View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_34 (Length: 225)
Name: NF8324_1D_low_34
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 52204357 - 52204157
Alignment:
| Q |
19 |
agtttaaacctacaatgcaatttcaaatatcagnnnnnnnncttcataagactactgtcaaacatttattaaaatagtattgttaattatcttagcacga |
118 |
Q |
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| T |
52204357 |
agtttaaacctacaatgcaatttcaaatatcagttttttttcttcataagactactgtcaaacatttattaaaatagtattgttaattatcttagcacga |
52204258 |
T |
|
| Q |
119 |
tactcttgcattgggtgcaatttttgcaacaaagcttttcataaaccacagtcactaatgacgtgcattgtgtgcatgacctgaaaaaccattcaacacc |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
52204257 |
tactcttgcattgggtgcattttttgcaacaaagctttccataaaccacagtcactaatgacgcgcattgtgtgcatgacctgaaaaaccattccacacc |
52204158 |
T |
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| Q |
219 |
a |
219 |
Q |
| |
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| |
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| T |
52204157 |
a |
52204157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 34308317 - 34308117
Alignment:
| Q |
19 |
agtttaaacctacaatgcaatttcaaatatcagnnnnnnnncttcataagactactgtcaaacatttattaaaatagtattgttaattatcttagcacga |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
34308317 |
agtttaaacctacaatgcagtttcaaatatcagttttttttcttcataagactactgtcaaacatttattaaaatagcattgttaattaccttagcacga |
34308218 |
T |
|
| Q |
119 |
tactcttgcattgggtgcaatttttgcaacaaagcttttcataaaccacagtcactaatgacgtgcattgtgtgcatgacctgaaaaaccattcaacacc |
218 |
Q |
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||||||||||||||| || ||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
34308217 |
cactcttgcattgggtacatttttttcaacaaagttttccataaaccacagtcactaatgacgcgcattgtgtgcatgacctgaaataccattccacacc |
34308118 |
T |
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| Q |
219 |
a |
219 |
Q |
| |
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| |
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| T |
34308117 |
a |
34308117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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