View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_31 (Length: 232)

Name: NF8324_1D_low_31
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_31
NF8324_1D_low_31
[»] chr1 (4 HSPs)
chr1 (18-218)||(11780115-11780315)
chr1 (39-211)||(10424593-10424765)
chr1 (39-209)||(1624838-1625008)
chr1 (63-122)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (27-217)||(17158540-17158731)
[»] chr6 (4 HSPs)
chr6 (21-217)||(14977618-14977814)
chr6 (154-217)||(11776308-11776371)
chr6 (154-210)||(9352421-9352477)
chr6 (154-202)||(24353638-24353686)
[»] chr5 (4 HSPs)
chr5 (39-217)||(5781902-5782080)
chr5 (39-217)||(19069420-19069598)
chr5 (51-148)||(17763963-17764060)
chr5 (154-211)||(11724701-11724758)
[»] chr2 (2 HSPs)
chr2 (21-108)||(12101983-12102070)
chr2 (154-217)||(12101879-12101942)
[»] chr3 (6 HSPs)
chr3 (44-211)||(16311632-16311799)
chr3 (44-211)||(18488416-18488583)
chr3 (44-211)||(18492626-18492793)
chr3 (73-211)||(16314023-16314161)
chr3 (73-211)||(18495017-18495155)
chr3 (59-217)||(19829018-19829176)
[»] chr8 (1 HSPs)
chr8 (55-211)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 11780115 - 11780315
Alignment:
Q  18 acatcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacat 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11780115 acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat 11780214  T
Q  118 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11780215 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc 11780314  T
Q  218 a 218  Q
    |    
T  11780315 a 11780315  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
Q  39 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 138  Q
    ||||||||||||||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |    
T  10424593 gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga 10424692  T
Q  139 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    |||| || || ||  ||||||||||  |||||||||||||| ||||| | || ||||||||||||||||||||    
T  10424693 catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac 10424765  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 1624838 - 1625008
Alignment:
Q  39 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 138  Q
    ||||||||||||||| |||| |||| |||||| |||||||| ||||| ||| | |||| ||||  ||| ||||||||||||||  | |||||   ||| |    
T  1624838 gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatcataaagcgtaacagtga 1624937  T
Q  139 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgc 209  Q
    |||| || ||     ||||| ||||| |||||||||||||| ||||| |||| || ||||||||| |||||    
T  1624938 catcatccaccgtggggttccccaacacctcccgcgatgtcagatgcaactgttctactctctcaaaatgc 1625008  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
Q  63 gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc 122  Q
    |||||||| |||||||||||||| |||||||||| |  ||||| |||||||||| |||||    
T  30731537 gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc 30731478  T

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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 17158540 - 17158731
Alignment:
Q  27 tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga 126  Q
    |||| |||||||||||||||| |||||||||||||| | ||||| |||||||||||||  | ||  ||| ||||||||||||| ||||||||||||||||    
T  17158540 tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga 17158639  T
Q  127 gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgct-ccactctctcagaatgcacttcatc 217  Q
    | || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  17158640 gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatc 17158731  T

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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 14977814 - 14977618
Alignment:
Q  21 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat 120  Q
    ||||| |||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | |||  |||||||||||||||||||||||    
T  14977814 tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat 14977715  T
Q  121 ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
      || ||||| | |||||||||||||||     || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  14977714 aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatc 14977618  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 11776308 - 11776371
Alignment:
Q  154 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||    
T  11776308 ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatc 11776371  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
Q  154 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca 210  Q
    ||||||||||| |||| ||||||||| || || |||| |||||||||||||||||||    
T  9352421 ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca 9352477  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
Q  154 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc 202  Q
    |||||||||||||||||||||||||| ||||| |||||| | |||||||    
T  24353638 ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc 24353686  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 5781902 - 5782080
Alignment:
Q  39 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 138  Q
    |||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| | |||  ||||||||| |||||||||||||| || || ||   |||||    
T  5781902 gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa 5782001  T
Q  139 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    |||| || ||    |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  5782002 catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatc 5782080  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 19069420 - 19069598
Alignment:
Q  39 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 138  Q
    |||||||||| || | ||||||||  |||||| |||||||||||||| ||||| |||  ||||||||| |||||||||||||  || || ||   |||||    
T  19069420 gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa 19069519  T
Q  139 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    |||| || ||     |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| |||||    
T  19069520 catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatc 19069598  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
Q  51 acatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac 148  Q
    ||||||||||||| ||||||  ||||||||||||| ||| |   ||   |||||||||||||||||||||| || ||||| | ||||||||| |||||    
T  17764060 acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac 17763963  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
Q  154 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    ||||||||||| |||||||||||||| ||||| | |||||  |||||| |||||||||    
T  11724758 ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac 11724701  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 12102070 - 12101983
Alignment:
Q  21 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattat 108  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||    
T  12102070 tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattat 12101983  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 12101942 - 12101879
Alignment:
Q  154 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    ||||||||||||||||||||||||||| ||| |  |||||| ||||||||| |||||| |||||    
T  12101942 ggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcatc 12101879  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 16311799 - 16311632
Alignment:
Q  44 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 143  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  16311799 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 16311700  T
Q  144 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  16311699 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 16311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 18488583 - 18488416
Alignment:
Q  44 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 143  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18488583 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18488484  T
Q  144 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18488483 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18488416  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 18492793 - 18492626
Alignment:
Q  44 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 143  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18492793 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18492694  T
Q  144 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18492693 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18492626  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
Q  73 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 172  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  16314161 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 16314062  T
Q  173 cgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  16314061 tgatgtcagatgcaattgttccactttctcaaaatgcac 16314023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
Q  73 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 172  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  18495155 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 18495056  T
Q  173 cgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  18495055 tgatgtcagatgcaattgttccactttctcaaaatgcac 18495017  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 19829018 - 19829176
Alignment:
Q  59 atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc 158  Q
    ||||| |||||| |||||||||||||| ||| | |||  ||||||||| |||||||||||||| || || ||   |||||||||||  |||    |||||    
T  19829018 atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc 19829117  T
Q  159 tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 217  Q
    ||||||||| || | |||||| | ||| || ||||| |||||||||||||||| |||||    
T  19829118 tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatc 19829176  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 17459587 - 17459431
Alignment:
Q  55 gctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg 154  Q
    ||||||||| ||| ||  ||||||||||||  ||| | |||| ||||||||| |||||||||||||  || |||||   ||| |||||||| ||||   |    
T  17459587 gctcatggggaccgttgagactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggg 17459488  T
Q  155 gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 211  Q
    |||||||||||  |||||||||||||||||| | |||||  ||||||| ||||||||    
T  17459487 gttctccaacttttcccgcgatgtcggatgcaattgctctgctctctcggaatgcac 17459431  T

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