View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_28 (Length: 236)
Name: NF8324_1D_low_28
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-131
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 53580157 - 53579922
Alignment:
| Q |
1 |
tttctacggtacaccctcttattgagaatgagttaaattcccagttcaaattgctactaaatgttggtccattcatcttgacaacaccgcaacgtatggt |
100 |
Q |
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| T |
53580157 |
tttctacggtacaccctcttattgagaatgagttaaattcccagttcaaattgctactaaatgttggtccattcatcttgacaacaccgcaacgtatggt |
53580058 |
T |
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| Q |
101 |
ttctgatgaacatggatgtttagcatggttgaaccaatgtgagaaattctcagttgtgtatattagcttcggaagtcggatagtaccaccacctcatgag |
200 |
Q |
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| T |
53580057 |
ttctgatgaacatggatgtttagcatggttgaaccaatgtgagaaattctcagttgtgtatattagcttcggaagtcggatagtaccaccacctcatgag |
53579958 |
T |
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| Q |
201 |
ctcaatgcattggctgagtgtttagaagaatgtgga |
236 |
Q |
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| T |
53579957 |
ctcaatgcattggctgagtgtttagaagaatgtgga |
53579922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 53565358 - 53565132
Alignment:
| Q |
10 |
tacaccctcttattgagaatgagttaaattcccagttcaaattgctactaaatgttggtccattcatcttgacaacaccgcaacgtatggtttctgatga |
109 |
Q |
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| T |
53565358 |
tacaccctcttattgagaatgagttaaattcaaagttcaaattgctactaaatgttggtccattcaacttgacaacaccacagcgtaaggtttccgatga |
53565259 |
T |
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| Q |
110 |
acatggatgtttagcatggttgaaccaatgtgagaaattctcagttgtgtatattagcttcggaagtcggatagtaccaccacctcatgagctcaatgca |
209 |
Q |
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| T |
53565258 |
acatggatgcttagaatggttggaccaacatgagaattcttcagtagtgtatataagctttggaagtgtggtaacacccccacctcatgagctcactgca |
53565159 |
T |
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| Q |
210 |
ttggctgagtgtttagaagaatgtgga |
236 |
Q |
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| T |
53565158 |
ttggcagagtccttagaggaatgtgga |
53565132 |
T |
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