View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_27 (Length: 236)

Name: NF8324_1D_low_27
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_27
NF8324_1D_low_27
[»] chr7 (3 HSPs)
chr7 (36-220)||(8936279-8936463)
chr7 (36-169)||(8913776-8913909)
chr7 (36-118)||(8941923-8942005)
[»] chr4 (11 HSPs)
chr4 (36-157)||(7615061-7615182)
chr4 (36-220)||(7628436-7628620)
chr4 (36-169)||(7636863-7636996)
chr4 (36-112)||(39097544-39097620)
chr4 (33-100)||(39091270-39091337)
chr4 (36-134)||(7606070-7606168)
chr4 (35-88)||(39070833-39070886)
chr4 (36-100)||(39075095-39075159)
chr4 (39-100)||(39087879-39087940)
chr4 (76-116)||(7656364-7656404)
chr4 (32-100)||(39080297-39080365)
[»] chr3 (2 HSPs)
chr3 (36-100)||(8102323-8102387)
chr3 (36-120)||(40147552-40147636)
[»] chr8 (1 HSPs)
chr8 (36-98)||(34173991-34174053)
[»] chr6 (1 HSPs)
chr6 (40-132)||(6500335-6500427)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 8936279 - 8936463
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgca 135  Q
    |||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  8936279 gaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgca 8936378  T
Q  136 acatgatgtgtgtaaaatcaatttggtacaatatcgttgaaatgcttgaatttgttttttgtgtgacaacccatgaataattttt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8936379 acatgatgtgtgtaaaatcaatttggtacaatatcgttgaaatgcttgaatttgttttttgtgtgacaacccttgaataattttt 8936463  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 8913776 - 8913909
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgca 135  Q
    |||||||||| |||||| ||||||||||||||| | | |||||||||||||| |||||||||||||||  | |||||||||||||  |||||||||||||    
T  8913776 gaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgca 8913875  T
Q  136 acatgatgtgtgtaaaatcaatttggtacaatat 169  Q
     | ||| ||||||||||||||| || ||||||||    
T  8913876 gcgtgaggtgtgtaaaatcaatatgatacaatat 8913909  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 8941923 - 8942005
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgt 118  Q
    |||||||||||||| || |||||||| |||||| |  | ||| |||||||||||||||||| |||||| |  |||||||||||    
T  8941923 gaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgt 8942005  T

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Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 7615182 - 7615061
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgca 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  7615182 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgca 7615083  T
Q  136 acatgatgtgtgtaaaatcaat 157  Q
    ||||||||||||||||||||||    
T  7615082 acatgatgtgtgtaaaatcaat 7615061  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 7628620 - 7628436
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgca 135  Q
    |||||||||||||| || |||||| | |||||| |  | |||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||    
T  7628620 gaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca 7628521  T
Q  136 acatgatgtgtgtaaaatcaatttggtacaatatcgttgaaatgcttgaatttgttttttgtgtgacaacccatgaataattttt 220  Q
    || ||| |||||||||||||||||||| || ||| ||| | |||||| |||||| ||||||||||||||||||||||||||||||    
T  7628520 acgtgaggtgtgtaaaatcaatttggtgcagtattgttcagatgcttcaatttggtttttgtgtgacaacccatgaataattttt 7628436  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 7636996 - 7636863
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgca 135  Q
    ||||||||||||||||| ||||||||||||||| | | |||||||||||||| |||||||||||||||  | |||||||||||||  |||||||||||||    
T  7636996 gaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgca 7636897  T
Q  136 acatgatgtgtgtaaaatcaatttggtacaatat 169  Q
     | ||| ||||||||||||||| || ||||||||    
T  7636896 gcgtgaggtgtgtaaaatcaatatgatacaatat 7636863  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 39097620 - 39097544
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcat 112  Q
    |||||||||||||| ||| || ||||||| |||||  |||| ||||||||||| |||||||||||||||||||||||    
T  39097620 gaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccctcaattcat 39097544  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 39091337 - 39091270
Alignment:
Q  33 gttgaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 100  Q
    |||||||||||||| |||||| || |||||||||||||  ||||||||||||||||  ||||||||||    
T  39091337 gttgaagaaggtagcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatga 39091270  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 7606168 - 7606070
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaatgc 134  Q
    |||||||||||||| || |||||||| |||||| |  |  || |||||||||||||||||| |||||| || ||||||||||| |   |||||||||||    
T  7606168 gaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgc 7606070  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 39070886 - 39070833
Alignment:
Q  35 tgaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggc 88  Q
    ||||||||||||||||||| || || ||||||||||  ||||||||||||||||    
T  39070886 tgaagaaggtagtatagatgttgaaatttgtctttcttatgagattttggaggc 39070833  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 39075159 - 39075095
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 100  Q
    |||||||||||| | ||| |||||||||||||| |  |||| ||||||||||| |||||||||||    
T  39075159 gaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga 39075095  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39087940 - 39087879
Alignment:
Q  39 gaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 100  Q
    |||||||| || ||| || |||||||||||||  ||||||||||||||||  ||||||||||    
T  39087940 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 39087879  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 7656364 - 7656404
Alignment:
Q  76 agattttggaggcaatgggaaatgaccctcaattcatggat 116  Q
    ||||||||||||||||||||||||| ||| | |||||||||    
T  7656364 agattttggaggcaatgggaaatgatcctgagttcatggat 7656404  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 39080365 - 39080297
Alignment:
Q  32 cgttgaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 100  Q
    ||||||||||||||||||| || || |  ||||||||||  |||| |||||||||||  ||||||||||    
T  39080365 cgttgaagaaggtagtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatga 39080297  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 8102387 - 8102323
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 100  Q
    |||||||||||||| || |||||||| |||||| | ||  |||||||||||||||||||||||||    
T  8102387 gaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 40147552 - 40147636
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttg 120  Q
    ||||||||||| || ||  ||||||| |||||| | ||  ||||||||||||||||||||||||||| | | |||||||||||||    
T  40147552 gaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttg 40147636  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 34174053 - 34173991
Alignment:
Q  36 gaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaat 98  Q
    |||||||||||||| ||| |||||||||||||| |  |||| ||||||||||| || ||||||    
T  34174053 gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggaggctattggaaat 34173991  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 6500427 - 6500335
Alignment:
Q  40 aaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgattccaactaat 132  Q
    ||||||||||||| ||||||||||||||| |  |  ||| |||||| |||||| |  |||||||| | |||||||||| ||  ||||||||||    
T  6500427 aaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaactaat 6500335  T

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