View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_19 (Length: 259)

Name: NF8324_1D_low_19
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_19
NF8324_1D_low_19
[»] chr6 (5 HSPs)
chr6 (15-259)||(3047583-3047827)
chr6 (57-227)||(34605231-34605401)
chr6 (57-227)||(34726508-34726678)
chr6 (42-225)||(34728866-34729049)
chr6 (42-219)||(33466366-33466543)
[»] chr3 (12 HSPs)
chr3 (15-258)||(30859238-30859481)
chr3 (51-215)||(38867125-38867289)
chr3 (15-219)||(563439-563643)
chr3 (42-219)||(541140-541317)
chr3 (15-219)||(530373-530577)
chr3 (42-219)||(486317-486494)
chr3 (42-219)||(553336-553513)
chr3 (42-219)||(573168-573345)
chr3 (39-258)||(39193707-39193922)
chr3 (73-134)||(30866889-30866950)
chr3 (168-220)||(14963736-14963788)
chr3 (180-220)||(30866735-30866775)
[»] chr5 (1 HSPs)
chr5 (15-258)||(1204927-1205168)
[»] chr4 (2 HSPs)
chr4 (43-219)||(55773274-55773450)
chr4 (43-219)||(55837485-55837661)
[»] chr1 (3 HSPs)
chr1 (136-220)||(40140352-40140436)
chr1 (142-219)||(49440992-49441069)
chr1 (136-219)||(49541118-49541201)
[»] chr2 (1 HSPs)
chr2 (136-220)||(34678632-34678716)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 3047583 - 3047827
Alignment:
Q  15 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3047583 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 3047682  T
Q  115 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3047683 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 3047782  T
Q  215 tcaatgactcagtttttgaggttgatttctcttgttttgcttgca 259  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  3047783 tcaataactcagtttttgaggttgatttctcttgttttgcttgca 3047827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 34605231 - 34605401
Alignment:
Q  57 cttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagcggatatttgatcatg 156  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||| ||||||    
T  34605231 cttcttcagcttacctcacgataaagtttatcactcaaagatgatcaataactacttccgatttgtctatcatgggtcttctagcggatatttcatcatg 34605330  T
Q  157 acagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatgactcagt 227  Q
    ||| | || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  34605331 acacgaaaagataattcatttatacttattaatccatttacaagaagaaagatgctaatcaataactcagt 34605401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 34726508 - 34726678
Alignment:
Q  57 cttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagcggatatttgatcatg 156  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||||| ||||||    
T  34726508 cttcttcagcttacctcacgataaagtttatcactcaaagatgatcaataactacttccgatttgtctatcatgggtcttctagcggatatttcatcatg 34726607  T
Q  157 acagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatgactcagt 227  Q
    ||| | || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  34726608 acacgaaaagataattcatttatacttattaatccatttacaagaagaaagatgctaatcaataactcagt 34726678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 34728866 - 34729049
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||||||   |||| | ||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |    
T  34728866 taagaaatctttcaacttcttgagcttacctcacgataaagtttatcactcaaagatgatcaataactacttccgatttgcctatcatgggtcttctaac 34728965  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatgactca 225  Q
    |||||||| ||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  34728966 ggatatttcatcatgacacgaaaagataattcatttatacttattaatccatttacaagaagaaagatgctaatcaataactca 34729049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 33466543 - 33466366
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||||||   |||| ||||| |||||||| ||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||| |||||     
T  33466543 taagaaatctttcaacttcttcagcttacctcacaataaagtttatcattcaaagatgatcaataactacttcccatttgcctatcatgggtcttctagt 33466444  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    |||||||| ||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  33466443 ggatatttcatcatgacacgaaaagataattcatttatacttattaatccatttacaagaagaaagatgttaatcaat 33466366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 30859481 - 30859238
Alignment:
Q  15 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 114  Q
    ||||||| ||||||||||||| |  | |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||     
T  30859481 attacttatccaaaggtcttcttcgtttaagcaatctttttccttcatcagcttacctcaccataaagtttttcactcaaagatgatcaataacttattt 30859382  T
Q  115 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 214  Q
    | | |||| ||||| ||||| ||||| ||||||||||||||||||  |   ||||| ||||||||| ||||||||||||||| ||||||||||||| |||    
T  30859381 ccacttgcttatcaagggtcttctagtggatatttgatcatgacacagccagataactcatttatattaattaatccatttagaagaagaaagatgataa 30859282  T
Q  215 tcaatgactcagtttttgaggttgatttctcttgttttgcttgc 258  Q
    ||||| ||||||  ||| | |||| |||||||||||||||||||    
T  30859281 tcaataactcagcctttaaagttgttttctcttgttttgcttgc 30859238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 51 - 215
Target Start/End: Complemental strand, 38867289 - 38867125
Alignment:
Q  51 tttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagcggatatttg 150  Q
    ||||||||| |||||| || ||||||| ||||||||||||| |||||||  |||||| ||| ||   ||||||||||||||||| |||||||||||||||    
T  38867289 tttttcctttatcagcttatctcaccaaaaagtttatcacttaaagatggccaataacttcgtcatttttgcctatcatgggtcttctagcggatatttg 38867190  T
Q  151 atcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaat 215  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||    
T  38867189 atcatgacagggaaaaatgattcatttatactaattaatccatttaccagaagaaagatggtaat 38867125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 563643 - 563439
Alignment:
Q  15 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 114  Q
    ||||||| | |||| ||||||  ||| | ||||||||||||||||||||||| ||||| |||| |||||||||||||| ||| |||||||| | || |      
T  563643 attacttgttcaaaagtcttcccattatgagaaatctttttccttcatcagcttacctgaccaaaaagtttatcactcgaaggtgatcaatcacttttgg 563544  T
Q  115 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 214  Q
    |  || ||||||  |||||| ||||| ||||||||||||||||||  | |  ||||||||||||| ||||| |||| ||| |||||||||||||||| ||    
T  563543 cacttagcctattgtgggtcttctagtggatatttgatcatgacaacgcaaaataattcatttatgctaatcaatctattcacaagaagaaagatggaaa 563444  T
Q  215 tcaat 219  Q
    |||||    
T  563443 tcaat 563439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 541317 - 541140
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||| |||||||||||||||||| || |||  |||||||||||||| |||| ||||||| ||||||  |   |||| |||  ||| |  ||||||    
T  541317 taagaaatcattttccttcatcagcatagctgaccgaaaagtttatcactccaagacgatcaatcaattctggcaggttgcttattctggctgttctagc 541218  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    ||||||||||||||||||||| |  ||||||| ||| | ||| | |||||||||||||||||||||| ||||||||||    
T  541217 ggatatttgatcatgacaggggacaataattcttttctgctattgaatccatttacaagaagaaagaaggtaatcaat 541140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 530577 - 530373
Alignment:
Q  15 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 114  Q
    ||||||| | |||| ||||||  ||| | |||||| |||||||||||||||| ||||| |||  |||||||||||||| ||| | |||||| | || |      
T  530577 attacttgttcaaaagtcttcccattatgagaaatatttttccttcatcagcttacctgaccgaaaagtttatcactcgaaggtaatcaatcacttttgg 530478  T
Q  115 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 214  Q
    || || ||||||  |||||| ||||| ||||||||||||||||||  | |  ||||||||||||| ||||| |||| |||||||||||||||||||| ||    
T  530477 cgcttagcctattgtgggtcttctagtggatatttgatcatgacaacgcataataattcatttatgctaatgaatctatttacaagaagaaagatggaaa 530378  T
Q  215 tcaat 219  Q
    |||||    
T  530377 tcaat 530373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 486494 - 486317
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||| |||||||||||||||||| || |||  |||||||||||||| |||| ||||||| ||||||  |  |||||||||  |||    ||||||    
T  486494 taagaaatccttttccttcatcagcatagctgaccgaaaagtttatcactcgaagacgatcaatcaattctggcactttgcctattttggcagttctagc 486395  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    |||||||||||||||| |||| |  | ||||| ||| | ||| | |||||||||||||||||||||| ||||||||||    
T  486394 ggatatttgatcatgagaggggacaacaattcttttctgctattaaatccatttacaagaagaaagaaggtaatcaat 486317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 553513 - 553336
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||| |||||||||||||||||| || |||  |||||||||||||| |||| ||||||| ||||||  |   |||| |||  ||| |  ||||||    
T  553513 taagaaatccttttccttcatcagcatagctgaccgaaaagtttatcactcgaagacgatcaatcaattctggcacgttgcatattctggctgttctagc 553414  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    || |||||||||||||||||| |  ||||||| ||| | ||| | |||||||||||||||||||||| ||||||||||    
T  553413 ggttatttgatcatgacaggggacaataattcttttctgctattgaatccatttacaagaagaaagaaggtaatcaat 553336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 573345 - 573168
Alignment:
Q  42 taagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagc 141  Q
    ||||||||| |||||||||||||||||| || |||  |||||||||||||| |||| ||| ||| ||||||  |  |||||||||  ||| |  ||||||    
T  573345 taagaaatccttttccttcatcagcatagctgaccgaaaagtttatcactcgaagacgattaatcaattctggcactttgcctatactggctgttctagc 573246  T
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    |||||||||||| ||||| || |   |||||| ||| | ||| | |||||||||||||||||||||| ||||||||||    
T  573245 ggatatttgatcttgacaagggacactaattcttttctgctattgaatccatttacaagaagaaagaaggtaatcaat 573168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 258
Target Start/End: Complemental strand, 39193922 - 39193707
Alignment:
Q  39 ttctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaag--atgatcaataaattcttccgatttgcctatcatgggtcat 136  Q
    ||||||||||||||||| |||| | ||| ||| |||   ||||| |||||| |||||   ||||||||||| | ||||   | ||||||||| ||||| |    
T  39193922 ttctaagaaatcttttttcttcttgagcttacatca---taaagcttatcaatcaaattcatgatcaataactacttcatgtatgcctatcaagggtctt 39193826  T
Q  137 ctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatgactcagtttttgaggt 236  Q
    ||||||||||||||||  || |||   |  |||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||   ||||| ||    
T  39193825 ctagcggatatttgatattgtcag---aatataagtcatttatactacttaatccatttacaagaagaatgatggtaatcaaccactcaccctttgaagt 39193729  T
Q  237 tgatttctcttgttttgcttgc 258  Q
    |||| ||| | |||||||||||    
T  39193728 tgatatctatggttttgcttgc 39193707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 30866950 - 30866889
Alignment:
Q  73 caccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtc 134  Q
    ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||    
T  30866950 caccataaagtttatcactcaaaaatgatcaataacttctttccatttgcctatcatgggtc 30866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 14963736 - 14963788
Alignment:
Q  168 taattcatttatactaattaatccatttacaagaagaaagatggtaatcaatg 220  Q
    |||||||||||| ||||| |||||||||||||||| ||| | |||||||||||    
T  14963736 taattcatttatgctaatcaatccatttacaagaataaaaaaggtaatcaatg 14963788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 30866775 - 30866735
Alignment:
Q  180 actaattaatccatttacaagaagaaagatggtaatcaatg 220  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  30866775 actaataaatccatttacatgaagaaagatggtaatcaatg 30866735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 1205168 - 1204927
Alignment:
Q  15 attacttctccaaaggtcttcatattctaagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttc 114  Q
    ||||||| |||||| |||||||  |||| | |||||||||||||||| |||| || |  |||| ||||||||||||||||||||| | ||||| ||||||    
T  1205168 attacttgtccaaatgtcttcaatttctgaaaaatctttttccttcaccagcttagc--accaaaaagtttatcactcaaagatgttaaataacttcttc 1205071  T
Q  115 cgatttgcctatcatgggtcatctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaa 214  Q
      |||||| ||||| ||||| |||||||||||||| ||||||||| | |   |||||||||||||| | ||||||||||||||||||| |||||||  ||    
T  1205070 aaatttgcttatcaagggtcttctagcggatatttcatcatgacaagaagaaataattcatttatattgattaatccatttacaagaaaaaagatgaaaa 1204971  T
Q  215 tcaatgactcagtttttgaggttgatttctcttgttttgcttgc 258  Q
    ||||| |||||   ||||| || |||||||||| ||||||||||    
T  1204970 tcaataactcaacctttgaagtcgatttctctttttttgcttgc 1204927  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 55773274 - 55773450
Alignment:
Q  43 aagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagcg 142  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||| | ||||  |  ||||| |||  ||| || ||||| |    
T  55773274 aagaaatctttttcctttatcagcatacctaaccaaaaagtttatcgctcaaagatgatcaattatttctggcactttgcatattctggatcttctagtg 55773373  T
Q  143 gatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    ||||||||||||||||||||||  |||| |||||| | ||||| ||||||||||| |||||||||| ||||||||||    
T  55773374 gatatttgatcatgacagggaacaataactcatttctgctaatgaatccatttacgagaagaaagaaggtaatcaat 55773450  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 55837485 - 55837661
Alignment:
Q  43 aagaaatctttttccttcatcagcatacctcaccataaagtttatcactcaaagatgatcaataaattcttccgatttgcctatcatgggtcatctagcg 142  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||| | ||||  |  ||||| |||  ||| || ||||| |    
T  55837485 aagaaatctttttcctttatcagcatacctaaccaaaaagtttatcgctcaaagatgatcaattatttctggcactttgcatattctggatcttctagtg 55837584  T
Q  143 gatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    ||||||||||||||||||||||  |||| |||||| | ||||| ||||||||||| |||||||||| ||||||||||    
T  55837585 gatatttgatcatgacagggaacaataactcatttctgctaatgaatccatttacgagaagaaagaaggtaatcaat 55837661  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 40140352 - 40140436
Alignment:
Q  136 tctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatg 220  Q
    |||||||||||||| |||||| | ||| |  ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  40140352 tctagcggatattttatcatggcggggtataataattcatttatactaatcaatccgtttacaagaataaagaaggtaatcaatg 40140436  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 49441069 - 49440992
Alignment:
Q  142 ggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    |||||||| |||||| ||||| |  ||||||||||||| ||||| |||||||||||||||| ||| | ||||||||||    
T  49441069 ggatattttatcatggcaggggacaataattcatttatgctaatcaatccatttacaagaataaacaaggtaatcaat 49440992  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 49541201 - 49541118
Alignment:
Q  136 tctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaat 219  Q
    ||||| |||||||| || ||| ||||| |  ||||||||||||| ||||| |||||||||||||| | ||||| ||||||||||    
T  49541201 tctagtggatatttaattatggcaggggacaataattcatttatgctaatcaatccatttacaaggataaagaaggtaatcaat 49541118  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 34678632 - 34678716
Alignment:
Q  136 tctagcggatatttgatcatgacagggaaggataattcatttatactaattaatccatttacaagaagaaagatggtaatcaatg 220  Q
    |||||||||||||| ||||||| || |    ||||||||||| | ||||| ||||||||||| |||  ||||| |||||||||||    
T  34678632 tctagcggatattttatcatgagagagtgcaataattcatttttgctaatcaatccatttacgagattaaagaaggtaatcaatg 34678716  T

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