View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_3 (Length: 428)
Name: NF8324_1D_low_3
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 35072149 - 35071743
Alignment:
| Q |
20 |
ggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataaca |
119 |
Q |
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| T |
35072149 |
ggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataaca |
35072050 |
T |
|
| Q |
120 |
ggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaact |
219 |
Q |
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| T |
35072049 |
ggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaact |
35071950 |
T |
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| Q |
220 |
gtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagag |
319 |
Q |
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| T |
35071949 |
gtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagag |
35071850 |
T |
|
| Q |
320 |
ttcacagtgagagtaattatgaaaag---------------ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgatt |
404 |
Q |
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| T |
35071849 |
ttcacagtgagagtaataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgatt |
35071750 |
T |
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| Q |
405 |
aggaaat |
411 |
Q |
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| T |
35071749 |
aggaaat |
35071743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 35072982 - 35072805
Alignment:
| Q |
27 |
ccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagaga |
126 |
Q |
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| T |
35072982 |
ccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgaga |
35072883 |
T |
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| Q |
127 |
ggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
204 |
Q |
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| T |
35072882 |
ggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 35106878 - 35107055
Alignment:
| Q |
27 |
ccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagaga |
126 |
Q |
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| T |
35106878 |
ccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgaga |
35106977 |
T |
|
| Q |
127 |
ggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
204 |
Q |
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| T |
35106978 |
ggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 24041038 - 24040861
Alignment:
| Q |
27 |
ccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagaga |
126 |
Q |
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| T |
24041038 |
ccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgaga |
24040939 |
T |
|
| Q |
127 |
ggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
204 |
Q |
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| T |
24040938 |
ggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
24040861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
221 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
286 |
Q |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 3123079 - 3123163
Alignment:
| Q |
15 |
tgaatggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
99 |
Q |
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|||| |||||||| |||||| ||||| |||||||||||| | |||||| |||| || || || ||||| ||||| ||||||||| |
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| T |
3123079 |
tgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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