View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_38 (Length: 220)
Name: NF8324_1D_low_38
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36232073 - 36232260
Alignment:
| Q |
10 |
aatagcttattaaaaacatacaaattacaatgacttaattaaaaaacttttaacgaaggtagagttacttgaaatttaaaatattgtcagagtcaggact |
109 |
Q |
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| T |
36232073 |
aatagcttattaaaaacatacaaattacaatgatctaattgaaaaacttttaataaagatagagttatttgaaatttaaaatattatcagaatcatgact |
36232172 |
T |
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| Q |
110 |
aatttgaaagtggttaaagagaccaagatcaatttaacagtttactcatctttctcgatgcaataaagtaacaaagctgtttgatgag |
197 |
Q |
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| T |
36232173 |
aatttaaaagtggttacaaagaccaagatcaatttagcagtttactcatctttctcgatgaaataaagtaacaaagctgtttgatgag |
36232260 |
T |
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