View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_35 (Length: 222)
Name: NF8324_1D_low_35
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 7134804 - 7134887
Alignment:
| Q |
8 |
gagatgaatgtcgagggagattacctctagatttataatcatgttacgtttgcgtccaattccatgagttttttcaccttgtat |
91 |
Q |
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| T |
7134804 |
gagatgtatgtcgagggagattacctctagatttataatcatgttacgtttgcgtccaattccatgagttttttcaccttgtat |
7134887 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 7134881 - 7134969
Alignment:
| Q |
127 |
cttgtatacgatccataataaaccaccttcgtttctcaccttatccgtgtcgtgaatcgtaagcgccacgtgcattaaaggatatatac |
215 |
Q |
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| T |
7134881 |
cttgtatacgatccataataaaccttcttcgtttctcaccttatccgtgtcgtgaatcctaagcgccacgtgcattaaaggatatatac |
7134969 |
T |
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