View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_33 (Length: 229)

Name: NF8324_1D_low_33
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_33
NF8324_1D_low_33
[»] chr6 (5 HSPs)
chr6 (1-213)||(3047909-3048121)
chr6 (28-161)||(33466084-33466217)
chr6 (1-161)||(34605515-34605675)
chr6 (1-161)||(34726792-34726952)
chr6 (1-145)||(34729165-34729309)
[»] chr3 (9 HSPs)
chr3 (1-161)||(39193464-39193624)
chr3 (1-161)||(30858995-30859155)
chr3 (1-161)||(38866837-38866997)
chr3 (45-156)||(530087-530198)
chr3 (45-156)||(486031-486142)
chr3 (45-156)||(553050-553161)
chr3 (45-156)||(540854-540965)
chr3 (45-156)||(572882-572993)
chr3 (45-149)||(563160-563264)
[»] chr4 (2 HSPs)
chr4 (49-156)||(55837840-55837947)
chr4 (49-155)||(55773629-55773735)
[»] chr5 (2 HSPs)
chr5 (4-153)||(1204694-1204841)
chr5 (47-161)||(43156610-43156724)
[»] chr1 (1 HSPs)
chr1 (47-110)||(48179013-48179076)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3047909 - 3048121
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3047909 atcaatctcgaagttttagttgggttacttatttgacaccgcaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 3048008  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactactattcaagtacattttgtttcttacgcacacgtcgggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048009 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactactattcaagtacattttgtttcttacgcacacgtcgggttg 3048108  T
Q  201 gttagttgtgatg 213  Q
    |||||||||||||    
T  3048109 gttagttgtgatg 3048121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 33466217 - 33466084
Alignment:
Q  28 cttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactc 127  Q
    |||||| ||||||||| |||||||||||||||||||| ||  | | || |||||||||||||||  |||| ||||||||||||||  ||| |||||| |     
T  33466217 cttattcgacaccacacaaggttgttgactttgttgttttaaataatatcatatatgttgtcactgacaaggccaacatagggatgctcagcttgaaata 33466118  T
Q  128 tacaaatataaattttttagaattgaagactact 161  Q
    | |||||||||||||||||||| |||||| ||||    
T  33466117 tgcaaatataaattttttagaactgaagaatact 33466084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 34605515 - 34605675
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | || |||||  | |||||| ||||||||| |||||||||||||||| ||| ||  |   || |||||||||||||||  |||| ||    
T  34605515 atcaatctcgaaatctttgttggactgcttattcgacaccacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggc 34605614  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactact 161  Q
    || |||||||||| ||| |||||| | | |||||||||||||||||||| |||||| ||||    
T  34605615 cagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtact 34605675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 34726792 - 34726952
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | || |||||  | |||||| ||||||||| |||||||||||||||| ||| ||  |   || |||||||||||||||  |||| ||    
T  34726792 atcaatctcgaaatctttgttggactgcttattcgacaccacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggc 34726891  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactact 161  Q
    || |||||||||| ||| |||||| | | |||||||||||||||||||| |||||| ||||    
T  34726892 cagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtact 34726952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34729165 - 34729309
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | || |||||  | |||||| ||||||||| |||||||||||||||| ||| ||  |   || |||||||||||||||  |||| ||    
T  34729165 atcaatctcgaaatctttgttggactgcttattcgacaccacataaggttgttgactttgatgttttaaattatatcatatatgttgtcactgacaaggc 34729264  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaatttttt 145  Q
    ||||||| ||||| |||| ||||| | | ||||||||||||||||    
T  34729265 caacataaggatactcaatttgaaatatgcaaatataaatttttt 34729309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 39193624 - 39193464
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | ||  ||||||||||||||||||| |||| |||||||||||||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  39193624 atcaatctcgaaatcttgattgggttacttatttgacatcacataaggttgttgactttgttgttttgcacaataccatatacgttgtcactaacaaagc 39193525  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactact 161  Q
    ||||||||||||| |||||||||| ||| | ||||||| |||||||||||| |||| ||||    
T  39193524 caacatagggatactcaacttgaattctgcgaatataatttttttagaattcaagagtact 39193464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 30859155 - 30858995
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | || ||||||||||||||| ||||||| | |||||| ||||||||||||| ||||| | ||||||||||||||||||  |||| ||    
T  30859155 atcaatctcgaaatcttggttgggttacttattcgacaccagagaaggttattgactttgttgttttgcacaataccatatatgttgtcactgacaaggc 30859056  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactact 161  Q
     |||||||||||| | | |||||||||| ||||||||||| ||||| || |||||| ||||    
T  30859055 taacatagggatacttagcttgaactctgcaaatataaatgttttacaactgaagagtact 30858995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 38866997 - 38866837
Alignment:
Q  1 atcaatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagc 100  Q
    |||||||||||| | || |||||||||||||||  |||||||| | ||||||||| |||||||| ||||| | ||||||||||||| ||||  |||| ||    
T  38866997 atcaatctcgaaatcttggttgggttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggc 38866898  T
Q  101 caacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactact 161  Q
    |||||| |||||| |||  ||||| ||| |||||||||| ||||||||  |||||| ||||    
T  38866897 caacattgggatactcagtttgaattctgcaaatataaactttttagatctgaagagtact 38866837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 530198 - 530087
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||  |||| |||||||||||  || || ||||||| || ||||||||||| ||||    
T  530198 aaggttgttgactttgttgttttgcagaatactatatatgttgtcactgacaaggccaacataggtgtactcgacttgaattccacaaatataaaatttt 530099  T
Q  145 tagaattgaaga 156  Q
    ||||| ||||||    
T  530098 tagaactgaaga 530087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 486142 - 486031
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| || || | ||| |||||||||||||||||| | |||| ||||||  || || ||||||| ||  |||||||||| ||||    
T  486142 aaggttgttgactttgttgtgtttcataatactatatatgttgtcaccaacgaggccatcataggtgtactcgacttgaattcctcaaatataaaatttt 486043  T
Q  145 tagaattgaaga 156  Q
    ||||| ||||||    
T  486042 tagaaatgaaga 486031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 553161 - 553050
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| |||||   ||| ||||| ||||||||  |||| |||||||||||  || |  ||||||| || ||||||||||| ||||    
T  553161 aaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaatataaaatttt 553062  T
Q  145 tagaattgaaga 156  Q
    ||||| ||||||    
T  553061 tagaactgaaga 553050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 540965 - 540854
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| |||||   ||| ||||| ||||||||  |||| |||||||||||  || |  ||||||| || ||||||||||| | ||    
T  540965 aaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaatataaaatatt 540866  T
Q  145 tagaattgaaga 156  Q
    ||||| ||||||    
T  540865 tagaactgaaga 540854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 572993 - 572882
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| |||||   ||| ||||| ||||||||  |||| |||||||||||  || |  ||||||| || ||||||| |  |||||    
T  572993 aaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaataaattttttt 572894  T
Q  145 tagaattgaaga 156  Q
    ||||| ||||||    
T  572893 tagaactgaaga 572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 563264 - 563160
Alignment:
Q  45 aaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttt 144  Q
    |||||||||||||||||||| || || | ||| || || || |||||| ||||   |||||||||  || || ||||||| | | |||||||||||||||    
T  563264 aaggttgttgactttgttgtttttcataatactatttacgtcgtcaccgacaagatcaacataggtgtactcgacttgaattatgcaaatataaattttt 563165  T
Q  145 tagaa 149  Q
    |||||    
T  563164 tagaa 563160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 55837840 - 55837947
Alignment:
Q  49 ttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttttaga 148  Q
    |||||||||||||||| ||||| |  || ||||||||||||| | |||| ||||||||||||||| ||||||| || ||| |||||||||| ||||||||    
T  55837840 ttgttgactttgttgttttgcacaacactatatatgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatataaagtttttaga 55837939  T
Q  149 attgaaga 156  Q
    | ||||||    
T  55837940 aatgaaga 55837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 55773629 - 55773735
Alignment:
Q  49 ttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttttaga 148  Q
    |||||||||||||||| ||||| |  || ||||||||||||| | |||| ||||||||||||||| ||||||| || ||| ||||||| || ||||||||    
T  55773629 ttgttgactttgttgttttgcacaacactatatatgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatattaagtttttaga 55773728  T
Q  149 attgaag 155  Q
    | |||||    
T  55773729 aatgaag 55773735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 1204841 - 1204694
Alignment:
Q  4 aatctcgaagttttagttgggttacttatttgacaccacaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaa 103  Q
    |||| |||| |||| |||||||||||||||  ||| ||||||||||||||||||||||||| ||||| | |||   |||||||||||   || | |||||    
T  1204841 aatcccgaaattttggttgggttacttattcaacatcacaaaaggttgttgactttgttgttttgcacaatac--aatatgttgtcattgacgaggccaa 1204744  T
Q  104 catagggatagtcaacttgaactctacaaatataaattttttagaattga 153  Q
    ||||||||| |||| |||||  ||| ||||||||| |||||| |||||||    
T  1204743 catagggattgtcagcttgagttctgcaaatataagttttttggaattga 1204694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 43156724 - 43156610
Alignment:
Q  47 ggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaatttttta 146  Q
    |||||||||||||||  | ||||| ||||  ||||||||  |||| || || |||||||||||| || | | |||||||||| |||||||||  ||| ||    
T  43156724 ggttgttgactttgtgcttttgcatagtataatatatgtcatcactaataaggccaacataggggtatttagcttgaactctgcaaatataagatttcta 43156625  T
Q  147 gaattgaagactact 161  Q
     ||||||||| ||||    
T  43156624 aaattgaagagtact 43156610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 48179013 - 48179076
Alignment:
Q  47 ggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacataggg 110  Q
    ||||||||||||||| || ||||| | ||  |||||||||||||| ||||| ||||||||||||    
T  48179013 ggttgttgactttgtagttttgcataatataatatatgttgtcactaacaatgccaacataggg 48179076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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