View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_22 (Length: 257)
Name: NF8324_1D_low_22
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 21440967 - 21440854
Alignment:
| Q |
117 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
216 |
Q |
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| T |
21440967 |
tatttagaataaacagtcattttggtatgtaaatgtgtgactaaggagagacacatttgagaatgttcattgtaattttgattaattcaaaaactaaagc |
21440868 |
T |
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| Q |
217 |
gacagtattgctgg |
230 |
Q |
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| T |
21440867 |
gacagtattgctgg |
21440854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 21441462 - 21441352
Alignment:
| Q |
15 |
gtttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattcctcatataatttgtatttgaaaatttgaattttttatgt |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||| |
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| T |
21441462 |
gtttcatagtgtatgtgtctcttacgctgaacgagaatgaatttcttaaatttgtgcattattcctataatttgtatctgaaaattcgaattttttatgt |
21441363 |
T |
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| Q |
115 |
tttatttagaa |
125 |
Q |
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| T |
21441362 |
tttatttagaa |
21441352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 21440273 - 21440211
Alignment:
| Q |
118 |
atttagaataaacagtcattttggtatgtaaatgtgtgactaaggagtgacaaatttgagaat |
180 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||| || ||| |||| |||||||||| |
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| T |
21440273 |
atttagaataaacaatcattttggcatgtaaatgtgtgacaaatgagagacacatttgagaat |
21440211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 21440383 - 21440325
Alignment:
| Q |
17 |
ttcatagtgtatgtgtctcttacgttgaacgagaatgaatttcttaaatttgtgcattc |
75 |
Q |
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|||||||||||||||| ||||| | || | ||||||||||||||||| |||||||||| |
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| T |
21440383 |
ttcatagtgtatgtgtatcttaagctgtaatagaatgaatttcttaaagttgtgcattc |
21440325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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