View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_24 (Length: 250)

Name: NF8324_1D_low_24
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_24
NF8324_1D_low_24
[»] chr7 (26 HSPs)
chr7 (8-221)||(11352598-11352813)
chr7 (21-168)||(30238719-30238864)
chr7 (21-168)||(30253119-30253264)
chr7 (12-176)||(10939615-10939779)
chr7 (38-176)||(13390858-13390995)
chr7 (12-176)||(10877869-10878033)
chr7 (56-176)||(5223732-5223851)
chr7 (12-155)||(10203517-10203660)
chr7 (56-176)||(8280927-8281046)
chr7 (12-155)||(12153598-12153742)
chr7 (12-176)||(16223146-16223307)
chr7 (12-176)||(14971233-14971394)
chr7 (12-176)||(15400709-15400870)
chr7 (75-176)||(9132348-9132448)
chr7 (12-155)||(19335491-19335633)
chr7 (12-155)||(16775673-16775816)
chr7 (44-155)||(9653013-9653123)
chr7 (27-100)||(19018750-19018823)
chr7 (12-155)||(12356113-12356255)
chr7 (56-155)||(1376442-1376542)
chr7 (12-100)||(6486243-6486330)
chr7 (56-155)||(9990786-9990886)
chr7 (176-235)||(21852969-21853028)
chr7 (177-235)||(1263785-1263843)
chr7 (56-117)||(11347152-11347214)
chr7 (179-235)||(15108090-15108146)
[»] chr3 (28 HSPs)
chr3 (8-176)||(24697845-24698013)
chr3 (12-176)||(24507748-24507912)
chr3 (12-176)||(25921963-25922126)
chr3 (8-169)||(42368970-42369130)
chr3 (21-174)||(1343530-1343682)
chr3 (78-176)||(16974039-16974137)
chr3 (62-176)||(20246126-20246237)
chr3 (12-176)||(4831169-4831331)
chr3 (56-176)||(13885773-13885891)
chr3 (22-152)||(14889450-14889579)
chr3 (12-176)||(13607210-13607367)
chr3 (12-117)||(14281686-14281790)
chr3 (63-117)||(8942861-8942915)
chr3 (176-235)||(17261024-17261083)
chr3 (176-235)||(35434071-35434130)
chr3 (175-235)||(29853626-29853686)
chr3 (56-155)||(4847741-4847843)
chr3 (56-159)||(4854158-4854264)
chr3 (56-159)||(4875891-4875997)
chr3 (176-235)||(13439628-13439687)
chr3 (175-225)||(11761080-11761130)
chr3 (176-225)||(54012597-54012646)
chr3 (175-223)||(1351478-1351526)
chr3 (12-96)||(15486021-15486105)
chr3 (175-235)||(21549980-21550040)
chr3 (175-227)||(30451538-30451590)
chr3 (175-223)||(39846591-39846639)
chr3 (176-235)||(41747441-41747501)
[»] chr2 (21 HSPs)
chr2 (12-176)||(26023373-26023536)
chr2 (22-176)||(29841862-29842016)
chr2 (21-175)||(17335526-17335680)
chr2 (56-175)||(39667079-39667197)
chr2 (12-155)||(17980342-17980485)
chr2 (12-174)||(23662947-23663108)
chr2 (62-176)||(25906769-25906882)
chr2 (13-155)||(22683944-22684086)
chr2 (12-155)||(24373766-24373909)
chr2 (22-117)||(18595463-18595558)
chr2 (173-226)||(24952063-24952116)
chr2 (175-226)||(8898297-8898348)
chr2 (175-226)||(14793463-14793514)
chr2 (189-235)||(7893983-7894029)
chr2 (175-225)||(43766490-43766540)
chr2 (177-226)||(29640763-29640812)
chr2 (178-222)||(1366780-1366824)
chr2 (175-223)||(8214570-8214618)
chr2 (190-226)||(29949878-29949914)
chr2 (175-235)||(32845661-32845721)
chr2 (175-235)||(36944229-36944289)
[»] chr4 (29 HSPs)
chr4 (8-174)||(11554312-11554478)
chr4 (21-176)||(15782809-15782963)
chr4 (13-155)||(16661330-16661472)
chr4 (21-176)||(15699349-15699502)
chr4 (12-155)||(20323768-20323911)
chr4 (12-155)||(27919691-27919834)
chr4 (44-155)||(13524038-13524148)
chr4 (12-175)||(19584326-19584487)
chr4 (42-175)||(16835864-16835995)
chr4 (12-155)||(16586720-16586863)
chr4 (176-235)||(26144157-26144216)
chr4 (176-227)||(35370395-35370446)
chr4 (167-226)||(36405649-36405708)
chr4 (138-176)||(5985149-5985186)
chr4 (166-216)||(35904870-35904920)
chr4 (176-226)||(47858437-47858487)
chr4 (177-235)||(50719908-50719966)
chr4 (198-235)||(22272951-22272988)
chr4 (177-226)||(26144355-26144404)
chr4 (168-225)||(33294932-33294989)
chr4 (56-155)||(39044947-39045048)
chr4 (198-235)||(41325530-41325567)
chr4 (175-226)||(4812584-4812636)
chr4 (175-223)||(6439183-6439231)
chr4 (175-223)||(6439432-6439480)
chr4 (12-155)||(10492378-10492521)
chr4 (175-235)||(12878673-12878733)
chr4 (175-223)||(35804077-35804125)
chr4 (176-224)||(47629207-47629255)
[»] chr5 (24 HSPs)
chr5 (12-176)||(24511102-24511266)
chr5 (12-176)||(19527162-19527324)
chr5 (8-176)||(18958356-18958523)
chr5 (12-176)||(25917008-25917171)
chr5 (42-176)||(24660749-24660881)
chr5 (12-176)||(25087186-25087348)
chr5 (12-176)||(25145155-25145317)
chr5 (34-173)||(20972193-20972331)
chr5 (56-176)||(23987335-23987455)
chr5 (12-139)||(29831244-29831371)
chr5 (12-155)||(27735900-27736043)
chr5 (22-161)||(22847169-22847306)
chr5 (21-175)||(24129489-24129641)
chr5 (12-155)||(23274163-23274305)
chr5 (12-175)||(16739525-16739689)
chr5 (43-176)||(24670295-24670426)
chr5 (43-176)||(24707070-24707201)
chr5 (43-176)||(24740064-24740195)
chr5 (43-176)||(24752833-24752964)
chr5 (12-88)||(20057278-20057354)
chr5 (175-226)||(5661882-5661933)
chr5 (177-235)||(13012435-13012493)
chr5 (177-235)||(13083845-13083903)
chr5 (38-155)||(16700954-16701070)
[»] chr1 (27 HSPs)
chr1 (27-176)||(18934944-18935092)
chr1 (12-176)||(22045501-22045664)
chr1 (12-156)||(17317356-17317500)
chr1 (56-176)||(25221074-25221193)
chr1 (12-169)||(29984056-29984212)
chr1 (12-108)||(25380205-25380301)
chr1 (12-176)||(19957352-19957517)
chr1 (64-176)||(21982829-21982942)
chr1 (56-155)||(25974399-25974499)
chr1 (22-155)||(20405682-20405815)
chr1 (27-100)||(23510802-23510875)
chr1 (56-114)||(16153548-16153606)
chr1 (12-152)||(15546157-15546294)
chr1 (12-88)||(15851730-15851806)
chr1 (62-155)||(22852638-22852734)
chr1 (12-96)||(13332916-13333000)
chr1 (56-148)||(19818443-19818538)
chr1 (12-100)||(24592253-24592341)
chr1 (42-155)||(16969558-16969671)
chr1 (54-155)||(17199829-17199929)
chr1 (175-235)||(16555528-16555588)
chr1 (62-155)||(23478296-23478390)
chr1 (172-216)||(16555320-16555364)
chr1 (177-225)||(35384465-35384513)
chr1 (177-225)||(39160541-39160589)
chr1 (175-215)||(39657271-39657311)
chr1 (177-225)||(47979811-47979858)
[»] scaffold0711 (1 HSPs)
scaffold0711 (12-174)||(4150-4312)
[»] chr6 (13 HSPs)
chr6 (12-176)||(20403204-20403366)
chr6 (56-176)||(10747115-10747234)
chr6 (89-176)||(9338031-9338118)
chr6 (24-133)||(25929591-25929700)
chr6 (12-117)||(17583049-17583153)
chr6 (71-153)||(16598665-16598747)
chr6 (80-155)||(18565190-18565266)
chr6 (176-235)||(22362936-22362995)
chr6 (176-223)||(29239712-29239759)
chr6 (56-117)||(23575750-23575812)
chr6 (16-110)||(24005515-24005609)
chr6 (198-235)||(7054282-7054319)
chr6 (60-155)||(15935385-15935481)
[»] scaffold0767 (1 HSPs)
scaffold0767 (56-172)||(2025-2141)
[»] chr8 (16 HSPs)
chr8 (12-176)||(17125309-17125470)
chr8 (69-176)||(19303765-19303872)
chr8 (52-155)||(16647874-16647977)
chr8 (56-148)||(14992375-14992468)
chr8 (127-176)||(16598902-16598950)
chr8 (56-176)||(19236651-19236771)
chr8 (56-176)||(19309835-19309955)
chr8 (12-95)||(22741574-22741657)
chr8 (177-235)||(18367026-18367084)
chr8 (166-226)||(30222095-30222155)
chr8 (177-235)||(9855985-9856044)
chr8 (176-226)||(21692613-21692663)
chr8 (176-222)||(24375970-24376016)
chr8 (56-148)||(8366921-8367014)
chr8 (198-235)||(27198165-27198202)
chr8 (176-224)||(23389349-23389397)
[»] scaffold0125 (1 HSPs)
scaffold0125 (12-155)||(6314-6457)
[»] scaffold0111 (1 HSPs)
scaffold0111 (12-155)||(26161-26304)
[»] scaffold0577 (1 HSPs)
scaffold0577 (12-176)||(617-779)
[»] scaffold0411 (1 HSPs)
scaffold0411 (28-176)||(12856-12994)
[»] scaffold0134 (1 HSPs)
scaffold0134 (21-155)||(42241-42375)
[»] scaffold0561 (1 HSPs)
scaffold0561 (12-153)||(558-697)
[»] scaffold0018 (1 HSPs)
scaffold0018 (56-155)||(63539-63639)
[»] scaffold0103 (2 HSPs)
scaffold0103 (24-155)||(39502-39633)
scaffold0103 (49-155)||(35188-35293)
[»] scaffold0032 (1 HSPs)
scaffold0032 (12-148)||(70538-70673)
[»] scaffold0183 (1 HSPs)
scaffold0183 (12-155)||(13707-13852)
[»] scaffold0520 (1 HSPs)
scaffold0520 (57-148)||(6931-7024)
[»] scaffold0035 (1 HSPs)
scaffold0035 (12-110)||(86666-86763)
[»] scaffold1121 (1 HSPs)
scaffold1121 (69-155)||(1427-1515)
[»] scaffold0318 (1 HSPs)
scaffold0318 (175-226)||(12396-12447)
[»] scaffold0535 (1 HSPs)
scaffold0535 (56-98)||(3840-3882)
[»] scaffold0044 (1 HSPs)
scaffold0044 (57-169)||(41732-41845)
[»] scaffold0001 (1 HSPs)
scaffold0001 (175-235)||(53521-53581)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 11352813 - 11352598
Alignment:
Q  8 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11352813 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaaggatatttgaagtttgggggagtggttacat 11352714  T
Q  108 aggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttactagggttaatgatgcttta--ctcactgtaata 205  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||  | | ||||||||    
T  11352713 aggggttgaagaactaggatagtttcaaggaactcttgtaatcatatttgtaattcaacattgttactagggttaatggtgttttaccccccctgtaata 11352614  T
Q  206 tagatcattttcggtt 221  Q
    ||| |||||| |||||    
T  11352613 taggtcatttccggtt 11352598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 30238864 - 30238719
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||| ||    
T  30238864 gaagggttgcacgggtgattgaggattcgaagacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacat--gggttgaagaa 30238767  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30238766 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacat 30238719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 30253264 - 30253119
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||| ||    
T  30253264 gaagggttgcacgggtgattgaggattcgaagacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacat--gggttgaagaa 30253167  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30253166 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacat 30253119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 10939615 - 10939779
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||||||||||  |||  |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||    
T  10939615 gaagagcttgaagggtcacactagtgattgatgattcaaagacatcaagaagcaccaaattcaaagggtatttgaagttttttggagtggttacataggg 10939714  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  10939715 gttgaagaactaggatagtttcaaggaacttttgtaattacatttgtaattcaacattgttacta 10939779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 13390858 - 13390995
Alignment:
Q  38 attgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaagg 137  Q
    ||||||||||||| ||| |||||||||||| |||| ||||  ||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  13390858 attgaggattcgaggacttcaagaagcaccaaatttaaagtttatttgaagtttgggggagtgcttacataggggttgaagaactaggatagttccaagg 13390957  T
Q  138 aactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13390958 aactcttgtaatcacatttgt-attcaacattgttacta 13390995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 10878033 - 10877869
Alignment:
Q  12 gaagagcttgaagggttgcacgggtg-attgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagg 110  Q
    |||||| | ||| ||||||||||||  |||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||| |||  ||||    
T  10878033 gaagagttcgaaaggttgcacgggtatattgaggattcgaagacatcaagaagcacaaaattcaaaggttatttgacgtttgggggagtgcttatgtagg 10877934  T
Q  111 ggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| ||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  10877933 ggttgaagaactaagatagtttcaaggaactcttgtaattacttttgt-attcaacattgttacta 10877869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 5223851 - 5223732
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||  |||||||||||||||| || |||||| ||| |||||||||||||||||||||||    
T  5223851 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagttcttacataggggttgaagaagtaggattgttccaaggaactcttgtaatcacatt 5223752  T
Q  156 tgtaattcaacattgttacta 176  Q
    |||  ||||||||||||||||    
T  5223751 tgt-tttcaacattgttacta 5223732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 10203660 - 10203517
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| | |||| |||| ||||||||||| || ||||||     
T  10203660 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 10203561  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||  ||| ||||||||||||| |||||||||||||||    
T  10203560 attgaagaatcagggtagtttcaaggaattcttgtaatcacatt 10203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 8280927 - 8281046
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||  ||| |||||||||||| || |||||||    
T  8280927 tcaagaagcaccaaattcaaaggttatttgaagtttgcgggagtgtttacataggggttgaagaactaggaccgttccaaggaactcttttagtcacatt 8281026  T
Q  156 tgtaattcaacattgttacta 176  Q
    ||| |||||| ||||||||||    
T  8281027 tgt-attcaatattgttacta 8281046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 12153742 - 12153598
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| | |||||||||||||||||| |||||||||||||| |||| |     
T  12153742 gaagagcttcaaggattgcacgggtgattaaggattcaaggacatcaagaagcaccaatttcaaagggtatttgaagattgggggagtggtttcatatga 12153643  T
Q  112 gttgaataacta-ggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| | ||| || || ||| |||||| |||||||||||||||    
T  12153642 attgaagagctaggggtaatttgaaggaattcttgtaatcacatt 12153598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 16223307 - 16223146
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  |||||||||||| |||||| |||||  |||||||||| ||||||||||||||||||||| || |||||||    
T  16223307 gaagagttcgaaggggtgcacgggtaatcaaggattcgaaga-atcaaggagcacaaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 16223209  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| || |||  || ||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  16223208 gttgaagaattagtttaatttcaaggaactcttgtaaacaca-ttgt-attcaacatagttacta 16223146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 14971394 - 14971233
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||| ||||  |||||||||||  |||||||||| |||||||| ||| | | |||| |||||||||     
T  14971394 gaagagttcgaaggggtgcacgggtaatcaaggattcaaagat-tcaagaagcacgaaattcaaaggttatttgaa-tttagagaagtgcttacatagga 14971297  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||    
T  14971296 gttgaagaactaggatagtttcaaggaactcttctaattacatttgt-attcaacattattacta 14971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 15400870 - 15400709
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||| ||||  |||||||||||  |||||||||| |||||||| ||| | | |||| |||||||||     
T  15400870 gaagagttcgaaggggtgcacgggtaatcaaggattcaaagat-tcaagaagcacgaaattcaaaggttatttgaa-tttagagaagtgcttacatagga 15400773  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||    
T  15400772 gttgaagaactaggatagtttcaaggaactcttctaattacatttgt-attcaacattattacta 15400709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 9132448 - 9132348
Alignment:
Q  75 aagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttac 174  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| || |||  || ||||||||||||||||||| ||||||||| |||||||||||||||    
T  9132448 aaggttatttgaagtttgggggagtgtttacataagggttgaagaattagtttaatttcaaggaactcttgtaaacacatttgt-attcaacattgttac 9132350  T
Q  175 ta 176  Q
    ||    
T  9132349 ta 9132348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 19335633 - 19335491
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||| | |||||||||||  ||||||||||||| ||||||||||||||||| | | |||||||| ||||||||| |||| |||||| || ||||||     
T  19335633 gaagagcatcaagggttgcacatgtgattgaggatt-gaagacatcaagaagcatcaatttcaaaggttatttgaagattggaggagtgattgcatagga 19335535  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||||| |  |||||||||| |||||||| ||||||    
T  19335534 attgaagaactagggtcttttcaaggaattcttgtaaccacatt 19335491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 16775816 - 16775673
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||||||||  ||||| | |||| |||||||||| ||||||||||||||||||||| || |||||||    
T  16775816 gaagagttcgaaggggtgcacgggtaatcaaggattcgaagat-tcaaggaccaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 16775718  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| || ||||  || ||||||| ||||||||||| ||||||    
T  16775717 gttgaagaattaggtttaatttcaagaaactcttgtaaacacatt 16775673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 9653123 - 9653013
Alignment:
Q  44 gattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactct 143  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||  ||||||||||| || |||| |  ||||||||||||| ||||||||||||| |||    
T  9653123 gattcgaagacatcaagaagcaccaatttcaaaaggt-tttgaaaattgggggagtgattgcataagaattgaataactagggtagtttcaaggaattct 9653025  T
Q  144 tgtaatcacatt 155  Q
    ||| ||||||||    
T  9653024 tgtcatcacatt 9653013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 19018750 - 19018823
Alignment:
Q  27 ttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtg 100  Q
    |||||||||||||||||||||||||||| | ||||| |||| | |||||||||||||||||| |||||||||||    
T  19018750 ttgcacgggtgattgaggattcgaagacttgaagaaacaccaatttcaaagggtatttgaagattgggggagtg 19018823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 12356113 - 12356255
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||||||  |||| || | |||| ||||| ||||||||| ||||| |||||  | ||||||     
T  12356113 gaagagcttcaagtgtt-caccggtgattgaggattcgaagacatttagaaacagcaaatttaaaggttatttgaagattgggagagtgactgcatagga 12356211  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||  | ||||||||||||| |||||||||||||||    
T  12356212 attgaagaactgtggtagtttcaaggaattcttgtaatcacatt 12356255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 1376442 - 1376542
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| |||||||||| ||||||||||||||| || || || ||||||||||||| || ||||  || ||||||||||||||||||| |||||    
T  1376442 tcaaggagcaccaaattcaaaggttatttgaagtttgggagaatgtttgcataggggttgaagaattaggtttaatttcaaggaactcttgtaaacacat 1376541  T
Q  155 t 155  Q
    |    
T  1376542 t 1376542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 6486243 - 6486330
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtg 100  Q
    ||||||||| |||| ||||||| |||| ||||||||||||||| | ||||| |||  | |||||| ||||||||||| |||||||||||    
T  6486243 gaagagcttcaaggattgcacgagtgactgaggattcgaagacttgaagaaacactaatttcaaa-ggtatttgaagattgggggagtg 6486330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 9990886 - 9990786
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggat-agtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| ||||||| || || ||| |||||||| ||||| || ||| ||||||||| || |||| | | ||||||||||||||||||| |||||    
T  9990886 tcaaggagcaccaaattcaagggttacttggagtttgggagagtgtttgcatgggggttgaagaattaggtttaatttcaaggaactcttgtaaacacat 9990787  T
Q  155 t 155  Q
    |    
T  9990786 t 9990786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 21853028 - 21852969
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||| ||||||||   ||||||||||| ||||||| |||||||||| |||||||    
T  21853028 agggttaatggtgctttacctcctgtaatataggtcatttttggttttccctcctgtaaa 21852969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 1263785 - 1263843
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| |||||||| | |||||||||||||||||||  ||||||||  |||||||    
T  1263785 gggttaatggtgctttaccccctgtaatatagatcattttttgttttcccccctgtaaa 1263843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 11347214 - 11347152
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaa 117  Q
    ||||| |||||| ||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  11347214 tcaaggagcaccaaattcaaggggtacttgaagtttgggggagtgttttacataggagttgaa 11347152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 15108090 - 15108146
Alignment:
Q  179 gttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||| |||||||| | ||||||||||| ||||||| ||||||| || |||||||    
T  15108090 gttaatggtgctttaccccctgtaatataggtcatttttggttttctctcctgtaaa 15108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 24698013 - 24697845
Alignment:
Q  8 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacat 107  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24698013 catcgaagagcttgaagggttgcatgggtgattgacgattcgaagacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacat 24697914  T
Q  108 aggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697913 aggggttgaagaactagggtagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 24697845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 24507748 - 24507912
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||||||||||| ||||||||||   ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  24507748 gaagagcttgaaggattgcacgggtatctgaggattcaaagacatcaagaagcaccaaattcaaagggtatttgaagtttgagggagtggttacataggg 24507847  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24507848 gttgaagaaccaggatagttttaaggaactcttgtaatcacatttgtaattcaacattgttacta 24507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 25921963 - 25922126
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||  ||||||    
T  25921963 gaagagtttgaagggttgcacgggtgattgagcattcaaagacatcaagaagcaccaaattcaaaggttatttgaagtttgagggagtggttttataggg 25922062  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25922063 gttgaagaactagaatagtttcaaggaactcttgtaatcacatttgt-attcaacattgttacta 25922126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 42369130 - 42368970
Alignment:
Q  8 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacat 107  Q
    |||||||||||| ||| |||| |||| ||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||| ||    
T  42369130 catcgaagagctcgaaaggtttcacgagtgattgagaattcgaagacaacaagaagcacaaaattcaaagggtatttgaagtttgggggagtgtttatat 42369031  T
Q  108 aggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacatt 169  Q
    | |||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  42369030 aagggttgaagaactagggtagcttcaaggaactcttgtaatcaca-ttgtaattcaacatt 42368970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 1343682 - 1343530
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    ||||||||| | |||||||||||||||  |||||||||||||||||| |||||||||| |||||||| |||| ||||||| ||||||||  |||||| ||    
T  1343682 gaagggttgtatgggtgattgaggatttaaagacatcaagaagcaccaaattcaaaggttatttgaattttgtgggagtgtttacatagaagttgaagaa 1343583  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttac 174  Q
    ||| |||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  1343582 ctaagatagttttaaggaactcttgtaatcacatttgt-attcaagattgttac 1343530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 16974039 - 16974137
Alignment:
Q  78 ggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  16974039 ggtatttgaagtttgggggagtggttacaatggggttgaagaactatgatagtttaaaggaactcttgtaatcacatttgtaattcaacattattacta 16974137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 20246126 - 20246237
Alignment:
Q  62 agcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagga-tagtttcaaggaactcttgtaatcacatttgtaa 160  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||   |||||||| |||||||| |||||||||||||||||||||||||||||| | |    
T  20246126 agcaccaaattcaaaggttatttgaagtttgggggagtgtttaca---gggttgaagaactaggattagtttcaaggaactcttgtaatcacatttat-a 20246221  T
Q  161 ttcaacattgttacta 176  Q
    |||||| |||||||||    
T  20246222 ttcaactttgttacta 20246237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 4831331 - 4831169
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||| ||| | | ||||||||||||  ||||| | |||| |||||||||| ||||||||||||||  ||||| |||||||||     
T  4831331 gaagagttcgaaggggtgcacaggtaaataaggattcgaagat-tcaaggaacaccaaattcaaaggttatttgaagtttggaagagtgtttacataggc 4831233  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||   ||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  4831232 gttgaagaactattttagtttcaacgaactcttgtaatcacatttgt-attcaacatttttacta 4831169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 13885773 - 13885891
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||| || ||||||||||||| || |||  || ||||||||||| ||||| | |||| |    
T  13885773 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaattagtttaatttcaaggaacccttgtgaacaca-t 13885871  T
Q  156 tgtaattcaacattgttacta 176  Q
    ||| |||||||||||||||||    
T  13885872 tgt-attcaacattgttacta 13885891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 14889579 - 14889450
Alignment:
Q  22 aagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataac 121  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| | || | |||||| |||||| ||   |||||| || ||||||  ||||| |||    
T  14889579 aagggttgcacgggtaattgaagattcgaagacatcaagaagcaccaattttagagggtagttgaagatt-atggagtgattgcataggaattgaagaac 14889481  T
Q  122 taggatagtttcaaggaactcttgtaatcac 152  Q
    || | ||||||||||||| ||||||||||||    
T  14889480 taaggtagtttcaaggaattcttgtaatcac 14889450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 13607367 - 13607210
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  |||||| |||||  ||||| |||||| |||||||||| ||||||||||||||||||||| ||| ||||||    
T  13607367 gaagagttcgaaggggtgcacgggtaatcaaggatttgaagat-tcaaggagcaccgaattcaaaggttatttgaagtttgggggagtgtttatataggg 13607269  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |       || ||| ||||||||||||||| ||||||||| |||||||||| ||||||    
T  13607268 gttgaaca-----tttaatttgaaggaactcttgtaaacacatttgt-attcaacattattacta 13607210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 14281686 - 14281790
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||||||||  ||||| | |||| |||||||||| ||||||||||||||||||||| ||||||| ||    
T  14281686 gaagagttcgaaggggtgcacgggtaatcaaggattcgaagat-tcaaggaacaccaaattcaaaggttatttgaagtttgggggagtgtttacataagg 14281784  T
Q  112 gttgaa 117  Q
    ||||||    
T  14281785 gttgaa 14281790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 8942861 - 8942915
Alignment:
Q  63 gcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaa 117  Q
    ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  8942861 gcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaa 8942915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 17261024 - 17261083
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||| |||||||| | ||||||||||| ||||||| |||||||||| |||||||    
T  17261024 agggttaatggtgctttaccccctgtaatataggtcatttttggttttccctcctgtaaa 17261083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 35434130 - 35434071
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||| |||||||| | ||||||||||| ||||||| |||||||||| |||||||    
T  35434130 agggttaatggtgctttaccccctgtaatataggtcatttttggttttccctcctgtaaa 35434071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 29853686 - 29853626
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||| | ||||||||||| || |||| |||||||||| |||||||    
T  29853686 tagggttaatggtgctttaccccctgtaatataggtcgtttttggttttccctcctgtaaa 29853626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 4847741 - 4847843
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggtt-acataggggttgaataactaggat--agtttcaaggaactcttgtaatcac 152  Q
    |||||||||||| |||| || || || ||| |||||||||||||| || ||||||| |||||| || |||| |  | ||||||||||||||||||| |||    
T  4847741 tcaagaagcaccaaatttaagggttacttggagtttgggggagtgttttacataggagttgaagaattaggttttaatttcaaggaactcttgtaaacac 4847840  T
Q  153 att 155  Q
    |||    
T  4847841 att 4847843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 4854158 - 4854264
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggtt-acataggggttgaataactaggat--agtttcaaggaactcttgtaatcac 152  Q
    |||||||||||| |||| || || || ||| |||||||||||||| || ||||||| |||||| || |||| |  | |||||||||||| |||||| |||    
T  4854158 tcaagaagcaccaaatttaagggttacttggagtttgggggagtgttttacataggagttgaagaattaggttttaatttcaaggaacttttgtaaacac 4854257  T
Q  153 atttgta 159  Q
    |||||||    
T  4854258 atttgta 4854264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 4875891 - 4875997
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggtt-acataggggttgaataactaggat--agtttcaaggaactcttgtaatcac 152  Q
    |||||||||||| |||| || || || ||| |||||||||||||| || ||||||| |||||| || |||| |  | |||||||||||| |||||| |||    
T  4875891 tcaagaagcaccaaatttaagggttacttggagtttgggggagtgttttacataggagttgaagaattaggttttaatttcaaggaacttttgtaaacac 4875990  T
Q  153 atttgta 159  Q
    |||||||    
T  4875991 atttgta 4875997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 13439628 - 13439687
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| | ||||||| | ||||||||||| |||||||||||||||| | |||||||    
T  13439628 agggttaataaagctttaccccctgtaatataggtcattttcggttttccgtcctgtaaa 13439687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 11761080 - 11761130
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| ||||||||    
T  11761080 tagggttaatggtgctttaccccctgtaatataggtcatttttggttttcc 11761130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 54012646 - 54012597
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    |||||||||| |||||||| | ||||||||||| ||||||| ||||||||    
T  54012646 agggttaatggtgctttaccccctgtaatataggtcatttttggttttcc 54012597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 1351526 - 1351478
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| ||||||    
T  1351526 tagggttaatggtgctttaccccctgtaatataggtcatttttggtttt 1351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 15486105 - 15486021
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttggggg 96  Q
    ||||||||| |||| ||||| ||||| |||||||||||||||| |  |||| |||| | ||||| || || |||||| |||||||    
T  15486105 gaagagcttcaaggattgcatgggtgtttgaggattcgaagacctggagaatcaccaatttcaagggttacttgaagattggggg 15486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 21550040 - 21549980
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| ||||||||   ||||||||||| |||||||  ||||||||| |||||||    
T  21550040 tagggttaatggtgctttaccgcctgtaatataggtcattttttgttttccctcctgtaaa 21549980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 30451590 - 30451538
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccct 227  Q
    ||||||||||  |||||||| | ||||||||||| ||||||||| ||||||||    
T  30451590 tagggttaattgtgctttaccccctgtaatataggtcattttcgattttccct 30451538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 39846639 - 39846591
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| ||||||    
T  39846639 tagggttaatggtgctttaccccctgtaatataggtcatttttggtttt 39846591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 41747501 - 41747441
Alignment:
Q  176 agggttaatgatgctttactcac-tgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||||||||||| | | |||||||||| |||||||  ||||||||| |||||||    
T  41747501 agggttaatgatgctttacccccctgtaatataggtcattttttgttttccctcctgtaaa 41747441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 26023373 - 26023536
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26023373 gaagagtttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacataggg 26023472  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||  ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  26023473 gttgacgaactaggatagtttcaaggaactcttgcaatcacatttgt-attcgacattgttacta 26023536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 29842016 - 29841862
Alignment:
Q  22 aagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataac 121  Q
    ||||| ||||| |||||||  ||||||||||| ||||| || |||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |||    
T  29842016 aaggggtgcacaggtgattatggattcgaagatatcaataaacaccaaattcaaaggttatttgaagtttgggggagtgtttatataggggttgaagaac 29841917  T
Q  122 taggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||    
T  29841916 taggatattttcaaggaactcttgtaaacacatttgtaatttaccattgttacta 29841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 17335680 - 17335526
Alignment:
Q  21 gaagggttgcacgggtga-ttgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaata 119  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||| | ||||| |||| |||||||||| ||||||||  |||||| |    
T  17335680 gaagggttgcacgggtaaattgaggatttgaagacatcaagaagcaccaaattcaaacgttatttcaagtctgggggagtgcttacatagaagttgaaga 17335581  T
Q  120 actaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttact 175  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  17335580 actaggataatttcaagaaactcttgtaatcacatttgt-attcaacattgttact 17335526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 39667079 - 39667197
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||| | | |||| ||| ||| |||||||||||| ||||||||||||||||    
T  39667079 tcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttagatatgaggtgaagaaccagggtagtttcaaggatctcttgtaatcacatt 39667178  T
Q  156 tgtaattcaacattgttact 175  Q
    ||| ||||||||||||||||    
T  39667179 tgt-attcaacattgttact 39667197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 17980342 - 17980485
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| |||| ||||  |||||||||||||||| |||||||||||||||||| | |||||| || |||||||| |||||||||||||| ||||||     
T  17980342 gaagagcttcaaggattgcttgggtgattgaggattctaagacatcaagaagcaccaatttcaaatggaatttgaagattgggggagtggttccatagga 17980441  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| | ||||  |||||| || ||| |||||||||||||||    
T  17980442 attgaagagctagagtagtttgaatgaattcttgtaatcacatt 17980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 23663108 - 23662947
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| |||||||| |||||| || ||  ||||||||||||  ||||| |||||| |||||||||| ||||||||||||||||||||| || |||||||    
T  23663108 gaagagtttgaaggggtgcacgagtaatcaaggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 23663010  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatttgtaattcaacattgttac 174  Q
    |||||| || ||||  || |||||| |||||||||||| |||||||||  ||||||||||||||    
T  23663009 gttgaaaaattaggtttaatttcaatgaactcttgtaaacacatttgt-gttcaacattgttac 23662947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 25906882 - 25906769
Alignment:
Q  62 agcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaat 161  Q
    |||||| |||||||||| |||||||||||||||||| || | |||||||||||||| || |||  || |||||| |||||||||||| ||||||||| ||    
T  25906882 agcaccaaattcaaaggttatttgaagtttgggggaatgttcacataggggttgaagaattagtttaatttcaacgaactcttgtaaacacatttgt-at 25906784  T
Q  162 tcaacattgttacta 176  Q
    |||||||||||||||    
T  25906783 tcaacattgttacta 25906769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 22684086 - 22683944
Alignment:
Q  13 aagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagggg 112  Q
    |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||  | |||||||| ||||||||| ||||||| ||  || ||||||      
T  22684086 aagaacttcaagggttgcacaggtgattgaagattcgaagacatcaagaagcactaatttcaaaggttatttgaagattgggggtgttattccataggaa 22683987  T
Q  113 ttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    ||||| || || | |||||| |||||| | |||||||||||||    
T  22683986 ttgaagaattaaggtagttttaaggaatttttgtaatcacatt 22683944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 24373766 - 24373909
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  |||||| |||||  |||||||||||| ||||||| || || ||| |||||||||||||| || |||||||    
T  24373766 gaagagttcgaaggggtgcacgggtaatcaaggatttgaagat-tcaagaagcaccaaattcaagggttaattggagtttgggggagtgtttgcataggg 24373864  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| || ||||  || ||||||||||||||||||| ||||||    
T  24373865 gttgaagaattaggtttaatttcaaggaactcttgtaaacacatt 24373909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 18595463 - 18595558
Alignment:
Q  22 aagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaa 117  Q
    ||||| ||||||||| ||| ||||| ||||||  ||||| |||||| ||||||| || || ||||||||||||||||||  ||||||||||||||||    
T  18595463 aaggggtgcacgggtaattaaggatccgaagat-tcaaggagcaccaaattcaagggttacttgaagtttgggggagtgttttacataggggttgaa 18595558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 24952116 - 24952063
Alignment:
Q  173 actagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||||||| |||||||| | ||||||||||| ||||||| |||||||||    
T  24952116 actagggttaatggtgctttaccccctgtaatataggtcatttttggttttccc 24952063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 8898297 - 8898348
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| |||||||||    
T  8898297 tagggttaatggtgctttaccctctgtaatataggtcatttttggttttccc 8898348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 14793514 - 14793463
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| |||||||||    
T  14793514 tagggttaatggtgctttaccccctgtaatataggtcatttttggttttccc 14793463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 7893983 - 7894029
Alignment:
Q  189 ctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||| || |||||||| |||||||||||||||||| |||||||    
T  7893983 ctttactccctataatataggtcattttcggttttccctcctgtaaa 7894029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 43766540 - 43766490
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| ||||||||    
T  43766540 tagggttaatggtgctttaccccctgtaatataggtcatttttggttttcc 43766490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 29640763 - 29640812
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||| |||||||| | ||||||||||| ||||||| |||||||||    
T  29640763 gggttaatggtgctttaccccctgtaatataggtcatttttggttttccc 29640812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 1366824 - 1366780
Alignment:
Q  178 ggttaatgatgctttactcactgtaatatagatcattttcggttt 222  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||    
T  1366824 ggttaatggtgctttaccccctgtaatatagatcatttttggttt 1366780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 8214618 - 8214570
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    ||||||||||| |||||||| | ||||||||||| ||||||| ||||||    
T  8214618 tagggttaatggtgctttaccccctgtaatataggtcatttttggtttt 8214570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 29949914 - 29949878
Alignment:
Q  190 tttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  29949914 tttactcactgtaatataggtcatttccggttttccc 29949878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 32845721 - 32845661
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||| | ||||||||||| |||||||  ||||||||  |||||||    
T  32845721 tagggttaatggtgctttaccccctgtaatataggtcattttttgttttcccccctgtaaa 32845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 36944289 - 36944229
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||| | ||||||||||| |||||||  ||||||||  |||||||    
T  36944289 tagggttaatggtgctttaccccctgtaatataggtcattttttgttttcccacctgtaaa 36944229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 11554478 - 11554312
Alignment:
Q  8 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||    
T  11554478 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaaattcaaagggtattttaagttgtggggagtggttacat 11554379  T
Q  108 aggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttac 174  Q
    |||||||||| ||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  11554378 aggggttgaagaaccagggtagttttaaggaactcttgtaatcacatctgtaattcaacattgttac 11554312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 15782809 - 15782963
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||| ||    
T  15782809 gaagggttgcacgggtaattgaggattcgaaaacatcaagatgcaccaaattaaaaggttatttgaagtttgggggagtgcttacataggggttgaagaa 15782908  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  15782909 ctaggatagtttcaaggaactcttgtaatcacatttgt-attaaacattgttacta 15782963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 16661330 - 16661472
Alignment:
Q  13 aagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagggg 112  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||| ||||||| | |||||||||||||| |||||       
T  16661330 aagagcttcaagggttgcacgggtgtttgaggattcgaatacatcaagaagcaccaatttcaaaggatatttgatgattgggggagtggttgcatagtaa 16661429  T
Q  113 ttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    ||||| | ||||| |||||| |||||| |||||||||||||||    
T  16661430 ttgaagagctagggtagtttgaaggaattcttgtaatcacatt 16661472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 15699502 - 15699349
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    |||||| |||| |||| ||  ||||||||||||  |||||||||||| |||||||| | ||||||||||||  || |||| ||||||||| |||||| ||    
T  15699502 gaaggggtgcatgggtaatcaaggattcgaagat-tcaagaagcaccaaattcaaaagttatttgaagtttaaggaagtgcttacataggagttgaagaa 15699404  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  15699403 ctaggattgttccaaggaactcttgtaatcacatttgt-attcaacattgttacta 15699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 20323911 - 20323768
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| |||||||||||  | ||||||||||||||||||||||||||||||| | | |||||| ||||||||| ||||||||||| ||  |||||     
T  20323911 gaagagcttcaagggttgcacaagagattgaggattcgaagacatcaagaagcaccaattgcaaaggttatttgaagattgggggagtgattgtatagga 20323812  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||| | ||||||||||||| |||||||||||||||    
T  20323811 attgaaaaactaaggtagtttcaaggaattcttgtaatcacatt 20323768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 27919834 - 27919691
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | ||||||||||||||||  |  ||||||||||||  ||||| |||||| |||||||||| ||||||||||||||||||||| || |||||||    
T  27919834 gaagagttcgaagggttgcacgggtattcaaggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 27919736  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| || ||||  || |||||||||| |||||||| ||||||    
T  27919735 gttgaagaattaggtttaatttcaaggaattcttgtaaacacatt 27919691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 13524148 - 13524038
Alignment:
Q  44 gattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactct 143  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||  ||||||||||| || |||| |  ||||||||||||| ||||||||||||| |||    
T  13524148 gattcgaagacatcaagaagcaccaatttcaaaaggt-tttgaaaattgggggagtgattgcataagaattgaataactagggtagtttcaaggaattct 13524050  T
Q  144 tgtaatcacatt 155  Q
    ||| ||||||||    
T  13524049 tgtcatcacatt 13524038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 19584487 - 19584326
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| |||| |||| ||  ||||||||||||  ||||| |||||| ||||| |||| ||||||| |||||||||| || || |||||||    
T  19584487 gaagagttcgaaggggtgcaagggtaatcaaggattcgaagat-tcaaggagcaccaaattcgaaggttatttgatgtttgggggaatgtttgcataggg 19584389  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatttgtaattcaacattgttact 175  Q
    |||||  || ||||  || ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  19584388 gttgacgaattaggtttaatttcaaggaactcttgtaaacaca-ttgt-attcaacattgttact 19584326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 16835995 - 16835864
Alignment:
Q  42 aggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaac 140  Q
    ||||||||||||  ||||| |||||| |||||||||| ||||||||||||| ||||||| || || | | |||||| || ||||  || |||||||||||    
T  16835995 aggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaagtttgagggagtgtttgcacatgagttgaagaattaggtttaatttcaaggaac 16835897  T
Q  141 tcttgtaatcacatttgtaattcaacattgttact 175  Q
    |||||||| |||| |||| ||||||||||||||||    
T  16835896 tcttgtaaacaca-ttgt-attcaacattgttact 16835864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 16586720 - 16586863
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||| ||||||  ||||| |||||| |||||||  | || ||| |||||||||||||| || |||||||    
T  16586720 gaagagttcgaaggggtgcacgggtaatcaaggatccgaagat-tcaaggagcaccaaattcaatagttacttggagtttgggggagtgttttcataggg 16586818  T
Q  112 gttgaataact-aggatagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| || | ||  || ||||||||||||||||||| ||||||    
T  16586819 gttgaagaattaagtttaatttcaaggaactcttgtaaacacatt 16586863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 26144157 - 26144216
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||| |||||||| | ||||||||||| |||||||  ||||||||| |||||||    
T  26144157 agggttaatggtgctttaccccctgtaatataggtcattttttgttttccctcctgtaaa 26144216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 35370446 - 35370395
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccct 227  Q
    |||||||||| |||||||| | ||||||||||| ||||||| ||||||||||    
T  35370446 agggttaatggtgctttaccccctgtaatataggtcatttttggttttccct 35370395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 36405649 - 36405708
Alignment:
Q  167 attgttactagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    |||||| |||||||||||| |||||||| | ||||||||||| |||||||  ||||||||    
T  36405649 attgtttctagggttaatggtgctttaccccctgtaatataggtcatttttagttttccc 36405708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 5985186 - 5985149
Alignment:
Q  138 aactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  5985186 aactcttgtaatcacatttgt-attcaacattgttacta 5985149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 35904920 - 35904870
Alignment:
Q  166 cattgttactagggttaatgatgctttactcactgtaatatagatcatttt 216  Q
    |||| ||| ||||||||||| |||||||||| ||||||||||| |||||||    
T  35904920 cattattattagggttaatggtgctttactccctgtaatataggtcatttt 35904870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 47858487 - 47858437
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    |||||||||| |||||||| | ||||||||||| |||||| ||||||||||    
T  47858487 agggttaatggtgctttaccccctgtaatataggtcatttccggttttccc 47858437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 50719966 - 50719908
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||  |||||||| | || |||||||| |||||||||||||||||| |||||||    
T  50719966 gggttaatagtgctttaccccctataatataggtcattttcggttttccctcctgtaaa 50719908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 22272951 - 22272988
Alignment:
Q  198 ctgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  22272951 ctgtaatataggtcattttcggttttccctcctgtaaa 22272988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 26144404 - 26144355
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||| |||||||| | |||||||||||||||||||  ||||||||    
T  26144404 gggttaatggtgctttaccccctgtaatatagatcattttttgttttccc 26144355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33294932 - 33294989
Alignment:
Q  168 ttgttactagggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    |||||| ||||||||||| |||||||| | ||||||||||| ||||||  ||||||||    
T  33294932 ttgttagtagggttaatggtgctttaccccctgtaatataggtcatttctggttttcc 33294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 39044947 - 39045048
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcaca 153  Q
    |||||||||||| ||||||| | ||| ||||||||||||||| ||  |||||||||  ||||| || ||||  || |||||||||| |||||||| ||||    
T  39044947 tcaagaagcaccaaattcaaggagtacttgaagtttgggggaatgttttacataggaattgaaaaattaggtttaatttcaaggaattcttgtaaacaca 39045046  T
Q  154 tt 155  Q
    ||    
T  39045047 tt 39045048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 41325567 - 41325530
Alignment:
Q  198 ctgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  41325567 ctgtaatatagatcattttcggttttacctcctgtaaa 41325530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 4812636 - 4812584
Alignment:
Q  175 tagggttaatgatgctttactcac-tgtaatatagatcattttcggttttccc 226  Q
    ||||||||||| |||||||| | | |||||||||| |||||||||||||||||    
T  4812636 tagggttaatggtgctttacccccctgtaatataggtcattttcggttttccc 4812584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 6439183 - 6439231
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    ||||||||||  |||||||| | ||||||||||| ||||||||||||||    
T  6439183 tagggttaatagtgctttaccccctgtaatataggtcattttcggtttt 6439231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 6439480 - 6439432
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    |||||||| || |||||||| | ||||||||||| ||||||||||||||    
T  6439480 tagggttattggtgctttaccccctgtaatataggtcattttcggtttt 6439432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 10492378 - 10492521
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||| ||||  ||||| ||||||  |||| | || || ||| ||||||| |||||| || |||||||    
T  10492378 gaagagttcgaaggggtgcacgggtaatcaaggattcaaagat-tcaaggagcaccagattcgagggttacttggagtttggtggagtgtttgcataggg 10492476  T
Q  112 gttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| || ||||  || ||||||| ||||||||||| ||||||    
T  10492477 gttgaagaattaggtttaatttcaagaaactcttgtaaacacatt 10492521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 12878673 - 12878733
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||| | ||||||||||| |||||||  ||||||||  |||||||    
T  12878673 tagggttaatggtgctttaccccctgtaatataggtcattttttgttttcccccctgtaaa 12878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 35804125 - 35804077
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    ||||||||||| |||||||| | ||||||||||| |||||||| |||||    
T  35804125 tagggttaatggtgctttacaccctgtaatataggtcattttctgtttt 35804077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 47629255 - 47629207
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttc 224  Q
    ||||||||||||| ||||| | || |||||||| |||||||||||||||    
T  47629255 agggttaatgatgttttaccccctataatataggtcattttcggttttc 47629207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 24511266 - 24511102
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||| || |||||||||||  ||||||||||||||||||    
T  24511266 gaagagcttgaagggttgcatgggtacttgaggattcgaagacatcaagaagcaccaaattcaaaaggcatttgaagtttaagggagtggttacataggg 24511167  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  24511166 gttgaagaactaggatagtttaaaggaactcttgtaatcacatttgttattcaacattgttacta 24511102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 19527162 - 19527324
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |     
T  19527162 gaagagttcgaagggttgcacgggtaattgaggattcgaagacatcaaggagcaccaaattcaaagggtatttgaagtttgggggagtggttacata-gc 19527260  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19527261 gttgaagaactaggatagtttcaaggaactctcgtaatcacatttgt-attcaacattgttacta 19527324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 18958356 - 18958523
Alignment:
Q  8 catcgaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacat 107  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  18958356 catcgaagagcttgaaggggtgcacgggtactt-aggattcgaagacatcaagaagcaccaaattcaaaggttatttgaagtttaggggagtagttacat 18958454  T
Q  108 aggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
     ||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  18958455 gggggttggagaactacgatagtttcaaggaactcttgtaatcatatttgtaattcaactttgctacta 18958523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 25917171 - 25917008
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||| ||||||||| |||| ||||||| ||    
T  25917171 gaagagttcgaagggttgcacgggtgattgaggattcgaagacatcaagaagcaacaaattcaaagcttatttggagtttggggaagtgcttacatatgg 25917072  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||| || ||||||||||||||| ||||||||||| |||||||||||  |||||| ||||||||||    
T  25917071 gttaaagaactaggatagtttcgaggaactcttgaaatcacatttg-cattcaatattgttacta 25917008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 24660749 - 24660881
Alignment:
Q  42 aggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaact 141  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  24660749 aggattcgaagat-tcaagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacataggagttgaagaactaggatagtttcaaggaact 24660847  T
Q  142 cttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||||||||||||| |||||||||| ||||||    
T  24660848 cttgtaatcacatttgt-attcaacattattacta 24660881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 25087348 - 25087186
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| |||||||| ||||| ||| ||  ||||||||||||  | ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  25087348 gaagagtttgaaggggtgcacaggtaatcaaggattcgaagattt-aaggagcaccgaattcaaaggttatttgaagtttgggggagtgcttacataggg 25087250  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||  || |||||||||||||||||||||||||||| |||||||||||||||    
T  25087249 gttgaagaactaggatttttccaaggaactcttgtaatcacatttgtaa-tcaacattgttacta 25087186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 25145317 - 25145155
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| |||||||| ||||| ||| ||  ||||||||||||  | ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  25145317 gaagagtttgaaggggtgcacaggtaatcaaggattcgaagattt-aaggagcaccgaattcaaaggttatttgaagtttgggggagtgcttacataggg 25145219  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||  || |||||||||||||||||||||||||||| |||||||||||||||    
T  25145218 gttgaagaactaggatttttccaaggaactcttgtaatcacatttgtaa-tcaacattgttacta 25145155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 20972193 - 20972331
Alignment:
Q  34 ggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttc 133  Q
    ||||||| |||||| ||||||||  ||||||| | |||||||||| ||||||||||||| ||||||  |||||||||||||||| ||||| ||||||||     
T  20972193 ggtgatttaggattagaagacatatagaagcaacaaattcaaaggttatttgaagtttgagggagtacttacataggggttgaagaactaagatagtttt 20972292  T
Q  134 aaggaactcttgtaatcacatttgtaattcaacattgtta 173  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  20972293 aaggaactcttgtaatcacattt-ttattcaacattgtta 20972331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 23987455 - 23987335
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagga-tagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| |||||||| | ||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||||    
T  23987455 tcaaggagcaccaaattcaaaagttatttgaagtttgggggagtgtttacataggggttgaagaactagaattagtttcaaggaactcttgtaatcacat 23987356  T
Q  155 ttgtaattcaacattgttacta 176  Q
    ||||  ||||||||| ||||||    
T  23987355 ttgt-tttcaacatttttacta 23987335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 29831371 - 29831244
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||   |||||||||||||||||| || ||||||||||| ||||||     
T  29831371 gaagagcttcaagggttgcacaggtgattcaggattcgaagacataaagaagcaccagtttcaaagggtatttgaagattaggggagtggttgcatagga 29831272  T
Q  112 gttgaataactaggatagtttcaaggaa 139  Q
     ||||| ||||| | |||||||||||||    
T  29831271 attgaagaactaaggtagtttcaaggaa 29831244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 27736043 - 27735900
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| ||||||| ||||||| ||||| ||||| |||||||||||||||||| | |||||||| ||||||||| || |||||||| || |||| |     
T  27736043 gaagaacttcaagggtttcacgggttattgaagattcaaagacatcaagaagcaccaatttcaaaggttatttgaagattaggggagtgattgcatatga 27735944  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||||| |||||||||| || |||||||||||||||    
T  27735943 attgaagaactagggtagtttcaagaaattcttgtaatcacatt 27735900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 22847169 - 22847306
Alignment:
Q  22 aagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataac 121  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||| | |||||| ||| ||||||| ||||||||||| || ||| ||  ||||| ||     
T  22847169 aagggttgcacgggtaattgaagattcgaagatatcaagaagcaccgatttcaaaaggt-tttgaagattgggggagtgattgcattggaattgaagaat 22847267  T
Q  122 taggatagtttcaaggaactcttgtaatcacatttgtaat 161  Q
    |||| ||||||||||||| |||||||||||| ||||||||    
T  22847268 tagggtagtttcaaggaattcttgtaatcac-tttgtaat 22847306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 24129489 - 24129641
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    |||||| ||||||||| ||  |||||| |||||  | ||| |||||| |||||||||| ||||||||||||||||||||| || ||||||||||||  ||    
T  24129489 gaaggggtgcacgggtaatcaaggatttgaagattt-aaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgacaaa 24129587  T
Q  121 ctaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttact 175  Q
     |||  || ||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  24129588 ttagtttaatttcaagaaactcttgtaaacacatttgt-attcaacattgttact 24129641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 23274305 - 23274163
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||||||||||| || ||||| |||||||||||||||||||||| | | ||| || ||| ||||||| || |||||||| || ||||||     
T  23274305 gaagaacttcaagggttgcacgagtaattgaagattcgaagacatcaagaagcatcaatttcgaaaggt-tttgaagatttggggagtgattgcatagga 23274207  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||||| ||||||||||||| ||||||| |||||||    
T  23274206 attgaagaactagggtagtttcaaggaattcttgtattcacatt 23274163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 16739689 - 16739525
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagg- 110  Q
    |||||| | |||||| ||||||||| ||  | ||||||||||  ||||| |||||| |||||||||| |||||||||||||||| |||  ||  |||||     
T  16739689 gaagagttcgaaggggtgcacgggtaatcaaagattcgaagat-tcaaggagcaccaaattcaaaggttatttgaagtttggggaagtctttgtataggt 16739591  T
Q  111 -ggttgaataactaggat-agtttcaaggaactcttgtaatcacatttgtaattcaacattgttact 175  Q
     ||||||| || |||| | | ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  16739590 gggttgaagaattaggtttaatttcaaggaactcttgtaaacacatttgt-attcaacattgttact 16739525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 24670295 - 24670426
Alignment:
Q  43 ggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaact 141  Q
    |||||||||||  ||||| |||||| |||||||||| |||||||| ||||||||| || ||  |||||||||||| || ||||  || ||||||||||||    
T  24670295 ggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaactttgggggaatgtttgaataggggttgaagaattaggtttaatttcaaggaact 24670393  T
Q  142 cttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| |||| |||| |||||||||||||||||    
T  24670394 cttgtaaacaca-ttgt-attcaacattgttacta 24670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 24707070 - 24707201
Alignment:
Q  43 ggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaact 141  Q
    |||||||||||  ||||| |||||| |||||||||| |||||||| ||||||||| || ||  |||||||||||| || ||||  || ||||||||||||    
T  24707070 ggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaactttgggggaatgtttgaataggggttgaagaattaggtttaatttcaaggaact 24707168  T
Q  142 cttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| |||| |||| |||||||||||||||||    
T  24707169 cttgtaaacaca-ttgt-attcaacattgttacta 24707201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 24740064 - 24740195
Alignment:
Q  43 ggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaact 141  Q
    |||||||||||  ||||| |||||| |||||||||| |||||||| ||||||||| || ||  |||||||||||| || ||||  || ||||||||||||    
T  24740064 ggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaactttgggggaatgtttgaataggggttgaagaattaggtttaatttcaaggaact 24740162  T
Q  142 cttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| |||| |||| |||||||||||||||||    
T  24740163 cttgtaaacaca-ttgt-attcaacattgttacta 24740195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 24752833 - 24752964
Alignment:
Q  43 ggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaact 141  Q
    |||||||||||  ||||| |||||| |||||||||| |||||||| ||||||||| || ||  |||||||||||| || ||||  || ||||||||||||    
T  24752833 ggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaactttgggggaatgtttgaataggggttgaagaattaggtttaatttcaaggaact 24752931  T
Q  142 cttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||| |||| |||| |||||||||||||||||    
T  24752932 cttgtaaacaca-ttgt-attcaacattgttacta 24752964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 20057354 - 20057278
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaag 88  Q
    ||||||||| |||| ||||| |||||||||||||||||||||| | ||||| |||| | ||||| ||||| ||||||    
T  20057354 gaagagcttcaaggattgcatgggtgattgaggattcgaagacttgaagaaacaccaatttcaaggggtacttgaag 20057278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 5661933 - 5661882
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    ||||||||||| |||||||| | |||||||||||||||||||  ||||||||    
T  5661933 tagggttaatggtgctttaccccctgtaatatagatcattttttgttttccc 5661882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 13012435 - 13012493
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| |||||||| | ||||||||||| |||||||  ||||||||| |||||||    
T  13012435 gggttaatggtgctttaccccctgtaatataggtcattttttgttttccctcctgtaaa 13012493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 13083845 - 13083903
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| |||||||| | ||||||||||| |||||||  ||||||||| |||||||    
T  13083845 gggttaatggtgctttaccccctgtaatataggtcattttttgttttccctcctgtaaa 13083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 16700954 - 16701070
Alignment:
Q  38 attgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaagg 137  Q
    ||||| |||| |||||||||||||||| |  | |||||||||| ||||||| ||| ||||||  || ||||||  ||||| || |||| ||||||||||     
T  16700954 attgaagatttgaagacatcaagaagcccaaatttcaaagggt-tttgaagattgagggagtaattgcataggcattgaagaaatagggtagtttcaaga 16701052  T
Q  138 aactcttgtaatcacatt 155  Q
    || | || ||||||||||    
T  16701053 aattattctaatcacatt 16701070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 18935092 - 18934944
Alignment:
Q  27 ttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagga 126  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||| || |||||    
T  18935092 ttgcacaggtgattgaggattcgaagacatcgagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacatgggggttgaagaagtagga 18934993  T
Q  127 tagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  18934992 tagtttcaaggaactcttgtaatcacatttct-attcaacattgttacta 18934944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 22045501 - 22045664
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||||| || |||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||| ||||||||||    
T  22045501 gaagagttcgaagggtttcatgggtgattaaggattcaaagacatcaagaagcaccaaattcaaaggttatttaaagattgggggagtgtttacataggg 22045600  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  22045601 gttgaagaactaggatagttttaaggaactctagtaatcacatttgt-attcaacattgttacta 22045664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 17317500 - 17317356
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| || ||||||     
T  17317500 gaagaacttcaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgcatagga 17317401  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacattt 156  Q
     ||||| ||||||| ||||||||||||| |||||||| |||||||    
T  17317400 attgaagaactagggtagtttcaaggaattcttgtaaacacattt 17317356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 25221074 - 25221193
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    |||||||||||| |||||||||  ||||||||||||||||||||  ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  25221074 tcaagaagcaccaaattcaaagattatttgaagtttgggggagtccttacataggagttgaagaactaggatagtttaaaggaactcttgtaatcacatt 25221173  T
Q  156 tgtaattcaacattgttacta 176  Q
    ||| |||||||||| ||||||    
T  25221174 tgt-attcaacattattacta 25221193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 29984212 - 29984056
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| ||||||||||| ||||||||| ||||| |||||||||||||||||| | |||||||  ||||||||| ||||||||||| || ||||||     
T  29984212 gaagaacttcaagggttgcacaggtgattgaagattcaaagacatcaagaagcaccaatttcaaagcttatttgaagattgggggagtgattgcatagga 29984113  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacatt 169  Q
      |||| || |||| ||||||||||||| ||||||||||||| |||||||| ||||||    
T  29984112 actgaagaattagggtagtttcaaggaattcttgtaatcaca-ttgtaattaaacatt 29984056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 25380205 - 25380301
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacata 108  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||||||| ||||    
T  25380205 gaagagattcaaggattgcacgggtgattgaggattcgaagacatcaagaagcaccaatttcaaagggtatttgaagattgagggagtggttgcata 25380301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 19957517 - 19957352
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| |||||||  ||||||||| ||  |||||||||| |  ||||| |||||| |||||||||| ||||||||||||||||||||| || |||||||    
T  19957517 gaagagtttgaaggagtgcacgggtaatcaaggattcgaatat-tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 19957419  T
Q  112 gttgaataactag-gatagtttcaaggaactcttgtaatc--acatttgtaattcaacattgttacta 176  Q
    |||||| || |||   || ||||||||||||||||||| |  |||||||| ||||||||| |||||||    
T  19957418 gttgaagaattagttttaatttcaaggaactcttgtaaacatacatttgt-attcaacatggttacta 19957352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 21982829 - 21982942
Alignment:
Q  64 cacccaattcaaagggtatttgaagtttgggggagtggttacataggggttga--ataactaggatagtttcaaggaactcttgtaatcacatttgtaat 161  Q
    |||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |  | || |||  || ||||||||||||||||||| ||||||||| ||    
T  21982829 caccaaattcaaaggttatttaaagtttgggggagtgtttacataggggttaaagagaattagtttaatttcaaggaactcttgtaaacacatttgt-at 21982927  T
Q  162 tcaacattgttacta 176  Q
    |||||||||||||||    
T  21982928 tcaacattgttacta 21982942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 25974499 - 25974399
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||  || ||||  || ||||||||||||||||||| |||||    
T  25974499 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttacataagggttgatgaattaggtttaatttcaaggaactcttgtaaacacat 25974400  T
Q  155 t 155  Q
    |    
T  25974399 t 25974399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 20405815 - 20405682
Alignment:
Q  22 aagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataac 121  Q
    ||||||||||| ||||||||   ||||| |||||||| |||||||  | |||||||| ||||||||| ||||||||||  || ||||||   |||  |||    
T  20405815 aagggttgcacaggtgattgcatattcgtagacatcatgaagcacaaatttcaaaggttatttgaagattgggggagtaattgcataggaactgacgaac 20405716  T
Q  122 taggatagtttcaaggaactcttgtaatcacatt 155  Q
    || | ||||||||||||| |||||||||||||||    
T  20405715 tatggtagtttcaaggaattcttgtaatcacatt 20405682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 23510875 - 23510802
Alignment:
Q  27 ttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtg 100  Q
    ||||||||||||||| |||||||||||| | ||||| |||| | |||||||||||||||||| |||||||||||    
T  23510875 ttgcacgggtgattgtggattcgaagacttgaagaaacaccaatttcaaagggtatttgaaggttgggggagtg 23510802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 16153548 - 16153606
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggtt 114  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  16153548 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttacataggggtt 16153606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 15546157 - 15546294
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||| ||||| |||||||||| ||||  |||||||||| ||||||| | |||||||| ||||||||| |||||  |||| || ||||||     
T  15546157 gaagaacttcaaggtttgcatgggtgattgaagattgaaagacatcaataagcaccgatttcaaaggttatttgaagcttggga-agtgattgcatagga 15546255  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcac 152  Q
     ||||| |||  || ||||||||||||| ||||||||||||    
T  15546256 attgaagaac--gggtagtttcaaggaattcttgtaatcac 15546294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 15851806 - 15851730
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaag 88  Q
    ||||||||| | ||||||||||||||||| | ||||| ||||| |||||||||||| | ||||||||||||| ||||    
T  15851806 gaagagcttcatgggttgcacgggtgattcacgattcaaagacttcaagaagcaccaatttcaaagggtattagaag 15851730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 22852734 - 22852638
Alignment:
Q  62 agcacccaattcaaagggtatttgaagtttgggggagtggt-tacataggggttgaataactagg--atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| ||||||| ||||| |||||||||||||||||| | |||||||| |||||| || ||||   || ||||||||||||||||||| ||||||    
T  22852734 agcaccaaattcaaggggtacttgaagtttgggggagtgttctacataggagttgaagaattaggttttaatttcaaggaactcttgtaaacacatt 22852638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 13333000 - 13332916
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttggggg 96  Q
    ||||||||| |||  ||||| |||||||||| |||| |||||| | ||||| |||| | |||||||||||||||||| |||||||    
T  13333000 gaagagcttcaagtattgcatgggtgattgaagatttgaagacttgaagaaacaccaatttcaaagggtatttgaagattggggg 13332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 19818538 - 19818443
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaataactagg--atagtttcaaggaactcttgtaa 148  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||| |||||| || ||||   || ||| |||||||||||||||    
T  19818538 tcaagaagcaccaaattcaaggggtacttgaagtttgggggagtgttttacataggagttgaagaattaggttttaatttgaaggaactcttgtaa 19818443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 24592341 - 24592253
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtg 100  Q
    ||||||||| |||| ||  | |||||||||| ||||| ||||| | ||||| |||| | |||||||||||||||||| |||||||||||    
T  24592341 gaagagcttcaaggattttatgggtgattgaagattcaaagactttaagaaacaccaatttcaaagggtatttgaagattgggggagtg 24592253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 16969558 - 16969671
Alignment:
Q  42 aggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaac 140  Q
    ||||||||||||  ||||| |||||  |||| ||||| ||||||||||||||||||||| || | ||||||||||  |  ||||  || |||||||||||    
T  16969558 aggattcgaagat-tcaaggagcacaaaatttaaaggttatttgaagtttgggggagtgtttgcctaggggttgataagttaggtttaatttcaaggaac 16969656  T
Q  141 tcttgtaatcacatt 155  Q
    |||||||| ||||||    
T  16969657 tcttgtaaacacatt 16969671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 17199929 - 17199829
Alignment:
Q  54 catcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcaca 153  Q
    |||||||||||| | | |||||| ||| ||||||| |||| |||||| || ||||||  ||||| |||||   ||||||||||||| |||||||||||||    
T  17199929 catcaagaagcatcaatttcaaaaggt-tttgaagattggcggagtgattgcataggaattgaagaactattgtagtttcaaggaattcttgtaatcaca 17199831  T
Q  154 tt 155  Q
    ||    
T  17199830 tt 17199829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 16555588 - 16555528
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||||| ||||||||||| |||||||  ||||||||  |||||||    
T  16555588 tagggttaatggtgctttactccctgtaatataggtcattttttgttttcccccctgtaaa 16555528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 23478296 - 23478390
Alignment:
Q  62 agcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    |||||| ||||||| || || ||| |||||||||||||| || |||||||  ||||||| ||||  || |||||||||||| |||||| ||||||    
T  23478296 agcaccaaattcaagggttacttggagtttgggggagtgtttgcatagggaatgaataattaggtttaatttcaaggaacttttgtaaacacatt 23478390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 16555320 - 16555364
Alignment:
Q  172 tactagggttaatgatgctttactcactgtaatatagatcatttt 216  Q
    |||||||||||||| |||||||| | ||||||||||| |||||||    
T  16555320 tactagggttaatggtgctttaccccctgtaatataggtcatttt 16555364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 35384513 - 35384465
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    ||||||||| |||||||| | ||||||||||| ||||||| ||||||||    
T  35384513 gggttaatggtgctttaccccctgtaatataggtcatttttggttttcc 35384465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 39160589 - 39160541
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    ||||||||| |||||||| | ||||||||||| ||||||| ||||||||    
T  39160589 gggttaatggtgctttaccccctgtaatataggtcatttttggttttcc 39160541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 39657271 - 39657311
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattt 215  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  39657271 tagggttaatggtgctttaccccctgtaatatagatcattt 39657311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 47979811 - 47979858
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttcc 225  Q
    |||||||| ||| ||||| | ||||||||||||||||||||||||||||    
T  47979811 gggttaataatgttttaccc-ctgtaatatagatcattttcggttttcc 47979858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 4150 - 4312
Alignment:
Q  12 gaagagcttgaagggttgcacgggtg-attgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagg 110  Q
    |||||| | |||||||||||| |||  |||||||||||||||||| || |||||||| ||||| |||  ||||||||||||||||||||| ||||  |||    
T  4150 gaagagttcgaagggttgcacaggtatattgaggattcgaagacaccatgaagcaccaaattccaagtttatttgaagtttgggggagtgcttacgaagg 4249  T
Q  111 ggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttac 174  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  4250 ggttgaagaaataggatagttccaaggaactcttgtaataacatttgt-attcaacattgttac 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 20403204 - 20403366
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||||| |||||| |||| |||| ||  |||||||||| |  |||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||    
T  20403204 gaagagctcgaaggggtgcatgggtaatcaaggattcgaaaat-tcaagaagcaccaaattcaaaggttatttgaagtttggaggagtgtttacataggg 20403302  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| ||||||  ||| |||| ||||||||| |||||||||||||  ||||||||||||||||    
T  20403303 gttgaagaactagtttagcttcatggaactcttttaatcacatttgt-gttcaacattgttacta 20403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 10747115 - 10747234
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
    ||||| |||||| |||||||||| || |||||||||||||||||| |||||||||||||||| || |||  || ||||||||||||||||||| ||||||    
T  10747115 tcaaggagcaccgaattcaaaggttagttgaagtttgggggagtgtttacataggggttgaagaattagtttaatttcaaggaactcttgtaaacacatt 10747214  T
Q  156 tgtaattcaacattgttacta 176  Q
    ||| |||||||||||||||||    
T  10747215 tgt-attcaacattgttacta 10747234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 9338118 - 9338031
Alignment:
Q  89 tttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||| |||||    
T  9338118 tttgggggagtggttacattggggttgaagaactaggatagtttaagggaactcgtgtaatcacatttgtgattcaacattgctacta 9338031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 25929591 - 25929700
Alignment:
Q  24 gggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataacta 123  Q
    ||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||  ||||||||||| || |||| |  ||||| |||||    
T  25929591 gggttgcacggatgattgaggattcgaagacatcaagaagcatcgagttcaaagggtatttgaaaattgggggagtgattgcatatgaattgaagaacta 25929690  T
Q  124 ggatagtttc 133  Q
    || |||||||    
T  25929691 gggtagtttc 25929700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 17583153 - 17583049
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| |||||||||  |  ||||||||||||  ||||| |||||  |||||||||| ||||||||||||||||||||| || |||||||    
T  17583153 gaagagttcgaaggggtgcacgggtattcaaggattcgaagat-tcaaggagcacgaaattcaaaggttatttgaagtttgggggagtgtttgcataggg 17583055  T
Q  112 gttgaa 117  Q
    ||||||    
T  17583054 gttgaa 17583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 16598665 - 16598747
Alignment:
Q  71 ttcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatcaca 153  Q
    |||||||| ||||||||| ||||||||||| || ||||||  ||||| ||||||| | ||||||||||| || ||||||||||    
T  16598665 ttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactagggtcgtttcaaggaattcatgtaatcaca 16598747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 18565190 - 18565266
Alignment:
Q  80 tatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacatt 155  Q
    ||||||||||||||||||||| || ||||||| ||||| || ||||  || |||||||||||| |||||| ||||||    
T  18565190 tatttgaagtttgggggagtgtttgcatagggattgaagaattaggtttaatttcaaggaactattgtaaacacatt 18565266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 22362995 - 22362936
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    |||||||||  |||||||| | ||||||||||| ||||||||| ||||||||||| ||||    
T  22362995 agggttaatagtgctttaccccctgtaatataggtcattttcgattttccctgctataaa 22362936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 29239759 - 29239712
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggtttt 223  Q
    |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  29239759 agggttaatggtgctttacccactgtaatataggtcatttttggtttt 29239712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 23575812 - 23575750
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaa 117  Q
    |||||||||||| ||||||| ||||| |||| |||||||||||||  ||||||||| ||||||    
T  23575812 tcaagaagcaccaaattcaaggggtacttgatgtttgggggagtgttttacataggagttgaa 23575750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 24005609 - 24005515
Alignment:
Q  16 agcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagg 110  Q
    ||||| |||| |||||| ||||||||||||||| ||||| | ||||| |||| | ||||| ||||| |||||| || ||| | ||||| ||||||    
T  24005609 agcttcaaggattgcacaggtgattgaggattcaaagacttgaagaaacaccaatttcaaggggtacttgaagatttgggtaatggttgcatagg 24005515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 7054319 - 7054282
Alignment:
Q  198 ctgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  7054319 ctgtaatataggtcattttcggttttccctcctgtaaa 7054282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 15935385 - 15935481
Alignment:
Q  60 gaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggat-agtttcaaggaactcttgtaatcacatt 155  Q
    |||||||| ||||||| || || ||| |||||| ||||||| || |||| |||||||| || |||| | | |||||||||||||| |||| ||||||    
T  15935385 gaagcaccaaattcaagggttacttggagtttgcgggagtgtttgcataagggttgaagaattaggtttaatttcaaggaactctcgtaaacacatt 15935481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 2141 - 2025
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  2141 tcaaggagcactaaattcaaaggttatttgaagtttgggggagtgtttacataggggttcaagaactaggaatagtttcaaggaactcttgtaatcacat 2042  T
Q  155 ttgtaattcaacattgtt 172  Q
    |||| ||||||| |||||    
T  2041 ttgt-attcaactttgtt 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 17125470 - 17125309
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||||||||  | ||| |||||| |||| ||||| ||||||||||||||||||||| ||||||||||    
T  17125470 gaagagttcgaaggggtgcacgggtaatcaaggattcgaaga--ttaaggagcaccaaatttaaaggttatttgaagtttgggggagtgcttacataggg 17125373  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| ||||||||| |||  ||  ||||||||||||||||||||| |||||||| ||||||||    
T  17125372 gttgaagaactaggattgttcaaaaaaactcttgtaatcacatttgt-attcaacagtgttacta 17125309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 19303765 - 19303872
Alignment:
Q  69 aattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactag-gatagtttcaaggaactcttgtaatcacatttgtaattcaaca 167  Q
    |||||||||| ||||| ||||||||||||||| || ||||||||||||| || |||   || ||||||||||||||||||| ||||||||| ||||||||    
T  19303765 aattcaaaggttatttaaagtttgggggagtgtttgcataggggttgaagaattagttttaatttcaaggaactcttgtaaacacatttgt-attcaaca 19303863  T
Q  168 ttgttacta 176  Q
    |||||||||    
T  19303864 ttgttacta 19303872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 16647977 - 16647874
Alignment:
Q  52 gacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaatca 151  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||||||| || ||||||  ||||| |||| || ||||||||||||| | |||||||||    
T  16647977 gacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactgggctagtttcaaggaatttttgtaatca 16647878  T
Q  152 catt 155  Q
    ||||    
T  16647877 catt 16647874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 14992468 - 14992375
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaa 148  Q
    ||||| |||||| ||||||| || || ||| |||||||||||||| || ||||||||||||| || ||||  || |||||||||||||||||||    
T  14992468 tcaaggagcaccaaattcaagggttacttggagtttgggggagtgtttgcataggggttgaagaattaggtttaatttcaaggaactcttgtaa 14992375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 16598902 - 16598950
Alignment:
Q  127 tagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16598902 tagtttcaaggaactcttgtaatcacatttgt-atgcaacattgttacta 16598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 19236651 - 19236771
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactag-gatagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| |||||||||| ||||||| ||||||||||||  || ||||||||||||| || |||   || |||||| |||||  ||||| || ||    
T  19236651 tcaaggagcaccaaattcaaaggttatttgatgtttgggggagtttttgcataggggttgaagaattagttttaatttcaatgaactactgtaaacaaat 19236750  T
Q  155 ttgtaattcaacattgttacta 176  Q
    |||| |||||||||||||||||    
T  19236751 ttgt-attcaacattgttacta 19236771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 19309835 - 19309955
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactag-gatagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||| |||||||||| ||||||| ||||||||||||  || ||||||||||||| || |||   || |||||| |||||  ||||| || ||    
T  19309835 tcaaggagcaccaaattcaaaggttatttgatgtttgggggagtttttgcataggggttgaagaattagttttaatttcaatgaactactgtaaacaaat 19309934  T
Q  155 ttgtaattcaacattgttacta 176  Q
    |||| |||||||||||||||||    
T  19309935 ttgt-attcaacattgttacta 19309955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 22741574 - 22741657
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggg 95  Q
    |||| |||| |||| |||||  ||||||||| ||||||||||| | ||||| |||| | |||||||||||||||||| ||||||    
T  22741574 gaagggcttcaaggattgcataggtgattgaagattcgaagacttaaagaaacaccaatttcaaagggtatttgaagattgggg 22741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 18367026 - 18367084
Alignment:
Q  177 gggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| |||||||| | ||||||||||| |||||||||||||||||  |||||||    
T  18367026 gggttaatggtgctttaccccctgtaatataggtcattttcggttttcccccctgtaaa 18367084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 30222155 - 30222095
Alignment:
Q  166 cattgttactagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    |||| ||| ||||||||||  |||||||| | ||||||||||| |||||||||||||||||    
T  30222155 catttttagtagggttaatagtgctttaccccctgtaatataggtcattttcggttttccc 30222095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 9855985 - 9856044
Alignment:
Q  177 gggttaatgatgctttac-tcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| |||||||| || ||||||||||||||||||| |||||||||  |||||||    
T  9855985 gggttaatggtgctttacctccctgtaatatagatcatttttggttttcccccctgtaaa 9856044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 21692663 - 21692613
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    |||||||||| |||||||| | ||||||||||| ||||||| |||||||||    
T  21692663 agggttaatggtgctttaccccctgtaatataggtcatttttggttttccc 21692613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 24376016 - 24375970
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttt 222  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||||    
T  24376016 agggttaatattgctttactccctgtaatatagatcatttccggttt 24375970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 8367014 - 8366921
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaa 148  Q
    ||||| |||||| ||||||| ||||| |||||||||||||||||| || ||   |||||||| || ||||  || |||||||||| ||||||||    
T  8367014 tcaaggagcaccaaattcaaggggtacttgaagtttgggggagtgttttcaatagggttgaagaattaggtttaatttcaaggaaatcttgtaa 8366921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 27198165 - 27198202
Alignment:
Q  198 ctgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  27198165 ctgtaatataggtcattttcggttttccctcctgtaaa 27198202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 23389397 - 23389349
Alignment:
Q  176 agggttaatgatgctttactcactgtaatatagatcattttcggttttc 224  Q
    |||||||||  || ||||| ||||||||||||| |||||||||||||||    
T  23389397 agggttaatagtgttttacccactgtaatataggtcattttcggttttc 23389349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 6314 - 6457
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||| ||||| ||  |||||| |||| || ||||||     
T  6314 gaagaacttcaagggttgcacgggtgattgaagattcgaagacatcaagaaacaccaatttcaaaggttatttaaatattggggtagtgattgcatagga 6413  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     ||||| ||||||| ||||| ||||||| |||||||||||||||    
T  6414 attgaagaactagggtagttccaaggaattcttgtaatcacatt 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 26304 - 26161
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||| |||| |||||| || |||| |     
T  26304 gaagaacttcaagggttgaacgggtgattgaggattcaaagacatcaagaagcaccgatttcaaaggttatttgaagattggtggagtgattgcataaga 26205  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatt 155  Q
     | ||| ||||||| ||||||||||||  ||| |||||||||||    
T  26204 atggaagaactagggtagtttcaaggagttctagtaatcacatt 26161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 779 - 617
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    |||||| | |||||| ||||||||| ||  ||||||| ||||  ||||| |||||| |||||||||| |||||||| ||| |||||||| ||||||||||    
T  779 gaagagttcgaaggggtgcacgggtaatcaaggattcaaagat-tcaaggagcaccaaattcaaaggttatttgaatttttggggagtgtttacataggg 681  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    |||||| || | |  || ||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  680 gttgaagaaattgtttaattttaaggaactcttgtaaacacatttgt-attcaacattgttacta 617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 12994 - 12856
Alignment:
Q  28 tgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggat 127  Q
    ||||||||| ||  ||||||||||||  ||||| |||||| |||||||||| |||||||| ||||||||        ||||||||||||| ||||||  |    
T  12994 tgcacgggtaatcaaggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaattttggggg--------cataggggttgaagaactagttt 12904  T
Q  128 agtttcaaggaactcttgtaatcacatttgtaattcaacattgttacta 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12903 agtttcaaggaactcttgtaatcacatttgt-attcaacattgttacta 12856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 42375 - 42241
Alignment:
Q  21 gaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataa 120  Q
    |||||| |||||||||  |  ||||||||||||  ||||| |||||| |||||||||| ||||||||||||||||||||| ||  |||||||||||| ||    
T  42375 gaaggggtgcacgggtattcaaggattcgaagat-tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgaataggggttgaagaa 42277  T
Q  121 ctagg-atagtttcaaggaactcttgtaatcacatt 155  Q
     ||||  || ||||||||||||||||||| ||||||    
T  42276 ttaggtttaatttcaaggaactcttgtaaacacatt 42241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 558 - 697
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||||||||||| || ||||| |||||||||||||||||||||||  | |||||| ||  ||||||| || |||||||| || ||||||     
T  558 gaagaacttcaagggttgcacgagtaattgaagattcgaagacatcaagaagcacgaatttcaaaagg--tttgaagattcggggagtgattgcatagga 655  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaatcaca 153  Q
      |||| ||||| | ||||||||||||| |||||||||||||    
T  656 actgaagaactaaggtagtttcaaggaattcttgtaatcaca 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 63539 - 63639
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg-atagtttcaaggaactcttgtaatcacat 154  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||| || ||||||||||||| || ||||  || ||||||||||||||||||| |||||    
T  63539 tcaaggagcacaaaattcaaaggatatttgaagtttgggggagtgttttcataggggttgaagaattaggtttaatttcaaggaactcttgtaaacacat 63638  T
Q  155 t 155  Q
    |    
T  63639 t 63639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 39633 - 39502
Alignment:
Q  24 gggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataacta 123  Q
    |||||||||| || ||||| |||||||||||||||| ||| ||| | |||| ||| ||||||||| ||| ||||||| || ||||||  ||||| || ||    
T  39633 gggttgcacgagttattgaagattcgaagacatcaaaaagtaccaatttcagaggttatttgaagattgagggagtgattgcataggaattgaagaaata 39534  T
Q  124 ggatagtttcaaggaactcttgtaatcacatt 155  Q
    || | ||||||||||| | ||||| |||||||    
T  39533 gggttgtttcaaggaattattgtattcacatt 39502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 35293 - 35188
Alignment:
Q  49 gaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactaggatagtttcaaggaactcttgtaa 148  Q
    ||||||||||| ||||| | | |||||| ||| ||||||| ||||||||||| ||| |||||  ||||| ||||||| ||||||||||| | ||||||||    
T  35293 gaagacatcaaaaagcatcgatttcaaaaggt-tttgaagattgggggagtgattagataggaattgaagaactagggtagtttcaagggattcttgtaa 35195  T
Q  149 tcacatt 155  Q
    |||||||    
T  35194 tcacatt 35188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 70538 - 70673
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggg 111  Q
    ||||| ||| |||| |||||||||| | ||| |||||||||||||||||||||| | | || ||| ||| ||||||| ||||||||||| || ||||||     
T  70538 gaagaacttcaaggattgcacgggtaactgaagattcgaagacatcaagaagcatcaattttaaaaggt-tttgaagattgggggagtgattgcatagga 70636  T
Q  112 gttgaataactaggatagtttcaaggaactcttgtaa 148  Q
     ||||| ||| ||| ||||||||| ||| | ||||||    
T  70637 attgaagaaccagggtagtttcaaagaattgttgtaa 70673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 13707 - 13852
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggt-tacatagg 110  Q
    |||||| |||||||| |||||||||  |  ||||| ||||||  ||||| |||||| ||||||| ||||| ||||||||||||||| || | ||||||||    
T  13707 gaagagtttgaaggggtgcacgggtattcaaggatccgaagat-tcaaggagcaccaaattcaaggggtacttgaagtttgggggattgttctacatagg 13805  T
Q  111 ggttgaataactagg--atagtttcaaggaactcttgtaatcacatt 155  Q
     |||||| || ||||   || ||||||||||||||||||| ||||||    
T  13806 agttgaagaattaggttttaatttcaaggaactcttgtaaacacatt 13852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 6931 - 7024
Alignment:
Q  57 caagaagcacccaattcaaagggtatttgaagtttgggggagtggttacataggggttgaataactagg--atagtttcaaggaactcttgtaa 148  Q
    |||| |||||| |||||||||| ||||||||||||||||||||  || |||| |||||||| || ||||   || |||||||||||||||||||    
T  6931 caaggagcaccaaattcaaaggttatttgaagtttgggggagtctttgcataagggttgaagaattaggttttaatttcaaggaactcttgtaa 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 86763 - 86666
Alignment:
Q  12 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaagggtatttgaagtttgggggagtggttacatagg 110  Q
    |||||| |||||||| |||||||||  |  ||||||||||||  ||| | |||||| |||||| ||| ||||||||||||||||||||| || ||||||    
T  86763 gaagagtttgaaggggtgcacgggtattcaaggattcgaagat-tcatggagcaccaaattcagaggttatttgaagtttgggggagtgtttgcatagg 86666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1121 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 1427 - 1515
Alignment:
Q  69 aattcaaagggtatttgaagtttgggggagtggttacatagggg-ttgaataactaggat-agtttcaaggaactcttgtaatcacatt 155  Q
    |||||||||| ||||||||||||| ||||||| || |||||||| ||||| || || | | | ||||||||||||||||||| ||||||    
T  1427 aattcaaaggttatttgaagtttgtgggagtgtttgcatagggggttgaagaattaagtttaatttcaaggaactcttgtaaacacatt 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 12396 - 12447
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccc 226  Q
    |||||||||||||||||||| | ||||||||||| |||||||  ||||||||    
T  12396 tagggttaatgatgctttaccccctgtaatataggtcattttttgttttccc 12447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 3840 - 3882
Alignment:
Q  56 tcaagaagcacccaattcaaagggtatttgaagtttgggggag 98  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||    
T  3840 tcaagaagcaccaaattcaaggggtacttgaagtttgggggag 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 41732 - 41845
Alignment:
Q  57 caagaagcacccaattcaaagggtatttgaagtttgggggagtg-gttacataggggttgaataactagg--atagtttcaaggaactcttgtaatcaca 153  Q
    |||| |||||| |||| || ||| | ||||||||||||||||||  ||||||||| |||||| || ||||   || ||||||||||||||||||| |||     
T  41732 caaggagcaccaaattgaaggggcacttgaagtttgggggagtgttttacataggagttgaagaattaggttttaatttcaaggaactcttgtaaacac- 41830  T
Q  154 tttgtaattcaacatt 169  Q
    ||||| ||||||||||    
T  41831 tttgt-attcaacatt 41845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 53581 - 53521
Alignment:
Q  175 tagggttaatgatgctttactcactgtaatatagatcattttcggttttccctgctgtaaa 235  Q
    ||||||||| | |||||||| | ||||||||||| ||||||| |||||||||  |||||||    
T  53581 tagggttaacggtgctttaccccctgtaatataggtcatttttggttttcccccctgtaaa 53521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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