttatacttgttagcctgctctgccttaatgcagattacg |
51980988 |
T |
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| Q |
114 |
caagtttcaaaatcagtgaaatctaaagtaccaagtactccatcattcactagtcctttgattctctgaatggagatatgtcctaatctccggtgccaca |
213 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
51980989 |
caagtttcaaaatcagtgaaatctaaagtatcaattactccatcattcactagtcttttgattcactgaatggagatgtgtccttatctccggtgccaca |
51981088 |
T |
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| Q |
214 |
aaatagagaattccttatttataacacaacgtttagttccagcatg |
259 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
51981089 |
aaatagaggattccttatttataacacaacctttagttccagcatg |
51981134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0763 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0763
Description:
Target: scaffold0763; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 2503 - 2375
Alignment:
| Q |
14 |
tggacatcatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503 |
tggacaacatatatctgaatgtatgatttctaatatttcagaactcctctttgcacctttcttatacttgttagtctgctttcccttaatgcagtttaca |
2404 |
T |
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| Q |
114 |
caagtttcaaaatcagtgaaatctaaagt |
142 |
Q |
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| T |
2403 |
caagtttcaaaatcagtgaaatctaaagt |
2375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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