View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_1D_low_20 (Length: 259)
Name: NF8324_1D_low_20
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 3709593 - 3709475
Alignment:
| Q |
23 |
agccatgtatgagaacttagatgggaggtttggcttgctgaagctgagggaagaaaatatatcatccagacataagaataagatttcgggtaaataccat |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
3709593 |
agccatgtatgagaacttagaggggaggtttggcttactgaagctgagggaagaaaatatatcatccagacataagaataagatgttggggaaataccat |
3709494 |
T |
|
| Q |
123 |
ccgaactttagaacaagaa |
141 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
3709493 |
ccgaactatggaacaagaa |
3709475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 3709449 - 3709379
Alignment:
| Q |
189 |
ttttggatgaagaagatgatggtcgaataacacttatccgagctcaagaactaggcagaggactaaacctg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3709449 |
ttttggatgaagaagatgatggtcgaataacacttatccgagctcaagaactaggcagaggaccaaacctg |
3709379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 3709405 - 3709351
Alignment:
| Q |
136 |
caagaactaggcagaggaccaaacctatttagtaaatagctcacatgtaccaatt |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3709405 |
caagaactaggcagaggaccaaacctgtttagtaaatagctcacatgtaccaatt |
3709351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University