View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_32 (Length: 231)

Name: NF8324_1D_low_32
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_32
NF8324_1D_low_32
[»] chr4 (8 HSPs)
chr4 (113-210)||(18719926-18720023)
chr4 (113-210)||(18675396-18675500)
chr4 (126-210)||(18651286-18651370)
chr4 (126-206)||(18727342-18727422)
chr4 (11-77)||(18651528-18651594)
chr4 (31-82)||(18727569-18727620)
chr4 (35-89)||(18675612-18675666)
chr4 (35-94)||(18720138-18720197)
[»] chr6 (4 HSPs)
chr6 (16-82)||(26877614-26877679)
chr6 (32-82)||(27656683-27656733)
chr6 (143-180)||(26806684-26806721)
chr6 (140-208)||(26964429-26964496)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 18720023 - 18719926
Alignment:
Q  113 attatgattcagattggaattgtttaatcacttttcacaggggtttctgctaggaaatgacatctattatatcttaatgcacttaatcatgtatctat 210  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  18720023 attatgattcagattggaattgttgaattacttttcacaggggtttctgctaggaagtgacatgtattatatcttaatgcacttaatcatgtatctat 18719926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 18675500 - 18675396
Alignment:
Q  113 attatgattcagattggaattgtttaatcacttttcacaggggtttctgctaggaaatgac-------atctattatatcttaatgcacttaatcatgta 205  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||    
T  18675500 attatgattcagattggaattgttgaattacttttcacaggggtttctgctaggaagtgacatctataatctattatatcttaatgcacttaatcatgta 18675401  T
Q  206 tctat 210  Q
    |||||    
T  18675400 tctat 18675396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 18651370 - 18651286
Alignment:
Q  126 ttggaattgtttaatcacttttcacaggggtttctgctaggaaatgacatctattatatcttaatgcacttaatcatgtatctat 210  Q
    ||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18651370 ttggaatagtttaatcacttttcacgggggtttctgataggaagtgacatctattatatcttaatgcatttaatcatgtatctat 18651286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 18727422 - 18727342
Alignment:
Q  126 ttggaattgtttaatcacttttcacaggggtttctgctaggaaatgacatctattatatcttaatgcacttaatcatgtat 206  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18727422 ttggaatagtttaatcacttttcacgggggtttctgctaggaagtgacatatattatatcttaatgcacttaatcatgtat 18727342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 18651594 - 18651528
Alignment:
Q  11 gttgaaagtcttcatgagttattgtaaagattaagaaaatctagggttgttctccccttctatttat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18651594 gttgaaagtcttcatgagttattgtaaagattaagaaaatctaggcttgttctccccttctatttat 18651528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 18727620 - 18727569
Alignment:
Q  31 attgtaaagattaagaaaatctagggttgttctccccttctatttatttatt 82  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18727620 attgtaaagattaagaaaatctaggcttgttctccccttctatttacttatt 18727569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 18675666 - 18675612
Alignment:
Q  35 taaagattaagaaaatctagggttgttctccccttctatttatttattaattgtg 89  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  18675666 taaagattaagaaaatctaggcgtgttctccccttctatttatttacttattgtg 18675612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 18720197 - 18720138
Alignment:
Q  35 taaagattaagaaaatctagggttgttctccccttctatttatttattaattgtgctatg 94  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||   |||||||||||    
T  18720197 taaagattaagagaatctaggcatgttctccccttctatttatttacctattgtgctatg 18720138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 26877614 - 26877679
Alignment:
Q  16 aagtcttcatgagttattgtaaagattaagaaaatctagggttgttctccccttctatttatttatt 82  Q
    |||||||| |||||| ||||| || |||||||||| |||| ||||| |||| |||||||||||||||    
T  26877614 aagtcttcgtgagttcttgtacaggttaagaaaatttaggcttgttttccc-ttctatttatttatt 26877679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 27656733 - 27656683
Alignment:
Q  32 ttgtaaagattaagaaaatctagggttgttctccccttctatttatttatt 82  Q
    ||||||| ||||||||||  || | ||||||||||||||||||||||||||    
T  27656733 ttgtaaatattaagaaaacttaagcttgttctccccttctatttatttatt 27656683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 26806684 - 26806721
Alignment:
Q  143 cttttcacaggggtttctgctaggaaatgacatctatt 180  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  26806684 cttttcacaggggtttctgctaggaagggacatctatt 26806721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 26964429 - 26964496
Alignment:
Q  140 tcacttttcacaggggtttctgctaggaaatgacatctattatatcttaatgcacttaatcatgtatct 208  Q
    |||||||||  | |||||||||||||||| ||||||  |||||||  ||||||||||||||||| ||||    
T  26964429 tcacttttcctaagggtttctgctaggaagtgacat-aattatatgctaatgcacttaatcatgaatct 26964496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University