View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_17 (Length: 270)
Name: NF8324_1D_low_17
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 36842169 - 36842406
Alignment:
| Q |
11 |
gagttcgatctcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcca |
110 |
Q |
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| T |
36842169 |
gagttcgatctcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcca |
36842268 |
T |
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| Q |
111 |
taattaacacttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaa |
210 |
Q |
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| T |
36842269 |
taattaacacttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaa |
36842368 |
T |
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| Q |
211 |
taattggaaaccaatcattaagaatgtttccagagagt |
248 |
Q |
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| T |
36842369 |
taattggaaaccaatcattaagaatgtttccagagagt |
36842406 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 3120864 - 3120931
Alignment:
| Q |
42 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
109 |
Q |
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| T |
3120864 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
3120931 |
T |
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